Wall clock time and date at job start Sun Mar 29 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46778 * 2 1 4 4 C 1.52998 * 109.47481 * 120.00218 * 2 1 3 5 5 C 1.52995 * 109.47441 * 184.99920 * 4 2 1 6 6 C 1.50700 * 109.47212 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00039 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99696 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47094 * 90.00007 * 10 8 6 12 12 H 1.48499 * 109.46812 * 209.99937 * 10 8 6 13 13 H 1.48499 * 109.47130 * 329.99723 * 10 8 6 14 14 N 1.46904 * 109.46969 * 240.00222 * 2 1 3 15 15 C 1.46905 * 110.99880 * 85.00169 * 14 2 1 16 16 C 1.52992 * 109.47008 * 180.02562 * 15 14 2 17 17 F 1.39898 * 112.90917 * 316.24660 * 16 15 14 18 18 C 1.53784 * 113.61673 * 87.49982 * 16 15 14 19 19 C 1.53778 * 87.08081 * 139.98135 * 18 16 15 20 20 C 1.53778 * 87.08449 * 334.56700 * 19 18 16 21 21 H 1.08997 * 109.47498 * 59.99681 * 1 2 3 22 22 H 1.08994 * 109.47251 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46665 * 299.99965 * 1 2 3 24 24 H 1.09003 * 109.46506 * 305.00432 * 4 2 1 25 25 H 1.08999 * 109.47010 * 64.99700 * 4 2 1 26 26 H 1.09002 * 109.47020 * 300.00442 * 5 4 2 27 27 H 1.09004 * 109.46777 * 60.00103 * 5 4 2 28 28 H 0.97009 * 119.99926 * 180.02562 * 9 8 6 29 29 H 1.00897 * 111.00055 * 208.94906 * 14 2 1 30 30 H 1.08996 * 109.47242 * 59.99586 * 15 14 2 31 31 H 1.09007 * 109.46566 * 299.99655 * 15 14 2 32 32 H 1.08993 * 113.61313 * 254.52732 * 18 16 15 33 33 H 1.09000 * 113.61578 * 25.43464 * 18 16 15 34 34 H 1.08999 * 113.61526 * 220.02035 * 19 18 16 35 35 H 1.09004 * 113.61886 * 89.12045 * 19 18 16 36 36 H 1.08998 * 113.61879 * 270.88747 * 20 19 18 37 37 H 1.08999 * 113.61887 * 139.97854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2124 8 6 5.4185 -1.3606 2.8154 9 7 6.2689 -0.7743 2.0014 10 14 6.0413 -2.2425 4.3398 11 1 6.3221 -3.6629 4.0099 12 1 7.2872 -1.5891 4.8152 13 1 5.0098 -2.1765 5.4060 14 7 2.0196 -0.6925 -1.1995 15 6 2.0825 0.2227 -2.3469 16 6 2.5950 -0.5330 -3.5745 17 9 3.6826 -1.3647 -3.2872 18 6 1.4835 -1.2281 -4.3785 19 6 2.2292 -0.7805 -5.6467 20 6 2.8140 0.3650 -4.8036 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2055 26 1 3.9995 -1.0728 0.4258 27 1 3.8532 0.4370 1.3573 28 1 7.2196 -0.8001 2.1923 29 1 2.9173 -1.1204 -1.0289 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 1.4592 -2.3095 -4.2451 33 1 0.5042 -0.7640 -4.2611 34 1 1.5688 -0.4418 -6.4449 35 1 2.9766 -1.4961 -5.9893 36 1 2.1986 1.2646 -4.8023 37 1 3.8639 0.5695 -5.0133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:50 Heat of formation + Delta-G solvation = -52.184952 kcal Electronic energy + Delta-G solvation = -16333.573054 eV Core-core repulsion = 13638.969154 eV Total energy + Delta-G solvation = -2694.603900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.44519 -38.21050 -36.80021 -33.21144 -31.46741 -29.22620 -26.74051 -25.86885 -24.94950 -22.27658 -21.26175 -19.78043 -19.25937 -16.55094 -15.96862 -15.91502 -15.25362 -14.95730 -14.48452 -14.38741 -13.87794 -13.12675 -12.96526 -12.64440 -12.49704 -12.26940 -12.04057 -11.70130 -11.49376 -11.25694 -11.08959 -11.07765 -10.89930 -10.54357 -10.41260 -10.16905 -9.86929 -9.71865 -9.24535 -8.99964 -8.32818 -7.98039 -5.97223 -3.99481 3.34458 3.40351 3.43761 4.15091 4.28625 4.48573 4.52023 4.66366 4.78372 4.91231 5.35988 5.39622 5.53697 5.54640 5.58458 5.65483 5.75026 5.76628 5.84538 5.90274 5.94975 6.07515 6.17311 6.36253 6.44363 6.52266 6.56400 6.92448 7.11124 7.47837 7.65254 7.82239 7.91920 8.02595 8.45406 9.07237 9.64558 11.14054 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.005895 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.449919 B = 4748.792996 C = 5369.700350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.037 0.963 4 C -0.114 4.114 5 C 0.019 3.981 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.685 5.685 15 C 0.051 3.949 16 C 0.098 3.902 17 F -0.186 7.186 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.158 4.158 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.358 0.642 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 2.668 -12.928 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.152 4.152 5 C -0.018 4.018 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.320 5.320 15 C -0.080 4.080 16 C 0.079 3.921 17 F -0.166 7.166 18 C -0.183 4.183 19 C -0.180 4.180 20 C -0.196 4.196 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.181 0.819 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.317 2.428 -13.094 16.846 hybrid contribution 1.391 0.050 1.071 1.756 sum -8.925 2.478 -12.023 15.177 Atomic orbital electron populations 1.21787 0.95739 1.01722 1.00097 1.21619 0.94487 0.96085 0.90578 0.94460 1.21827 0.99718 0.99470 0.94214 1.19137 0.88775 0.96841 0.97036 1.21228 0.91965 1.34220 1.08319 0.92669 1.25028 0.97087 0.95610 0.96721 1.69968 1.02350 1.44042 1.37105 0.86596 0.78270 0.79808 0.83345 1.20636 1.21283 1.19897 1.60561 1.35409 1.31859 1.04198 1.22367 1.00584 0.94293 0.90711 1.21868 0.85192 0.90670 0.94358 1.92854 1.55934 1.73186 1.94624 1.23455 0.97941 1.02138 0.94716 1.22874 1.00028 0.98181 0.96966 1.23561 1.02816 0.98085 0.95123 0.93909 0.92334 0.92989 0.92697 0.92426 0.96547 0.97014 0.93042 0.81913 0.94414 0.89899 0.90211 0.88661 0.90940 0.89845 0.88553 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.42 37.16 0.35 -1.63 16 2 C 0.08 1.45 2.65 -67.71 -0.18 1.27 16 3 H 0.04 0.68 7.80 -51.93 -0.40 0.28 16 4 C -0.11 -2.42 4.74 -26.73 -0.13 -2.54 16 5 C 0.02 0.50 4.80 -27.89 -0.13 0.37 16 6 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.68 -12.01 6.28 -106.72 -0.67 -12.68 16 15 C 0.05 0.74 5.26 -3.83 -0.02 0.72 16 16 C 0.10 1.34 1.85 -89.81 -0.17 1.18 16 17 F -0.19 -3.25 16.42 2.25 0.04 -3.21 16 18 C -0.14 -1.63 7.53 -25.92 -0.20 -1.83 16 19 C -0.14 -1.40 8.06 -25.92 -0.21 -1.61 16 20 C -0.16 -1.69 7.54 -25.92 -0.20 -1.89 16 21 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.36 7.30 5.78 -39.29 -0.23 7.07 16 30 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.08 1.03 7.14 -51.93 -0.37 0.66 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -30.55 301.23 -7.98 -38.53 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.32 Total: 2.15 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.29 Total: -19.70 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.07 Total: -39.35 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.55 -7.98 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.651 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds