Wall clock time and date at job start Sun Mar 29 2020 21:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47144 * 2 1 4 4 C 1.52996 * 109.46824 * 239.99856 * 2 1 3 5 5 C 1.52998 * 109.46929 * 175.00282 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 N 1.46898 * 109.47040 * 120.00029 * 2 1 3 15 15 C 1.46899 * 110.99887 * 274.99909 * 14 2 1 16 16 C 1.53007 * 109.47108 * 179.97438 * 15 14 2 17 17 F 1.39901 * 112.84967 * 48.80575 * 16 15 14 18 18 C 1.53774 * 113.61645 * 277.49477 * 16 15 14 19 19 C 1.53774 * 87.08517 * 220.01865 * 18 16 15 20 20 C 1.53775 * 113.61403 * 179.97438 * 16 15 14 21 21 H 1.08998 * 109.46949 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46582 * 300.00255 * 1 2 3 23 23 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 24 24 H 1.09000 * 109.47441 * 55.00371 * 4 2 1 25 25 H 1.09002 * 109.47087 * 294.99817 * 4 2 1 26 26 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 27 27 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 28 28 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 29 29 H 1.00906 * 111.00294 * 38.95104 * 14 2 1 30 30 H 1.09001 * 109.47164 * 299.99919 * 15 14 2 31 31 H 1.08999 * 109.47074 * 60.00354 * 15 14 2 32 32 H 1.08999 * 113.61517 * 334.57288 * 18 16 15 33 33 H 1.09007 * 113.61538 * 105.46630 * 18 16 15 34 34 H 1.08996 * 113.61748 * 270.88924 * 19 18 16 35 35 H 1.09003 * 113.61791 * 139.97808 * 19 18 16 36 36 H 1.09000 * 113.61888 * 254.53190 * 20 16 15 37 37 H 1.09004 * 113.61752 * 25.43424 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0672 -1.3244 -2.5438 7 1 3.3687 -1.8054 -3.2125 8 6 5.4180 -1.3563 -2.8183 9 7 5.8564 -1.9763 -3.8921 10 14 6.6253 -0.5176 -1.6657 11 1 7.0667 -1.4807 -0.6251 12 1 7.8038 -0.0494 -2.4386 13 1 5.9653 0.6439 -1.0173 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3468 16 6 2.5951 -0.5332 3.5745 17 9 3.7504 -1.2769 3.3114 18 6 1.5026 -1.3279 4.3092 19 6 2.1610 -0.8689 5.6209 20 6 2.6990 0.3397 4.8362 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2618 -2.1370 25 1 1.7516 -1.7715 -1.2055 26 1 3.9995 -1.0729 -0.4260 27 1 3.8533 0.4368 -1.3573 28 1 6.8066 -1.9985 -4.0853 29 1 1.4496 -1.4979 1.4101 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6163 2.5525 32 1 0.4989 -0.9294 4.1616 33 1 1.5602 -2.4040 4.1448 34 1 2.9419 -1.5412 5.9761 35 1 1.4453 -0.6015 6.3984 36 1 3.7222 0.6097 5.0974 37 1 2.0225 1.1944 4.8329 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:52 Heat of formation + Delta-G solvation = -46.266249 kcal Electronic energy + Delta-G solvation = -16407.108559 eV Core-core repulsion = 13712.761314 eV Total energy + Delta-G solvation = -2694.347245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.43208 -38.43699 -36.89982 -33.19393 -31.58978 -29.53306 -26.76970 -26.00449 -25.14208 -22.44512 -21.02096 -19.94780 -19.50766 -16.59436 -16.24469 -15.96254 -15.39516 -14.91787 -14.48919 -14.12180 -13.90415 -13.38117 -12.97514 -12.85917 -12.57060 -12.48918 -12.31584 -12.08180 -11.68741 -11.41935 -11.36176 -11.20699 -10.84889 -10.52094 -10.27582 -10.04889 -9.77168 -9.56807 -9.42240 -8.95845 -8.37266 -8.02726 -5.89224 -3.84928 3.45932 3.51533 3.58608 3.99986 4.11624 4.34526 4.50354 4.61695 4.63496 4.69901 5.22444 5.29827 5.36699 5.42184 5.46947 5.48224 5.50900 5.59376 5.62721 5.66682 5.79708 5.87827 6.00898 6.19456 6.27483 6.31386 6.55809 6.75464 7.14487 7.31970 7.58800 7.67523 7.80046 8.00054 8.71130 9.16879 9.75528 11.24678 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.006986 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.905033 B = 4006.842967 C = 4741.313655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.072 0.928 4 C -0.089 4.089 5 C -0.008 4.008 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.911 5.911 10 Si 0.882 3.118 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.266 1.266 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.099 3.901 17 F -0.177 7.177 18 C -0.160 4.160 19 C -0.139 4.139 20 C -0.157 4.157 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.006 0.994 28 H 0.260 0.740 29 H 0.338 0.662 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 5.265 18.338 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.045 4.045 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.191 1.191 14 N -0.300 5.300 15 C -0.080 4.080 16 C 0.080 3.920 17 F -0.157 7.157 18 C -0.198 4.198 19 C -0.177 4.177 20 C -0.196 4.196 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.144 5.288 18.059 21.377 hybrid contribution -0.125 0.422 0.675 0.806 sum -10.269 5.710 18.734 22.114 Atomic orbital electron populations 1.22523 0.98263 1.01755 1.01363 1.21795 0.91281 0.98293 0.91477 0.90983 1.21446 0.99045 0.99034 0.93219 1.19483 0.91467 0.96140 0.97412 1.21260 0.92838 1.33778 1.07475 0.91433 1.25014 0.98445 0.95085 0.95069 1.69932 1.14397 1.44168 1.26566 0.86739 0.80495 0.80742 0.81045 1.20280 1.21850 1.19073 1.60439 1.57989 1.08870 1.02678 1.22385 0.99506 0.96033 0.90094 1.21815 0.83841 0.92140 0.94186 1.92895 1.50084 1.77653 1.95116 1.23586 0.98419 1.01704 0.96081 1.22830 1.00474 0.97713 0.96653 1.23559 1.03110 0.97853 0.95036 0.92581 0.93766 0.92007 0.92844 0.92852 0.95306 0.97575 0.93012 0.84376 0.90126 0.93966 0.88813 0.90067 0.89676 0.90865 0.90165 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.16 37.16 0.34 -1.93 16 2 C 0.08 1.30 2.59 -67.71 -0.18 1.12 16 3 H 0.07 1.18 7.80 -51.93 -0.40 0.77 16 4 C -0.09 -1.82 4.83 -26.73 -0.13 -1.95 16 5 C -0.01 -0.19 3.93 -27.88 -0.11 -0.30 16 6 C -0.52 -15.48 9.66 -34.44 -0.33 -15.81 16 7 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 8 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.91 -29.38 13.96 55.43 0.77 -28.61 16 10 Si 0.88 23.36 27.47 -169.99 -4.67 18.69 16 11 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.27 -6.83 6.53 56.52 0.37 -6.46 16 14 N -0.67 -10.47 5.54 -106.73 -0.59 -11.06 16 15 C 0.05 0.64 5.18 -3.82 -0.02 0.62 16 16 C 0.10 1.22 1.74 -89.81 -0.16 1.07 16 17 F -0.18 -2.97 17.07 2.25 0.04 -2.93 16 18 C -0.16 -1.54 7.53 -25.93 -0.20 -1.74 16 19 C -0.14 -1.21 8.06 -25.90 -0.21 -1.42 16 20 C -0.16 -1.50 7.54 -25.90 -0.20 -1.69 16 21 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 22 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 27 H 0.01 0.15 7.18 -51.93 -0.37 -0.22 16 28 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.34 4.83 8.47 -39.29 -0.33 4.49 16 30 H 0.08 1.11 8.06 -51.93 -0.42 0.70 16 31 H 0.04 0.45 7.24 -51.93 -0.38 0.07 16 32 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 301.34 15.07 4.54 4.54 Total: -1.00 -33.09 301.34 -7.65 -40.74 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.47 Total: -1.21 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.28 Total: -20.17 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.18 Total: -39.66 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.67 Total: 18.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.09 -7.65 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.526 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds