Wall clock time and date at job start Sun Mar 29 2020 21:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99930 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00189 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46757 * 90.00257 * 10 8 6 12 12 H 1.48498 * 109.47220 * 210.00166 * 10 8 6 13 13 H 1.48502 * 109.46679 * 330.00220 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 H 1.09005 * 112.84993 * 314.66714 * 16 15 14 18 18 C 1.53776 * 113.61583 * 85.86202 * 16 15 14 19 19 C 1.53952 * 87.02043 * 139.95631 * 18 16 15 20 20 H 1.09005 * 113.67022 * 220.07356 * 19 18 16 21 21 F 1.39897 * 113.54043 * 89.18919 * 19 18 16 22 22 C 1.53776 * 113.61718 * 183.47422 * 16 15 14 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 27 27 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 28 28 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 29 29 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 30 30 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 31 31 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 32 32 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 33 33 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 34 34 H 1.08998 * 113.61434 * 254.53310 * 18 16 15 35 35 H 1.08995 * 113.61729 * 25.43786 * 18 16 15 36 36 H 1.09002 * 113.61824 * 334.56404 * 22 16 15 37 37 H 1.09002 * 113.61716 * 105.46969 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 5.8570 -1.9802 -3.8894 10 14 6.6267 -0.5297 -1.6579 11 1 7.0614 -1.4973 -0.6187 12 1 7.8090 -0.0645 -2.4267 13 1 5.9700 0.6330 -1.0081 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 1 2.1192 -1.5045 3.7035 18 6 4.1301 -0.5821 3.6698 19 6 3.9628 -0.3559 5.1834 20 1 4.7002 0.3252 5.6082 21 9 3.8319 -1.5415 5.9144 22 6 2.6195 0.3171 4.8555 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2618 -2.1369 28 1 3.8533 0.4369 -1.3572 29 1 3.9995 -1.0728 -0.4258 30 1 6.8076 -2.0059 -4.0804 31 1 2.9173 -1.1205 1.0288 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5525 34 1 4.5523 -1.5546 3.4167 35 1 4.6262 0.2421 3.1574 36 1 2.7019 1.3877 4.6679 37 1 1.8241 0.0695 5.5584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:31 Heat of formation + Delta-G solvation = -71.511853 kcal Electronic energy + Delta-G solvation = -16156.534433 eV Core-core repulsion = 13461.092456 eV Total energy + Delta-G solvation = -2695.441977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.64942 -39.67355 -38.01618 -35.16790 -33.13437 -31.15192 -27.81651 -26.94562 -26.69714 -23.40371 -22.74058 -21.18912 -20.32176 -18.96761 -17.44906 -16.79244 -16.66149 -16.48277 -16.26642 -15.83979 -15.10016 -14.77794 -14.55072 -14.25972 -13.98234 -13.60757 -13.32093 -13.24620 -13.18213 -12.86153 -12.69864 -12.25114 -11.93167 -11.88125 -11.71063 -11.57396 -11.38387 -11.24335 -11.08612 -10.89664 -10.77312 -9.29796 -8.30785 -6.35023 1.32937 1.35166 1.46319 2.33989 3.03997 3.15175 3.33374 3.46833 3.72576 3.74251 3.97928 4.04792 4.26802 4.42086 4.47109 4.58987 4.72055 4.72723 4.74575 4.83074 4.88169 4.93697 4.99938 5.04161 5.07270 5.11217 5.13545 5.41847 5.49371 5.52286 5.56295 5.65544 6.26379 6.27639 6.48239 6.73328 7.29375 8.86321 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.006937 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.938163 B = 4035.561447 C = 5062.153135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.087 3.913 3 H 0.041 0.959 4 C -0.100 4.100 5 C -0.008 4.008 6 C -0.533 4.533 7 H 0.029 0.971 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.952 3.048 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.246 1.246 14 N -0.695 5.695 15 C 0.071 3.929 16 C -0.109 4.109 17 H 0.086 0.914 18 C -0.170 4.170 19 C 0.059 3.941 20 H 0.119 0.881 21 F -0.217 7.217 22 C -0.140 4.140 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.019 0.981 30 H 0.266 0.734 31 H 0.338 0.662 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 8.448 19.127 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.138 4.138 5 C -0.045 4.045 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.593 5.593 10 Si 0.775 3.225 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.169 1.169 14 N -0.328 5.328 15 C -0.058 4.058 16 C -0.128 4.128 17 H 0.104 0.896 18 C -0.208 4.208 19 C 0.023 3.977 20 H 0.137 0.863 21 F -0.198 7.198 22 C -0.178 4.178 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.744 8.129 19.212 21.924 hybrid contribution 1.538 0.144 -0.554 1.641 sum -5.206 8.273 18.659 21.064 Atomic orbital electron populations 1.21719 0.93507 1.01942 1.01625 1.21547 0.96378 0.95347 0.89015 0.94126 1.21546 0.95636 0.99925 0.96713 1.19517 0.94438 0.95676 0.94873 1.21506 0.92661 1.34274 1.08622 0.95287 1.26070 1.00723 0.95683 0.96969 1.70082 1.15280 1.45324 1.28648 0.85627 0.77869 0.80010 0.78958 1.18945 1.21100 1.16897 1.60644 1.33728 1.33538 1.04936 1.22003 1.00951 0.93303 0.89510 1.22576 0.95313 1.00048 0.94870 0.89559 1.23781 0.97573 1.03640 0.95805 1.22620 1.00780 0.83228 0.91099 0.86325 1.92769 1.97152 1.50688 1.79153 1.23537 0.96535 1.01224 0.96536 0.92085 0.92873 0.91835 0.93200 0.92626 0.96669 0.96254 0.92526 0.84218 0.94880 0.90057 0.91636 0.87630 0.86281 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.41 71.98 0.68 -2.65 16 2 C 0.09 2.65 2.65 44.92 0.12 2.77 16 3 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 4 C -0.10 -3.92 4.74 30.60 0.15 -3.78 16 5 C -0.01 -0.35 3.87 29.85 0.12 -0.23 16 6 C -0.53 -31.10 9.66 25.60 0.25 -30.85 16 7 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 8 C 0.00 0.12 5.47 84.65 0.46 0.58 16 9 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 10 Si 0.95 44.08 27.47 68.60 1.88 45.97 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 14 N -0.70 -20.36 6.31 -491.56 -3.10 -23.46 16 15 C 0.07 1.61 5.31 86.30 0.46 2.07 16 16 C -0.11 -2.28 3.87 -10.27 -0.04 -2.32 16 17 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 18 C -0.17 -3.54 7.54 31.18 0.23 -3.30 16 19 C 0.06 1.04 5.70 31.18 0.18 1.22 16 20 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 21 F -0.22 -5.20 17.38 44.97 0.78 -4.42 16 22 C -0.14 -2.14 7.54 31.12 0.23 -1.90 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 29 H 0.02 0.86 5.85 -2.39 -0.01 0.85 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.34 11.06 6.47 -89.69 -0.58 10.48 16 32 H 0.03 0.73 7.79 -2.39 -0.02 0.71 16 33 H 0.08 1.66 7.44 -2.38 -0.02 1.64 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 2.01 7.92 -2.39 -0.02 1.99 16 36 H 0.12 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.21 299.08 3.09 -63.12 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.39 Total: 17.36 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 2.83 Total: -38.39 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.80 Total: -83.64 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -66.21 3.09 -63.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.391 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds