Wall clock time and date at job start Sun Mar 29 2020 21:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47113 * 2 1 4 4 C 1.52991 * 109.47092 * 120.00233 * 2 1 3 5 5 C 1.53005 * 109.47148 * 184.99860 * 4 2 1 6 6 C 1.50704 * 109.47089 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99652 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46977 * 90.00156 * 10 8 6 12 12 H 1.48501 * 109.47123 * 209.99442 * 10 8 6 13 13 H 1.48494 * 109.47412 * 330.00194 * 10 8 6 14 14 N 1.46900 * 109.47089 * 240.00310 * 2 1 3 15 15 C 1.46895 * 111.00254 * 84.99965 * 14 2 1 16 16 H 1.08997 * 110.67192 * 328.23422 * 15 14 2 17 17 C 1.54894 * 110.75765 * 205.00052 * 15 14 2 18 18 C 1.54269 * 104.19428 * 203.55735 * 17 15 14 19 19 C 1.53873 * 106.60003 * 23.61234 * 18 17 15 20 20 H 1.09004 * 110.03274 * 119.33407 * 19 18 17 21 21 F 1.39905 * 110.03081 * 240.71262 * 19 18 17 22 22 C 1.54260 * 106.63986 * 0.02562 * 19 18 17 23 23 H 1.08995 * 109.46905 * 300.00206 * 1 2 3 24 24 H 1.09004 * 109.46962 * 60.00020 * 1 2 3 25 25 H 1.09001 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47453 * 304.99748 * 4 2 1 27 27 H 1.08999 * 109.47428 * 65.00106 * 4 2 1 28 28 H 1.08997 * 109.47204 * 300.00113 * 5 4 2 29 29 H 1.09003 * 109.46914 * 60.00331 * 5 4 2 30 30 H 0.97001 * 120.00148 * 179.97438 * 9 8 6 31 31 H 1.00901 * 111.00116 * 321.04645 * 14 2 1 32 32 H 1.08996 * 110.48665 * 84.88261 * 17 15 14 33 33 H 1.09005 * 110.48599 * 322.23519 * 17 15 14 34 34 H 1.09002 * 110.03628 * 264.32050 * 18 17 15 35 35 H 1.09001 * 110.07033 * 142.91795 * 18 17 15 36 36 H 1.09004 * 110.48371 * 95.04842 * 22 19 18 37 37 H 1.09002 * 110.48796 * 217.68975 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6133 1.3136 6 6 4.0671 -1.3233 2.5444 7 1 3.3686 -1.8038 3.2135 8 6 5.4183 -1.3593 2.8162 9 7 6.2689 -0.7747 2.0012 10 14 6.0409 -2.2387 4.3422 11 1 6.3214 -3.6598 4.0148 12 1 7.2870 -1.5849 4.8166 13 1 5.0093 -2.1707 5.4082 14 7 2.0197 -0.6924 -1.1995 15 6 2.0825 0.2226 -2.3469 16 1 1.2993 0.9778 -2.2801 17 6 1.9781 -0.5599 -3.6795 18 6 2.6452 0.3676 -4.7161 19 6 3.5989 1.2874 -3.9336 20 1 4.6230 1.1431 -4.2780 21 9 3.2210 2.6239 -4.1016 22 6 3.4794 0.8870 -2.4487 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2055 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 7.2195 -0.7997 2.1926 31 1 1.4495 -1.4978 -1.4101 32 1 0.9339 -0.7336 -3.9392 33 1 2.5173 -1.5048 -3.6103 34 1 1.8880 0.9625 -5.2268 35 1 3.2064 -0.2230 -5.4402 36 1 4.2610 0.1758 -2.1813 37 1 3.5304 1.7691 -1.8104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:57 Heat of formation + Delta-G solvation = -100.372452 kcal Electronic energy + Delta-G solvation = -16370.244155 eV Core-core repulsion = 13673.550689 eV Total energy + Delta-G solvation = -2696.693466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.59703 -39.48787 -37.04797 -35.04530 -32.45847 -30.46309 -29.56720 -27.24045 -26.77996 -23.23688 -21.92077 -21.31411 -20.87255 -18.35732 -17.82994 -17.01307 -16.49491 -16.41408 -15.79658 -15.54339 -15.00791 -14.63625 -14.26384 -14.25077 -14.00903 -13.76655 -13.16395 -13.08928 -12.84143 -12.60643 -12.39176 -12.29226 -11.99153 -11.79993 -11.72066 -11.56322 -11.55342 -11.45712 -11.20180 -10.92749 -10.47383 -9.13900 -8.12776 -6.23167 1.40246 1.41912 1.52640 2.44313 3.17975 3.19737 3.41464 3.57183 3.75840 4.05582 4.11648 4.27032 4.32846 4.40333 4.46157 4.50082 4.56722 4.73140 4.78080 4.93556 4.95277 5.01761 5.04805 5.08716 5.21819 5.28598 5.29334 5.40149 5.49092 5.60330 5.90695 6.04443 6.31180 6.35906 6.69510 6.96598 7.44840 8.98311 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.006076 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.424944 B = 4607.156458 C = 5202.498585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.051 0.949 4 C -0.088 4.088 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.265 1.265 14 N -0.681 5.681 15 C 0.084 3.916 16 H 0.051 0.949 17 C -0.117 4.117 18 C -0.137 4.137 19 C 0.081 3.919 20 H 0.098 0.902 21 F -0.229 7.229 22 C -0.142 4.142 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.007 0.993 29 H -0.028 1.028 30 H 0.260 0.740 31 H 0.347 0.653 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.355 0.885 -12.733 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 N -0.312 5.312 15 C -0.026 4.026 16 H 0.069 0.931 17 C -0.155 4.155 18 C -0.175 4.175 19 C 0.045 3.955 20 H 0.116 0.884 21 F -0.210 7.210 22 C -0.181 4.181 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.025 0.975 29 H -0.009 1.009 30 H 0.069 0.931 31 H 0.167 0.833 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.534 1.025 -12.594 15.829 hybrid contribution -0.056 0.082 0.813 0.819 sum -9.590 1.107 -11.780 15.231 Atomic orbital electron populations 1.22390 0.95357 1.02647 1.02293 1.21524 0.93322 0.96600 0.90521 0.93059 1.21457 0.96616 0.99168 0.95394 1.18805 0.92131 0.93597 0.95117 1.21822 0.92510 1.34351 1.09458 0.92701 1.25947 0.97407 0.96500 0.99987 1.70122 1.02507 1.45588 1.39017 0.85518 0.77746 0.78657 0.79518 1.19765 1.20887 1.18902 1.60368 1.58234 1.09612 1.03023 1.22493 0.95134 0.94365 0.90595 0.93057 1.22496 1.02074 0.98692 0.92213 1.22681 0.98906 0.97764 0.98163 1.22384 1.00689 0.76382 0.96064 0.88374 1.92775 1.93399 1.38238 1.96596 1.22985 0.99578 1.00594 0.94954 0.91924 0.92067 0.91512 0.93519 0.93098 0.97477 1.00937 0.93087 0.83266 0.89363 0.90203 0.89586 0.88197 0.90792 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.15 71.98 0.66 -3.59 16 2 C 0.09 3.05 2.46 44.91 0.11 3.16 16 3 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 4 C -0.09 -3.71 4.83 30.59 0.15 -3.56 16 5 C 0.04 2.22 4.86 29.85 0.15 2.37 16 6 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 7 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 9 N -0.93 -58.47 13.29 21.45 0.28 -58.18 16 10 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 14 N -0.68 -21.36 5.60 -462.68 -2.59 -23.96 16 15 C 0.08 2.28 2.97 46.25 0.14 2.42 16 16 H 0.05 1.38 7.23 -2.39 -0.02 1.36 16 17 C -0.12 -2.31 6.21 31.67 0.20 -2.12 16 18 C -0.14 -2.52 6.65 31.32 0.21 -2.31 16 19 C 0.08 2.00 4.68 31.32 0.15 2.15 16 20 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 21 F -0.23 -6.55 17.05 44.97 0.77 -5.78 16 22 C -0.14 -4.44 6.32 31.71 0.20 -4.24 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.36 7.52 -2.38 -0.02 1.34 16 25 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 26 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.01 0.40 7.75 -2.39 -0.02 0.39 16 29 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.35 9.34 8.17 -89.69 -0.73 8.61 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.09 1.45 8.02 -2.39 -0.02 1.43 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.05 1.77 8.11 -2.39 -0.02 1.75 16 Total: -1.00 -67.48 301.60 3.42 -64.06 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.29 Total: 13.47 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.65 Total: -37.17 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.31 Total: -82.14 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.77 Total: -5.78 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.48 3.42 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.314 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds