Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36872 * 119.99879 * 2 1 4 4 H 1.08008 * 120.00143 * 221.34577 * 3 2 1 5 5 C 1.38798 * 120.00360 * 41.34805 * 3 2 1 6 6 N 1.31584 * 119.99827 * 7.80228 * 5 3 2 7 7 Si 1.86799 * 120.00362 * 187.79865 * 5 3 2 8 8 H 1.48502 * 109.46905 * 89.99933 * 7 5 3 9 9 H 1.48501 * 109.47440 * 210.00031 * 7 5 3 10 10 H 1.48498 * 109.47293 * 330.00375 * 7 5 3 11 11 C 1.38942 * 119.99652 * 180.02562 * 2 1 3 12 12 N 1.32471 * 119.71292 * 6.09648 * 11 2 1 13 13 C 1.31879 * 121.65413 * 180.02562 * 12 11 2 14 14 C 1.38274 * 120.90069 * 0.02562 * 13 12 11 15 15 Cl 1.73594 * 120.33512 * 180.02562 * 14 13 12 16 16 C 1.38927 * 119.33199 * 0.02562 * 14 13 12 17 17 C 1.38520 * 118.47512 * 359.97438 * 16 14 13 18 18 F 1.35097 * 120.46978 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.47106 * 264.76783 * 1 2 3 20 20 H 1.08996 * 109.46701 * 24.77076 * 1 2 3 21 21 H 1.08997 * 109.47141 * 144.76589 * 1 2 3 22 22 H 0.96999 * 120.00381 * 180.02562 * 6 5 3 23 23 H 1.08005 * 119.55126 * 180.27888 * 13 12 11 24 24 H 1.07997 * 120.76476 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0276 1.3020 -0.6179 5 6 1.7150 2.2376 0.7941 6 7 0.7417 2.0504 1.6596 7 14 2.5120 3.9194 0.6342 8 1 1.7855 4.7164 -0.3867 9 1 2.4551 4.6206 1.9421 10 1 3.9290 3.7584 0.2201 11 6 2.1597 -1.2033 -0.0005 12 7 1.4972 -2.3439 -0.1232 13 6 2.1176 -3.5076 -0.1280 14 6 3.4928 -3.5796 -0.0036 15 17 4.2945 -5.1193 -0.0124 16 6 4.2266 -2.4073 0.1285 17 6 3.5477 -1.1999 0.1302 18 9 4.2211 -0.0355 0.2557 19 1 -0.3633 -0.0937 1.0233 20 1 -0.3632 0.9331 -0.4306 21 1 -0.3633 -0.8394 -0.5929 22 1 0.4377 2.7858 2.2143 23 1 1.5441 -4.4166 -0.2346 24 1 5.3016 -2.4367 0.2277 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800696.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -2.432144 kcal Electronic energy + Delta-G solvation = -13852.666352 eV Core-core repulsion = 11128.003866 eV Total energy + Delta-G solvation = -2724.662486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.73088 -39.12295 -36.35548 -35.54951 -32.18924 -31.13246 -28.86167 -26.68861 -24.26596 -22.49708 -21.28357 -18.07216 -16.73643 -16.48259 -15.87860 -15.04794 -14.68114 -14.15328 -13.52319 -13.28233 -13.25330 -12.62450 -12.33327 -12.18560 -11.56502 -11.23831 -11.19140 -10.95421 -10.75326 -10.45098 -10.36258 -9.30804 -8.92890 -8.76444 -8.63941 -6.85319 -6.46869 -4.16752 1.92305 1.97648 2.82933 3.06485 3.11580 3.16561 3.88673 4.42046 4.48912 4.87667 5.24246 5.31214 5.46813 5.88698 6.38066 6.48536 6.51099 6.60203 6.71805 7.05592 7.22485 7.33523 7.90061 8.27162 8.67936 8.94107 9.43856 10.43014 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.048967 B = 0.007977 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.674891 B = 3509.122169 C = 3965.442663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.397 5.397 3 C -0.321 4.321 4 H 0.106 0.894 5 C 0.042 3.958 6 N -0.859 5.859 7 Si 0.931 3.069 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.264 1.264 11 C 0.345 3.655 12 N -0.542 5.542 13 C 0.170 3.830 14 C -0.194 4.194 15 Cl -0.097 7.097 16 C -0.064 4.064 17 C -0.016 4.016 18 F -0.125 7.125 19 H 0.056 0.944 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.274 0.726 23 H 0.150 0.850 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -5.459 -2.398 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.083 5.083 3 C -0.450 4.450 4 H 0.123 0.877 5 C -0.166 4.166 6 N -0.492 5.492 7 Si 0.756 3.244 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.188 1.188 11 C 0.101 3.899 12 N -0.263 5.263 13 C 0.006 3.994 14 C -0.230 4.230 15 Cl -0.069 7.069 16 C -0.090 4.090 17 C -0.045 4.045 18 F -0.104 7.104 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.167 0.833 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.601 -4.981 -2.306 5.718 hybrid contribution 1.433 0.831 0.242 1.674 sum 3.034 -4.150 -2.064 5.540 Atomic orbital electron populations 1.21469 0.79899 0.99935 1.01259 1.42556 1.05114 1.00876 1.59790 1.19946 1.12927 0.87324 1.24793 0.87689 1.25674 0.96319 1.00924 0.93651 1.70002 1.26174 1.33112 1.19894 0.85842 0.80028 0.80529 0.77976 1.19920 1.20499 1.18800 1.18917 0.87574 0.87418 0.95949 1.67399 1.37829 0.96543 1.24530 1.22092 0.89494 0.95134 0.92676 1.20840 0.93152 0.85474 1.23515 1.98266 1.80583 1.30054 1.98014 1.20906 0.99921 0.89745 0.98431 1.17552 0.89425 0.81859 1.15645 1.91459 1.79625 1.45228 1.94075 0.92530 0.92125 0.93322 0.91582 0.83293 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.71 8.84 59.85 0.53 3.24 14 2 N -0.40 -10.02 3.02 -122.36 -0.37 -10.39 14 3 C -0.32 -8.31 7.54 -15.09 -0.11 -8.42 14 4 H 0.11 2.71 6.30 -52.48 -0.33 2.38 14 5 C 0.04 1.07 5.17 -17.45 -0.09 0.98 14 6 N -0.86 -22.44 11.76 55.49 0.65 -21.78 14 7 Si 0.93 19.60 29.56 -169.99 -5.02 14.58 14 8 H -0.27 -5.61 7.11 56.52 0.40 -5.21 14 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 10 H -0.26 -5.53 7.11 56.52 0.40 -5.13 14 11 C 0.34 8.22 7.34 -154.92 -1.14 7.09 14 12 N -0.54 -11.80 9.16 -12.33 -0.11 -11.91 14 13 C 0.17 3.15 10.97 -17.52 -0.19 2.96 14 14 C -0.19 -3.51 6.34 -39.31 -0.25 -3.76 14 15 Cl -0.10 -1.48 28.98 -51.86 -1.50 -2.98 14 16 C -0.06 -1.23 9.96 -39.22 -0.39 -1.62 14 17 C -0.02 -0.37 7.19 -39.04 -0.28 -0.65 14 18 F -0.13 -2.96 13.75 2.25 0.03 -2.93 14 19 H 0.06 1.37 7.71 -51.93 -0.40 0.97 14 20 H 0.06 1.39 7.75 -51.93 -0.40 0.99 14 21 H 0.05 1.03 7.45 -51.93 -0.39 0.64 14 22 H 0.27 6.72 8.31 -40.82 -0.34 6.39 14 23 H 0.15 2.28 8.06 -52.48 -0.42 1.85 14 24 H 0.13 2.24 8.06 -52.49 -0.42 1.82 14 LS Contribution 234.55 15.07 3.53 3.53 Total: -1.00 -26.62 234.55 -6.22 -32.84 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -1.50 Total: -0.76 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.93 Total: -0.19 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.17 Total: -44.09 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.03 Total: -2.93 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -1.50 Total: -2.98 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -26.62 -6.22 -32.84 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800696.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.405 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds