Wall clock time and date at job start Sun Mar 29 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46778 * 2 1 4 4 C 1.52998 * 109.47481 * 120.00218 * 2 1 3 5 5 C 1.52995 * 109.47441 * 184.99920 * 4 2 1 6 6 C 1.50700 * 109.47212 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00039 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99696 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47094 * 90.00007 * 10 8 6 12 12 H 1.48499 * 109.46812 * 209.99937 * 10 8 6 13 13 H 1.48499 * 109.47130 * 329.99723 * 10 8 6 14 14 N 1.46904 * 109.46969 * 240.00222 * 2 1 3 15 15 C 1.46905 * 110.99880 * 85.00169 * 14 2 1 16 16 C 1.52992 * 109.47008 * 180.02562 * 15 14 2 17 17 F 1.39898 * 112.90917 * 316.24660 * 16 15 14 18 18 C 1.53784 * 113.61673 * 87.49982 * 16 15 14 19 19 C 1.53778 * 87.08081 * 139.98135 * 18 16 15 20 20 C 1.53778 * 87.08449 * 334.56700 * 19 18 16 21 21 H 1.08997 * 109.47498 * 59.99681 * 1 2 3 22 22 H 1.08994 * 109.47251 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46665 * 299.99965 * 1 2 3 24 24 H 1.09003 * 109.46506 * 305.00432 * 4 2 1 25 25 H 1.08999 * 109.47010 * 64.99700 * 4 2 1 26 26 H 1.09002 * 109.47020 * 300.00442 * 5 4 2 27 27 H 1.09004 * 109.46777 * 60.00103 * 5 4 2 28 28 H 0.97009 * 119.99926 * 180.02562 * 9 8 6 29 29 H 1.00897 * 111.00055 * 208.94906 * 14 2 1 30 30 H 1.08996 * 109.47242 * 59.99586 * 15 14 2 31 31 H 1.09007 * 109.46566 * 299.99655 * 15 14 2 32 32 H 1.08993 * 113.61313 * 254.52732 * 18 16 15 33 33 H 1.09000 * 113.61578 * 25.43464 * 18 16 15 34 34 H 1.08999 * 113.61526 * 220.02035 * 19 18 16 35 35 H 1.09004 * 113.61886 * 89.12045 * 19 18 16 36 36 H 1.08998 * 113.61879 * 270.88747 * 20 19 18 37 37 H 1.08999 * 113.61887 * 139.97854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2124 8 6 5.4185 -1.3606 2.8154 9 7 6.2689 -0.7743 2.0014 10 14 6.0413 -2.2425 4.3398 11 1 6.3221 -3.6629 4.0099 12 1 7.2872 -1.5891 4.8152 13 1 5.0098 -2.1765 5.4060 14 7 2.0196 -0.6925 -1.1995 15 6 2.0825 0.2227 -2.3469 16 6 2.5950 -0.5330 -3.5745 17 9 3.6826 -1.3647 -3.2872 18 6 1.4835 -1.2281 -4.3785 19 6 2.2292 -0.7805 -5.6467 20 6 2.8140 0.3650 -4.8036 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2055 26 1 3.9995 -1.0728 0.4258 27 1 3.8532 0.4370 1.3573 28 1 7.2196 -0.8001 2.1923 29 1 2.9173 -1.1204 -1.0289 30 1 2.7588 1.0463 -2.1182 31 1 1.0870 0.6164 -2.5525 32 1 1.4592 -2.3095 -4.2451 33 1 0.5042 -0.7640 -4.2611 34 1 1.5688 -0.4418 -6.4449 35 1 2.9766 -1.4961 -5.9893 36 1 2.1986 1.2646 -4.8023 37 1 3.8639 0.5695 -5.0133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:50 Heat of formation + Delta-G solvation = -70.705166 kcal Electronic energy + Delta-G solvation = -16334.376150 eV Core-core repulsion = 13638.969154 eV Total energy + Delta-G solvation = -2695.406996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.66780 -39.27531 -38.15851 -35.27117 -33.09569 -30.91302 -27.90749 -26.92893 -26.68619 -23.58614 -22.89057 -21.17995 -20.40525 -18.58367 -17.28974 -17.06934 -16.57748 -16.48244 -16.18706 -15.62270 -15.04376 -14.51215 -14.47557 -14.25673 -14.04699 -13.48188 -13.22956 -13.12379 -13.01793 -12.84694 -12.66939 -12.38285 -12.21464 -12.02336 -11.83044 -11.63080 -11.38855 -11.13521 -11.01671 -10.89147 -10.57150 -9.37155 -8.22026 -6.33476 1.37972 1.39899 1.50864 2.39394 3.04183 3.11461 3.34489 3.51995 3.70683 3.78614 3.85184 4.05940 4.30151 4.44341 4.46859 4.58253 4.75444 4.76335 4.77628 4.81368 4.97267 5.00421 5.02112 5.05683 5.06961 5.19884 5.20361 5.43918 5.49925 5.53637 5.66414 5.81614 6.16915 6.22853 6.32398 6.83360 7.36001 8.89678 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.005895 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.449919 B = 4748.792996 C = 5369.700350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.103 4.103 5 C 0.026 3.974 6 C -0.544 4.544 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.262 1.262 14 N -0.688 5.688 15 C 0.051 3.949 16 C 0.070 3.930 17 F -0.215 7.215 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.150 4.150 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.054 0.946 26 H -0.007 1.007 27 H -0.017 1.017 28 H 0.263 0.737 29 H 0.336 0.664 30 H 0.023 0.977 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 2.797 -13.216 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.025 4.025 3 H 0.047 0.953 4 C -0.141 4.141 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.078 0.922 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.186 1.186 14 N -0.321 5.321 15 C -0.079 4.079 16 C 0.051 3.949 17 F -0.196 7.196 18 C -0.176 4.176 19 C -0.171 4.171 20 C -0.187 4.187 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.001 0.999 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.041 0.959 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.080 2.564 -13.390 18.215 hybrid contribution 1.945 0.040 1.142 2.255 sum -10.136 2.603 -12.248 16.110 Atomic orbital electron populations 1.21699 0.92499 1.02266 1.01876 1.21598 0.96867 0.94870 0.89144 0.95305 1.21656 0.95959 0.99881 0.96554 1.19006 0.92385 0.94375 0.95337 1.21692 0.92636 1.34561 1.09255 0.92188 1.26006 0.97337 0.96316 1.00214 1.70109 1.02756 1.45359 1.39186 0.85430 0.77848 0.78515 0.79164 1.19829 1.20682 1.18568 1.60675 1.33850 1.32590 1.04937 1.22527 1.01913 0.93460 0.90016 1.22387 0.85541 0.91836 0.95090 1.92789 1.57629 1.74255 1.94927 1.23484 0.98132 1.01323 0.94617 1.22835 0.99876 0.97299 0.97053 1.23603 1.03078 0.98918 0.93150 0.91600 0.92363 0.91783 0.92090 0.92759 0.98927 0.99859 0.92831 0.84418 0.95873 0.86918 0.91480 0.86439 0.88096 0.90721 0.86029 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.42 71.98 0.68 -2.67 16 2 C 0.08 2.96 2.65 44.91 0.12 3.08 16 3 H 0.03 1.06 7.80 -2.38 -0.02 1.04 16 4 C -0.10 -4.38 4.74 30.59 0.15 -4.24 16 5 C 0.03 1.43 4.80 29.85 0.14 1.57 16 6 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 7 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 9 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 10 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 14 N -0.69 -24.27 6.28 -491.56 -3.09 -27.36 16 15 C 0.05 1.44 5.26 86.30 0.45 1.90 16 16 C 0.07 1.89 1.85 -10.27 -0.02 1.87 16 17 F -0.22 -7.87 16.42 44.97 0.74 -7.13 16 18 C -0.14 -2.85 7.53 31.12 0.23 -2.62 16 19 C -0.13 -2.31 8.06 31.12 0.25 -2.06 16 20 C -0.15 -2.95 7.54 31.12 0.23 -2.72 16 21 H 0.07 1.47 7.45 -2.39 -0.02 1.45 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 26 H -0.01 -0.44 6.43 -2.39 -0.02 -0.46 16 27 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 28 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.34 14.40 5.78 -89.70 -0.52 13.88 16 30 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 31 H 0.11 2.50 7.14 -2.38 -0.02 2.48 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.89 7.89 -2.39 -0.02 1.87 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.12 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.63 301.23 3.41 -64.23 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.51 Total: 18.34 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 2.93 Total: -37.25 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.80 Total: -85.71 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.74 Total: -7.13 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.63 3.41 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.476 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds