Wall clock time and date at job start Sun Mar 29 2020 22:01:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36769 * 119.99780 * 2 1
4 4 H 1.07999 * 119.99905 * 209.67869 * 3 2 1
5 5 C 1.38958 * 120.00143 * 29.68014 * 3 2 1
6 6 N 1.31447 * 120.00155 * 16.34962 * 5 3 2
7 7 Si 1.86808 * 119.99721 * 196.34585 * 5 3 2
8 8 H 1.48502 * 109.46929 * 90.00402 * 7 5 3
9 9 H 1.48497 * 109.46880 * 209.99660 * 7 5 3
10 10 H 1.48498 * 109.47193 * 330.00200 * 7 5 3
11 11 C 1.37830 * 119.99829 * 179.97438 * 2 1 3
12 12 N 1.32642 * 120.87557 * 174.48167 * 11 2 1
13 13 C 1.32259 * 121.56607 * 180.02562 * 12 11 2
14 14 N 1.31283 * 122.85504 * 0.02562 * 13 12 11
15 15 C 1.33919 * 120.46331 * 359.97438 * 14 13 12
16 16 C 1.40556 * 122.07536 * 179.97438 * 15 14 13
17 17 C 1.36704 * 118.06318 * 180.02562 * 16 15 14
18 18 C 1.39316 * 119.95679 * 0.27493 * 17 16 15
19 19 N 1.31254 * 121.66712 * 359.44271 * 18 17 16
20 20 C 1.33056 * 121.18365 * 0.53644 * 19 18 17
21 21 H 1.08998 * 109.47693 * 245.27870 * 1 2 3
22 22 H 1.09004 * 109.47051 * 5.28735 * 1 2 3
23 23 H 1.09006 * 109.46708 * 125.27919 * 1 2 3
24 24 H 0.96996 * 119.99995 * 180.02562 * 6 5 3
25 25 H 1.08004 * 118.57261 * 180.02562 * 13 12 11
26 26 H 1.08009 * 120.97084 * 0.05209 * 16 15 14
27 27 H 1.07996 * 120.02060 * 180.02562 * 17 16 15
28 28 H 1.08006 * 119.16360 * 179.72124 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1488 1.1845 0.0000
4 1 3.1225 1.2458 -0.4631
5 6 1.5907 2.3089 0.5959
6 7 0.5803 2.1795 1.4266
7 14 2.2766 4.0046 0.2164
8 1 1.5633 4.5766 -0.9538
9 1 2.0865 4.8901 1.3932
10 1 3.7251 3.8950 -0.0919
11 6 2.1541 -1.1937 0.0005
12 7 3.4758 -1.2167 -0.1089
13 6 4.1507 -2.3541 -0.1105
14 7 3.5701 -3.5269 -0.0057
15 6 2.2391 -3.6176 0.1100
16 6 1.5824 -4.8551 0.2237
17 6 0.2200 -4.8523 0.3370
18 6 -0.4759 -3.6454 0.3317
19 7 0.1440 -2.4929 0.2305
20 6 1.4683 -2.4305 0.1177
21 1 -0.3634 -0.4297 0.9334
22 1 -0.3633 1.0233 -0.0947
23 1 -0.3633 -0.5936 -0.8390
24 1 0.1905 2.9644 1.8422
25 1 5.2262 -2.3164 -0.2018
26 1 2.1379 -5.7814 0.2219
27 1 -0.3167 -5.7851 0.4266
28 1 -1.5525 -3.6583 0.4175
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166798981.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:01:01
Heat of formation + Delta-G solvation = 79.013973 kcal
Electronic energy + Delta-G solvation = -15513.290932 eV
Core-core repulsion = 12950.346121 eV
Total energy + Delta-G solvation = -2562.944811 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.06968 -39.11957 -38.38661 -34.94336 -33.39247 -32.61879 -31.12564 -28.58545
-26.96747 -25.08072 -24.81409 -22.66870 -20.42001 -19.29402 -18.31160 -18.26159
-17.06299 -16.41088 -16.14804 -15.84078 -15.09029 -14.96190 -14.73280 -14.06111
-13.74659 -13.57009 -13.47926 -13.24342 -12.72657 -12.60655 -12.18395 -12.12509
-11.80663 -11.16480 -10.57773 -10.38860 -10.21482 -9.44003 -8.88664 -8.54849
-6.07388 -0.28500 0.00854 1.13993 1.39975 1.48126 1.54278 2.11323
2.34751 2.60878 2.78972 3.42140 3.50276 3.58532 3.72818 4.09352
4.22554 4.24034 4.62677 4.68988 4.81131 4.84719 5.09675 5.19401
5.23705 5.25916 5.56186 5.65544 6.04411 6.23831 6.57547 6.96859
7.07593 7.26352 7.83609 8.37030
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.038939 B = 0.008665 C = 0.007249
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 718.899216 B = 3230.445922 C = 3861.935267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.137 3.863
2 N -0.363 5.363
3 C -0.327 4.327
4 H 0.102 0.898
5 C 0.002 3.998
6 N -0.869 5.869
7 Si 1.007 2.993
8 H -0.261 1.261
9 H -0.272 1.272
10 H -0.263 1.263
11 C 0.351 3.649
12 N -0.634 5.634
13 C 0.342 3.658
14 N -0.625 5.625
15 C 0.133 3.867
16 C -0.109 4.109
17 C -0.111 4.111
18 C 0.050 3.950
19 N -0.461 5.461
20 C -0.038 4.038
21 H 0.054 0.946
22 H 0.075 0.925
23 H 0.054 0.946
24 H 0.286 0.714
25 H 0.209 0.791
26 H 0.159 0.841
27 H 0.184 0.816
28 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.999 -6.640 -1.868 7.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.006 4.006
2 N -0.046 5.046
3 C -0.457 4.457
4 H 0.120 0.880
5 C -0.205 4.205
6 N -0.502 5.502
7 Si 0.828 3.172
8 H -0.185 1.185
9 H -0.197 1.197
10 H -0.187 1.187
11 C 0.097 3.903
12 N -0.368 5.368
13 C 0.050 3.950
14 N -0.355 5.355
15 C 0.005 3.995
16 C -0.137 4.137
17 C -0.132 4.132
18 C -0.121 4.121
19 N -0.171 5.171
20 C -0.173 4.173
21 H 0.073 0.927
22 H 0.093 0.907
23 H 0.072 0.928
24 H 0.096 0.904
25 H 0.225 0.775
26 H 0.177 0.823
27 H 0.201 0.799
28 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -2.851 -5.388 -1.807 6.358
hybrid contribution -0.018 0.072 0.138 0.156
sum -2.869 -5.316 -1.669 6.267
Atomic orbital electron populations
1.21702 0.77010 1.01398 1.00460 1.42995 1.06544 1.02439 1.52575
1.20228 1.04621 0.85379 1.35492 0.88019 1.26556 0.96515 1.04433
0.93007 1.70087 1.23535 1.33347 1.23222 0.84719 0.79161 0.74804
0.78491 1.18521 1.19661 1.18732 1.18986 0.88901 0.85659 0.96720
1.67821 1.06291 1.32039 1.30654 1.24862 1.01011 0.82129 0.87017
1.68685 1.08815 1.28065 1.29903 1.19924 0.91188 0.94051 0.94325
1.21281 0.95191 0.95799 1.01464 1.22297 0.93796 1.00931 0.96197
1.23442 1.01842 0.87262 0.99540 1.67919 1.08104 1.30804 1.10322
1.19814 0.92082 0.94340 1.11071 0.92712 0.90692 0.92796 0.90375
0.77475 0.82342 0.79893 0.79518
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.14 6.57 7.80 127.77 1.00 7.57 15
2 N -0.36 -19.32 3.05 -539.40 -1.65 -20.97 15
3 C -0.33 -17.51 9.18 84.10 0.77 -16.74 15
4 H 0.10 5.58 7.51 -2.91 -0.02 5.56 15
5 C 0.00 0.09 4.89 84.92 0.42 0.50 15
6 N -0.87 -44.27 11.20 21.67 0.24 -44.03 15
7 Si 1.01 38.75 29.58 68.60 2.03 40.78 15
8 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15
9 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15
10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15
11 C 0.35 18.45 7.39 134.08 0.99 19.44 15
12 N -0.63 -32.20 9.40 -196.52 -1.85 -34.04 15
13 C 0.34 14.92 12.23 180.90 2.21 17.13 15
14 N -0.63 -27.24 10.45 -193.82 -2.02 -29.27 15
15 C 0.13 5.71 6.62 40.20 0.27 5.98 15
16 C -0.11 -3.53 10.14 22.48 0.23 -3.30 15
17 C -0.11 -2.87 10.03 22.17 0.22 -2.65 15
18 C 0.05 1.53 11.15 85.04 0.95 2.47 15
19 N -0.46 -19.22 6.41 -187.99 -1.20 -20.43 15
20 C -0.04 -1.80 6.56 40.68 0.27 -1.54 15
21 H 0.05 2.69 7.20 -2.39 -0.02 2.68 15
22 H 0.07 3.65 6.00 -2.38 -0.01 3.64 15
23 H 0.05 2.42 7.20 -2.38 -0.02 2.40 15
24 H 0.29 13.36 8.31 -92.71 -0.77 12.59 15
25 H 0.21 7.16 8.06 -2.91 -0.02 7.14 15
26 H 0.16 4.25 8.06 -2.91 -0.02 4.22 15
27 H 0.18 2.75 8.06 -2.91 -0.02 2.73 15
28 H 0.19 4.11 8.06 -2.91 -0.02 4.09 15
Total: -1.00 -65.65 245.84 4.05 -61.60
By element:
Atomic # 1 Polarization: 16.30 SS G_CDS: 1.19 Total: 17.49 kcal
Atomic # 6 Polarization: 21.54 SS G_CDS: 7.32 Total: 28.86 kcal
Atomic # 7 Polarization: -142.25 SS G_CDS: -6.48 Total: -148.73 kcal
Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal
Total: -65.65 4.05 -61.60 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166798981.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.616 kcal
(2) G-P(sol) polarization free energy of solvation -65.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds