Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36769 * 119.99780 * 2 1 4 4 H 1.07999 * 119.99905 * 209.67869 * 3 2 1 5 5 C 1.38958 * 120.00143 * 29.68014 * 3 2 1 6 6 N 1.31447 * 120.00155 * 16.34962 * 5 3 2 7 7 Si 1.86808 * 119.99721 * 196.34585 * 5 3 2 8 8 H 1.48502 * 109.46929 * 90.00402 * 7 5 3 9 9 H 1.48497 * 109.46880 * 209.99660 * 7 5 3 10 10 H 1.48498 * 109.47193 * 330.00200 * 7 5 3 11 11 C 1.37830 * 119.99829 * 179.97438 * 2 1 3 12 12 N 1.32642 * 120.87557 * 174.48167 * 11 2 1 13 13 C 1.32259 * 121.56607 * 180.02562 * 12 11 2 14 14 N 1.31283 * 122.85504 * 0.02562 * 13 12 11 15 15 C 1.33919 * 120.46331 * 359.97438 * 14 13 12 16 16 C 1.40556 * 122.07536 * 179.97438 * 15 14 13 17 17 C 1.36704 * 118.06318 * 180.02562 * 16 15 14 18 18 C 1.39316 * 119.95679 * 0.27493 * 17 16 15 19 19 N 1.31254 * 121.66712 * 359.44271 * 18 17 16 20 20 C 1.33056 * 121.18365 * 0.53644 * 19 18 17 21 21 H 1.08998 * 109.47693 * 245.27870 * 1 2 3 22 22 H 1.09004 * 109.47051 * 5.28735 * 1 2 3 23 23 H 1.09006 * 109.46708 * 125.27919 * 1 2 3 24 24 H 0.96996 * 119.99995 * 180.02562 * 6 5 3 25 25 H 1.08004 * 118.57261 * 180.02562 * 13 12 11 26 26 H 1.08009 * 120.97084 * 0.05209 * 16 15 14 27 27 H 1.07996 * 120.02060 * 180.02562 * 17 16 15 28 28 H 1.08006 * 119.16360 * 179.72124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1845 0.0000 4 1 3.1225 1.2458 -0.4631 5 6 1.5907 2.3089 0.5959 6 7 0.5803 2.1795 1.4266 7 14 2.2766 4.0046 0.2164 8 1 1.5633 4.5766 -0.9538 9 1 2.0865 4.8901 1.3932 10 1 3.7251 3.8950 -0.0919 11 6 2.1541 -1.1937 0.0005 12 7 3.4758 -1.2167 -0.1089 13 6 4.1507 -2.3541 -0.1105 14 7 3.5701 -3.5269 -0.0057 15 6 2.2391 -3.6176 0.1100 16 6 1.5824 -4.8551 0.2237 17 6 0.2200 -4.8523 0.3370 18 6 -0.4759 -3.6454 0.3317 19 7 0.1440 -2.4929 0.2305 20 6 1.4683 -2.4305 0.1177 21 1 -0.3634 -0.4297 0.9334 22 1 -0.3633 1.0233 -0.0947 23 1 -0.3633 -0.5936 -0.8390 24 1 0.1905 2.9644 1.8422 25 1 5.2262 -2.3164 -0.2018 26 1 2.1379 -5.7814 0.2219 27 1 -0.3167 -5.7851 0.4266 28 1 -1.5525 -3.6583 0.4175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798981.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = 79.013973 kcal Electronic energy + Delta-G solvation = -15513.290932 eV Core-core repulsion = 12950.346121 eV Total energy + Delta-G solvation = -2562.944811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06968 -39.11957 -38.38661 -34.94336 -33.39247 -32.61879 -31.12564 -28.58545 -26.96747 -25.08072 -24.81409 -22.66870 -20.42001 -19.29402 -18.31160 -18.26159 -17.06299 -16.41088 -16.14804 -15.84078 -15.09029 -14.96190 -14.73280 -14.06111 -13.74659 -13.57009 -13.47926 -13.24342 -12.72657 -12.60655 -12.18395 -12.12509 -11.80663 -11.16480 -10.57773 -10.38860 -10.21482 -9.44003 -8.88664 -8.54849 -6.07388 -0.28500 0.00854 1.13993 1.39975 1.48126 1.54278 2.11323 2.34751 2.60878 2.78972 3.42140 3.50276 3.58532 3.72818 4.09352 4.22554 4.24034 4.62677 4.68988 4.81131 4.84719 5.09675 5.19401 5.23705 5.25916 5.56186 5.65544 6.04411 6.23831 6.57547 6.96859 7.07593 7.26352 7.83609 8.37030 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.038939 B = 0.008665 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.899216 B = 3230.445922 C = 3861.935267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.363 5.363 3 C -0.327 4.327 4 H 0.102 0.898 5 C 0.002 3.998 6 N -0.869 5.869 7 Si 1.007 2.993 8 H -0.261 1.261 9 H -0.272 1.272 10 H -0.263 1.263 11 C 0.351 3.649 12 N -0.634 5.634 13 C 0.342 3.658 14 N -0.625 5.625 15 C 0.133 3.867 16 C -0.109 4.109 17 C -0.111 4.111 18 C 0.050 3.950 19 N -0.461 5.461 20 C -0.038 4.038 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.286 0.714 25 H 0.209 0.791 26 H 0.159 0.841 27 H 0.184 0.816 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -6.640 -1.868 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.046 5.046 3 C -0.457 4.457 4 H 0.120 0.880 5 C -0.205 4.205 6 N -0.502 5.502 7 Si 0.828 3.172 8 H -0.185 1.185 9 H -0.197 1.197 10 H -0.187 1.187 11 C 0.097 3.903 12 N -0.368 5.368 13 C 0.050 3.950 14 N -0.355 5.355 15 C 0.005 3.995 16 C -0.137 4.137 17 C -0.132 4.132 18 C -0.121 4.121 19 N -0.171 5.171 20 C -0.173 4.173 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.225 0.775 26 H 0.177 0.823 27 H 0.201 0.799 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.851 -5.388 -1.807 6.358 hybrid contribution -0.018 0.072 0.138 0.156 sum -2.869 -5.316 -1.669 6.267 Atomic orbital electron populations 1.21702 0.77010 1.01398 1.00460 1.42995 1.06544 1.02439 1.52575 1.20228 1.04621 0.85379 1.35492 0.88019 1.26556 0.96515 1.04433 0.93007 1.70087 1.23535 1.33347 1.23222 0.84719 0.79161 0.74804 0.78491 1.18521 1.19661 1.18732 1.18986 0.88901 0.85659 0.96720 1.67821 1.06291 1.32039 1.30654 1.24862 1.01011 0.82129 0.87017 1.68685 1.08815 1.28065 1.29903 1.19924 0.91188 0.94051 0.94325 1.21281 0.95191 0.95799 1.01464 1.22297 0.93796 1.00931 0.96197 1.23442 1.01842 0.87262 0.99540 1.67919 1.08104 1.30804 1.10322 1.19814 0.92082 0.94340 1.11071 0.92712 0.90692 0.92796 0.90375 0.77475 0.82342 0.79893 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.57 7.80 127.77 1.00 7.57 15 2 N -0.36 -19.32 3.05 -539.40 -1.65 -20.97 15 3 C -0.33 -17.51 9.18 84.10 0.77 -16.74 15 4 H 0.10 5.58 7.51 -2.91 -0.02 5.56 15 5 C 0.00 0.09 4.89 84.92 0.42 0.50 15 6 N -0.87 -44.27 11.20 21.67 0.24 -44.03 15 7 Si 1.01 38.75 29.58 68.60 2.03 40.78 15 8 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 9 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 11 C 0.35 18.45 7.39 134.08 0.99 19.44 15 12 N -0.63 -32.20 9.40 -196.52 -1.85 -34.04 15 13 C 0.34 14.92 12.23 180.90 2.21 17.13 15 14 N -0.63 -27.24 10.45 -193.82 -2.02 -29.27 15 15 C 0.13 5.71 6.62 40.20 0.27 5.98 15 16 C -0.11 -3.53 10.14 22.48 0.23 -3.30 15 17 C -0.11 -2.87 10.03 22.17 0.22 -2.65 15 18 C 0.05 1.53 11.15 85.04 0.95 2.47 15 19 N -0.46 -19.22 6.41 -187.99 -1.20 -20.43 15 20 C -0.04 -1.80 6.56 40.68 0.27 -1.54 15 21 H 0.05 2.69 7.20 -2.39 -0.02 2.68 15 22 H 0.07 3.65 6.00 -2.38 -0.01 3.64 15 23 H 0.05 2.42 7.20 -2.38 -0.02 2.40 15 24 H 0.29 13.36 8.31 -92.71 -0.77 12.59 15 25 H 0.21 7.16 8.06 -2.91 -0.02 7.14 15 26 H 0.16 4.25 8.06 -2.91 -0.02 4.22 15 27 H 0.18 2.75 8.06 -2.91 -0.02 2.73 15 28 H 0.19 4.11 8.06 -2.91 -0.02 4.09 15 Total: -1.00 -65.65 245.84 4.05 -61.60 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.19 Total: 17.49 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 7.32 Total: 28.86 kcal Atomic # 7 Polarization: -142.25 SS G_CDS: -6.48 Total: -148.73 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -65.65 4.05 -61.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798981.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.616 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds