Wall clock time and date at job start Sun Mar 29 2020 21:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99930 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46757 * 90.00257 * 10 8 6 12 12 H 1.48498 * 109.47220 * 210.00166 * 10 8 6 13 13 H 1.48502 * 109.46679 * 330.00220 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 H 1.09005 * 112.84993 * 314.66714 * 16 15 14 18 18 C 1.53776 * 113.61583 * 85.86202 * 16 15 14 19 19 C 1.53952 * 87.02043 * 139.95631 * 18 16 15 20 20 H 1.09005 * 113.67022 * 220.07356 * 19 18 16 21 21 F 1.39897 * 113.54043 * 89.18919 * 19 18 16 22 22 C 1.53776 * 113.61718 * 183.47422 * 16 15 14 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 27 27 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 28 28 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 29 29 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 30 30 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 31 31 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 32 32 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 33 33 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 34 34 H 1.08998 * 113.61434 * 254.53310 * 18 16 15 35 35 H 1.08995 * 113.61729 * 25.43786 * 18 16 15 36 36 H 1.09002 * 113.61824 * 334.56404 * 22 16 15 37 37 H 1.09002 * 113.61716 * 105.46969 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 5.8570 -1.9802 -3.8894 10 14 6.6267 -0.5297 -1.6579 11 1 7.0614 -1.4973 -0.6187 12 1 7.8090 -0.0645 -2.4267 13 1 5.9700 0.6330 -1.0081 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 1 2.1192 -1.5045 3.7035 18 6 4.1301 -0.5821 3.6698 19 6 3.9628 -0.3559 5.1834 20 1 4.7002 0.3252 5.6082 21 9 3.8319 -1.5415 5.9144 22 6 2.6195 0.3171 4.8555 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2618 -2.1369 28 1 3.8533 0.4369 -1.3572 29 1 3.9995 -1.0728 -0.4258 30 1 6.8076 -2.0059 -4.0804 31 1 2.9173 -1.1205 1.0288 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5525 34 1 4.5523 -1.5546 3.4167 35 1 4.6262 0.2421 3.1574 36 1 2.7019 1.3877 4.6679 37 1 1.8241 0.0695 5.5584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:32 Heat of formation + Delta-G solvation = -52.889655 kcal Electronic energy + Delta-G solvation = -16155.726914 eV Core-core repulsion = 13461.092456 eV Total energy + Delta-G solvation = -2694.634458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.76759 -38.71673 -36.76191 -33.18803 -31.52379 -29.63372 -26.74480 -25.94359 -25.15749 -22.35428 -21.07184 -19.86901 -19.32470 -16.94305 -16.43484 -15.84833 -15.56187 -15.28383 -14.91609 -14.27939 -13.79850 -13.46565 -13.03996 -12.88981 -12.63932 -12.48989 -12.39032 -11.89923 -11.62240 -11.41431 -11.23903 -10.99143 -10.93314 -10.54471 -10.31958 -10.18409 -9.91314 -9.77857 -9.45547 -9.19253 -8.56250 -8.11180 -6.06053 -4.03837 3.26815 3.34391 3.36154 4.07496 4.11401 4.39785 4.42165 4.54040 4.60317 4.81695 5.27042 5.37485 5.38854 5.40813 5.45037 5.56828 5.65770 5.68731 5.80595 5.85089 5.91705 5.96355 6.10043 6.24138 6.34042 6.41209 6.42474 6.72897 6.84405 7.25726 7.28811 7.51292 7.75036 7.79210 8.52891 8.99671 9.56348 11.07575 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.006937 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.938163 B = 4035.561447 C = 5062.153135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.879 3.121 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.687 5.687 15 C 0.069 3.931 16 C -0.105 4.105 17 H 0.103 0.897 18 C -0.164 4.164 19 C 0.063 3.937 20 H 0.093 0.907 21 F -0.199 7.199 22 C -0.156 4.156 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.263 0.737 31 H 0.349 0.651 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 6.382 16.686 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.055 0.945 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.542 5.542 10 Si 0.707 3.293 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.321 5.321 15 C -0.060 4.060 16 C -0.124 4.124 17 H 0.121 0.879 18 C -0.202 4.202 19 C 0.026 3.974 20 H 0.111 0.889 21 F -0.180 7.180 22 C -0.194 4.194 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.698 6.057 16.756 19.035 hybrid contribution 1.585 0.854 0.294 1.825 sum -5.112 6.912 17.050 19.095 Atomic orbital electron populations 1.21775 0.95458 1.01900 1.00241 1.21650 0.94897 0.95939 0.90532 0.94539 1.21664 0.98008 1.00136 0.94639 1.19604 0.91998 0.96454 0.97112 1.21133 0.92918 1.34216 1.07365 0.90976 1.25046 0.98414 0.94949 0.95101 1.69917 1.14591 1.43425 1.26280 0.86790 0.80861 0.80403 0.81288 1.20207 1.21394 1.19269 1.60582 1.34399 1.32660 1.04491 1.21929 1.00075 0.93665 0.90362 1.22613 0.95403 1.00311 0.94081 0.87883 1.23730 0.97714 1.04249 0.94510 1.22414 0.99375 0.83569 0.92012 0.88901 1.92803 1.97003 1.49367 1.78803 1.23567 0.97070 1.00502 0.98252 0.92905 0.92219 0.93772 0.91842 0.92094 0.97042 0.97325 0.92748 0.82993 0.95380 0.91211 0.89856 0.88478 0.88500 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.41 37.16 0.35 -1.55 16 2 C 0.08 1.29 2.65 -67.71 -0.18 1.11 16 3 H 0.04 0.60 7.80 -51.93 -0.40 0.20 16 4 C -0.11 -2.10 4.74 -26.73 -0.13 -2.23 16 5 C -0.01 -0.33 3.87 -27.88 -0.11 -0.44 16 6 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 7 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 10 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 N -0.69 -10.69 6.31 -106.72 -0.67 -11.36 16 15 C 0.07 0.88 5.31 -3.83 -0.02 0.86 16 16 C -0.11 -1.21 3.87 -89.81 -0.35 -1.56 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.16 -1.88 7.54 -25.83 -0.19 -2.07 16 19 C 0.06 0.64 5.70 -25.83 -0.15 0.49 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 21 F -0.20 -2.54 17.38 2.25 0.04 -2.50 16 22 C -0.16 -1.44 7.54 -25.92 -0.20 -1.64 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 29 H 0.01 0.20 5.85 -51.93 -0.30 -0.11 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.35 5.94 6.47 -39.29 -0.25 5.68 16 32 H 0.03 0.36 7.79 -51.93 -0.40 -0.04 16 33 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.06 7.92 -51.93 -0.41 0.65 16 36 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -30.22 299.08 -7.74 -37.96 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.31 Total: 1.94 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -1.40 Total: -20.31 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.10 Total: -38.54 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.22 -7.74 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds