Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47433 * 2 1 4 4 C 1.53000 * 109.47056 * 240.00155 * 2 1 3 5 5 C 1.53001 * 109.47355 * 175.00075 * 4 2 1 6 6 C 1.50694 * 109.47168 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99854 * 179.72538 * 8 6 5 11 11 H 1.48498 * 109.46909 * 90.00086 * 10 8 6 12 12 H 1.48497 * 109.46701 * 209.99996 * 10 8 6 13 13 H 1.48500 * 109.46867 * 330.00101 * 10 8 6 14 14 N 1.46902 * 109.47438 * 120.00007 * 2 1 3 15 15 C 1.46902 * 110.99761 * 275.00187 * 14 2 1 16 16 H 1.08997 * 110.01561 * 34.29343 * 15 14 2 17 17 C 1.53872 * 110.02930 * 155.68700 * 15 14 2 18 18 C 1.54266 * 106.59761 * 119.28088 * 17 15 14 19 19 C 1.54890 * 104.19623 * 23.61147 * 18 17 15 20 20 H 1.09000 * 110.76074 * 80.55507 * 19 18 17 21 21 F 1.39895 * 110.75689 * 203.74432 * 19 18 17 22 22 C 1.54266 * 110.02713 * 272.90488 * 15 14 2 23 23 H 1.09002 * 109.46404 * 300.00291 * 1 2 3 24 24 H 1.08999 * 109.46805 * 59.99966 * 1 2 3 25 25 H 1.08995 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46966 * 54.99762 * 4 2 1 27 27 H 1.09002 * 109.46807 * 294.99784 * 4 2 1 28 28 H 1.08998 * 109.46837 * 59.99832 * 5 4 2 29 29 H 1.09002 * 109.46926 * 299.99636 * 5 4 2 30 30 H 0.97001 * 119.99646 * 180.02562 * 9 8 6 31 31 H 1.00903 * 110.99631 * 38.95401 * 14 2 1 32 32 H 1.08999 * 110.03502 * 238.56804 * 17 15 14 33 33 H 1.09002 * 110.03436 * 359.95110 * 17 15 14 34 34 H 1.08998 * 110.48562 * 142.28561 * 18 17 15 35 35 H 1.09002 * 110.48985 * 264.92985 * 18 17 15 36 36 H 1.08999 * 110.48651 * 335.78181 * 22 15 14 37 37 H 1.08998 * 110.48888 * 98.43327 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0672 -1.3242 -2.5439 7 1 3.3688 -1.8053 -3.2126 8 6 5.4185 -1.3605 -2.8157 9 7 6.2690 -0.7751 -2.0011 10 14 6.0418 -2.2483 -4.3365 11 1 6.0901 -1.3000 -5.4782 12 1 7.4038 -2.7794 -4.0761 13 1 5.1268 -3.3711 -4.6639 14 7 2.0198 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2683 0.9452 2.2928 17 6 1.9949 -0.5730 3.6610 18 6 3.3023 -0.2963 4.4317 19 6 3.7952 1.0599 3.8689 20 1 3.2642 1.8886 4.3373 21 9 5.1764 1.1966 4.0437 22 6 3.4396 0.9561 2.3641 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6053 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.9994 -1.0728 -0.4261 29 1 3.8532 0.4370 -1.3575 30 1 7.2196 -0.8003 -2.1925 31 1 1.4497 -1.4979 1.4100 32 1 1.1386 -0.2361 4.2451 33 1 1.9049 -1.6381 3.4473 34 1 3.1053 -0.2166 5.5008 35 1 4.0342 -1.0797 4.2351 36 1 4.1939 0.3753 1.8332 37 1 3.3423 1.9489 1.9249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = -99.551275 kcal Electronic energy + Delta-G solvation = -16412.394192 eV Core-core repulsion = 13715.736335 eV Total energy + Delta-G solvation = -2696.657857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.54130 -39.62985 -37.04638 -35.04663 -32.43570 -30.41093 -29.57620 -27.18873 -26.70799 -23.22370 -22.07400 -21.17501 -20.99627 -18.37633 -17.72149 -17.04239 -16.50610 -16.38213 -15.67300 -15.50177 -15.21597 -14.63204 -14.37571 -14.12004 -13.85507 -13.76593 -13.19557 -13.06927 -12.85186 -12.82103 -12.38784 -12.28081 -11.98619 -11.82154 -11.62875 -11.53809 -11.51964 -11.41710 -11.19623 -10.92768 -10.49142 -9.09203 -8.13797 -6.24854 1.38585 1.40726 1.51609 2.43112 3.18088 3.23445 3.39120 3.60076 3.86178 3.93384 4.08370 4.32715 4.33191 4.39445 4.48849 4.50726 4.69817 4.74128 4.79380 4.88527 4.96941 5.04336 5.06065 5.10370 5.21867 5.28952 5.32261 5.40558 5.49507 5.59089 5.90110 6.03541 6.33956 6.36251 6.72010 6.95780 7.43442 8.97170 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.006797 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.402738 B = 4118.213908 C = 4999.892961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.263 1.263 14 N -0.689 5.689 15 C 0.091 3.909 16 H 0.065 0.935 17 C -0.114 4.114 18 C -0.140 4.140 19 C 0.079 3.921 20 H 0.121 0.879 21 F -0.233 7.233 22 C -0.145 4.145 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.002 0.998 29 H -0.028 1.028 30 H 0.260 0.740 31 H 0.346 0.654 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 2.319 12.595 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.187 1.187 14 N -0.321 5.321 15 C -0.019 4.019 16 H 0.083 0.917 17 C -0.151 4.151 18 C -0.178 4.178 19 C 0.043 3.957 20 H 0.139 0.861 21 F -0.214 7.214 22 C -0.184 4.184 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.020 0.980 29 H -0.009 1.009 30 H 0.069 0.931 31 H 0.167 0.833 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.622 2.415 12.461 17.210 hybrid contribution 0.241 -0.159 -0.856 0.903 sum -11.381 2.256 11.606 16.411 Atomic orbital electron populations 1.22380 0.95132 1.02573 1.02505 1.21526 0.93420 0.96711 0.90300 0.92634 1.21468 0.96406 0.99141 0.95730 1.18788 0.92317 0.93525 0.94913 1.21837 0.92511 1.34374 1.09480 0.92609 1.25988 0.97438 0.96557 1.00033 1.70140 1.02522 1.45749 1.38927 0.85502 0.77560 0.79009 0.79287 1.19782 1.20890 1.18708 1.60498 1.58535 1.09704 1.03396 1.22028 0.95095 0.94265 0.90541 0.91702 1.22266 0.97734 1.00982 0.94148 1.22854 0.98049 0.95427 1.01439 1.22898 0.75509 1.00906 0.96425 0.86146 1.92755 1.34837 1.97344 1.96493 1.23029 0.99117 1.00612 0.95672 0.91504 0.91969 0.91809 0.93411 0.93351 0.97951 1.00936 0.93122 0.83318 0.88200 0.90399 0.88046 0.92221 0.93272 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.15 71.98 0.66 -3.30 16 2 C 0.09 2.95 2.43 44.92 0.11 3.06 16 3 H 0.06 1.98 7.75 -2.39 -0.02 1.96 16 4 C -0.09 -3.76 4.83 30.59 0.15 -3.61 16 5 C 0.04 2.31 4.86 29.85 0.15 2.46 16 6 C -0.54 -32.54 9.11 25.60 0.23 -32.30 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 9 N -0.93 -59.87 13.29 21.45 0.28 -59.58 16 10 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 14 N -0.69 -21.33 5.46 -465.75 -2.54 -23.87 16 15 C 0.09 2.28 3.03 45.64 0.14 2.42 16 16 H 0.07 1.40 7.16 -2.39 -0.02 1.38 16 17 C -0.11 -2.14 6.48 31.32 0.20 -1.93 16 18 C -0.14 -2.96 6.63 31.67 0.21 -2.75 16 19 C 0.08 1.99 4.71 31.92 0.15 2.14 16 20 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 21 F -0.23 -7.70 17.22 44.97 0.77 -6.93 16 22 C -0.15 -4.56 6.17 31.70 0.20 -4.36 16 23 H 0.07 1.30 7.46 -2.39 -0.02 1.29 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.00 0.13 7.75 -2.39 -0.02 0.11 16 29 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.35 9.21 7.77 -89.69 -0.70 8.52 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.50 7.48 -2.39 -0.02 1.48 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 2.06 8.05 -2.39 -0.02 2.04 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -71.01 300.55 3.52 -67.49 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.33 Total: 12.52 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.65 Total: -37.89 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.26 Total: -83.46 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.77 Total: -6.93 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.01 3.52 -67.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.060 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds