Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47433 * 2 1 4 4 C 1.53000 * 109.47056 * 240.00155 * 2 1 3 5 5 C 1.53001 * 109.47355 * 175.00075 * 4 2 1 6 6 C 1.50694 * 109.47168 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99854 * 179.72538 * 8 6 5 11 11 H 1.48498 * 109.46909 * 90.00086 * 10 8 6 12 12 H 1.48497 * 109.46701 * 209.99996 * 10 8 6 13 13 H 1.48500 * 109.46867 * 330.00101 * 10 8 6 14 14 N 1.46902 * 109.47438 * 120.00007 * 2 1 3 15 15 C 1.46902 * 110.99761 * 275.00187 * 14 2 1 16 16 H 1.08997 * 110.01561 * 34.29343 * 15 14 2 17 17 C 1.53872 * 110.02930 * 155.68700 * 15 14 2 18 18 C 1.54266 * 106.59761 * 119.28088 * 17 15 14 19 19 C 1.54890 * 104.19623 * 23.61147 * 18 17 15 20 20 H 1.09000 * 110.76074 * 80.55507 * 19 18 17 21 21 F 1.39895 * 110.75689 * 203.74432 * 19 18 17 22 22 C 1.54266 * 110.02713 * 272.90488 * 15 14 2 23 23 H 1.09002 * 109.46404 * 300.00291 * 1 2 3 24 24 H 1.08999 * 109.46805 * 59.99966 * 1 2 3 25 25 H 1.08995 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46966 * 54.99762 * 4 2 1 27 27 H 1.09002 * 109.46807 * 294.99784 * 4 2 1 28 28 H 1.08998 * 109.46837 * 59.99832 * 5 4 2 29 29 H 1.09002 * 109.46926 * 299.99636 * 5 4 2 30 30 H 0.97001 * 119.99646 * 180.02562 * 9 8 6 31 31 H 1.00903 * 110.99631 * 38.95401 * 14 2 1 32 32 H 1.08999 * 110.03502 * 238.56804 * 17 15 14 33 33 H 1.09002 * 110.03436 * 359.95110 * 17 15 14 34 34 H 1.08998 * 110.48562 * 142.28561 * 18 17 15 35 35 H 1.09002 * 110.48985 * 264.92985 * 18 17 15 36 36 H 1.08999 * 110.48651 * 335.78181 * 22 15 14 37 37 H 1.08998 * 110.48888 * 98.43327 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3688 -1.8053 -3.2126 8 6 5.4185 -1.3605 -2.8157 9 7 6.2690 -0.7751 -2.0011 10 14 6.0418 -2.2483 -4.3365 11 1 6.0901 -1.3000 -5.4782 12 1 7.4038 -2.7794 -4.0761 13 1 5.1268 -3.3711 -4.6639 14 7 2.0198 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2683 0.9452 2.2928 17 6 1.9949 -0.5730 3.6610 18 6 3.3023 -0.2963 4.4317 19 6 3.7952 1.0599 3.8689 20 1 3.2642 1.8886 4.3373 21 9 5.1764 1.1966 4.0437 22 6 3.4396 0.9561 2.3641 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6053 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.9994 -1.0728 -0.4261 29 1 3.8532 0.4370 -1.3575 30 1 7.2196 -0.8003 -2.1925 31 1 1.4497 -1.4979 1.4100 32 1 1.1386 -0.2361 4.2451 33 1 1.9049 -1.6381 3.4473 34 1 3.1053 -0.2166 5.5008 35 1 4.0342 -1.0797 4.2351 36 1 4.1939 0.3753 1.8332 37 1 3.3423 1.9489 1.9249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = -80.161508 kcal Electronic energy + Delta-G solvation = -16411.553389 eV Core-core repulsion = 13715.736335 eV Total energy + Delta-G solvation = -2695.817054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.34848 -38.47705 -35.70189 -32.95849 -30.75598 -28.94820 -28.50231 -25.97837 -24.87838 -21.42730 -20.91326 -20.00121 -19.60956 -16.62950 -16.08785 -15.90776 -15.20635 -14.52066 -14.40522 -14.19781 -13.99127 -13.34552 -12.83400 -12.72126 -12.39856 -12.30308 -11.82290 -11.61100 -11.22651 -11.19532 -10.91446 -10.77253 -10.70181 -10.47669 -10.43832 -10.38609 -10.11359 -9.59980 -9.18125 -8.86473 -8.20451 -7.88061 -5.85113 -3.86357 3.39167 3.45319 3.48616 4.36621 4.41150 4.56747 4.60982 4.86468 4.91976 5.25794 5.30749 5.45091 5.50140 5.51761 5.54710 5.62915 5.73226 5.79711 5.85567 5.99343 6.02928 6.22251 6.22972 6.28290 6.43687 6.65582 6.72282 6.91553 7.34112 7.55275 7.82580 7.88077 8.11168 8.26427 8.60948 9.22615 9.76100 11.25757 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.006797 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.402738 B = 4118.213908 C = 4999.892961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.664 5.664 15 C 0.087 3.913 16 H 0.045 0.955 17 C -0.123 4.123 18 C -0.143 4.143 19 C 0.083 3.917 20 H 0.084 0.916 21 F -0.211 7.211 22 C -0.140 4.140 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.006 0.994 30 H 0.258 0.742 31 H 0.336 0.664 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 2.746 12.041 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.296 5.296 15 C -0.023 4.023 16 H 0.062 0.938 17 C -0.161 4.161 18 C -0.181 4.181 19 C 0.046 3.954 20 H 0.102 0.898 21 F -0.192 7.192 22 C -0.178 4.178 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.484 2.849 11.905 15.485 hybrid contribution -0.470 -0.320 -0.682 0.887 sum -9.953 2.529 11.223 15.213 Atomic orbital electron populations 1.22539 0.98676 1.01493 1.01183 1.21782 0.90812 0.98391 0.91723 0.91055 1.21628 1.00678 0.98324 0.93019 1.18985 0.88230 0.96430 0.96997 1.21349 0.91845 1.34075 1.08516 0.93174 1.25001 0.97149 0.95804 0.96469 1.69979 1.02160 1.44399 1.36753 0.86694 0.78138 0.80035 0.83682 1.20874 1.21333 1.20043 1.60669 1.57632 1.08565 1.02697 1.21995 0.96136 0.94054 0.90155 0.93754 1.22279 0.96985 1.01284 0.95540 1.22850 0.98327 0.97379 0.99551 1.22590 0.76504 0.98400 0.97898 0.89771 1.92801 1.32755 1.97132 1.96512 1.23052 0.99034 1.01464 0.94291 0.93825 0.92295 0.92793 0.93615 0.93519 0.94926 0.97548 0.93247 0.84532 0.91695 0.90417 0.91131 0.89888 0.87850 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.15 37.16 0.34 -2.04 16 2 C 0.08 1.36 2.43 -67.71 -0.16 1.20 16 3 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 4 C -0.10 -2.04 4.83 -26.73 -0.13 -2.17 16 5 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 6 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 10 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.66 -10.37 5.46 -98.57 -0.54 -10.91 16 15 C 0.09 1.15 3.03 -66.59 -0.20 0.95 16 16 H 0.04 0.55 7.16 -51.93 -0.37 0.18 16 17 C -0.12 -1.33 6.48 -25.61 -0.17 -1.49 16 18 C -0.14 -1.63 6.63 -25.07 -0.17 -1.80 16 19 C 0.08 1.07 4.71 -24.69 -0.12 0.96 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 21 F -0.21 -3.40 17.22 2.25 0.04 -3.36 16 22 C -0.14 -2.11 6.17 -25.03 -0.15 -2.27 16 23 H 0.04 0.51 7.46 -51.93 -0.39 0.12 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.34 4.69 7.77 -39.29 -0.31 4.38 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 1.98 8.05 -51.93 -0.42 1.56 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -31.23 300.55 -8.00 -39.24 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.44 Total: 0.07 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.30 Total: -19.89 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.20 Total: -37.86 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.23 -8.00 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.923 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds