Wall clock time and date at job start Sun Mar 29 2020 21:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47144 * 2 1 4 4 C 1.52996 * 109.46824 * 239.99856 * 2 1 3 5 5 C 1.52998 * 109.46929 * 175.00282 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 N 1.46898 * 109.47040 * 120.00029 * 2 1 3 15 15 C 1.46899 * 110.99887 * 274.99909 * 14 2 1 16 16 C 1.53007 * 109.47108 * 179.97438 * 15 14 2 17 17 F 1.39901 * 112.84967 * 48.80575 * 16 15 14 18 18 C 1.53774 * 113.61645 * 277.49477 * 16 15 14 19 19 C 1.53774 * 87.08517 * 220.01865 * 18 16 15 20 20 C 1.53775 * 113.61403 * 179.97438 * 16 15 14 21 21 H 1.08998 * 109.46949 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46582 * 300.00255 * 1 2 3 23 23 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 24 24 H 1.09000 * 109.47441 * 55.00371 * 4 2 1 25 25 H 1.09002 * 109.47087 * 294.99817 * 4 2 1 26 26 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 27 27 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 28 28 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 29 29 H 1.00906 * 111.00294 * 38.95104 * 14 2 1 30 30 H 1.09001 * 109.47164 * 299.99919 * 15 14 2 31 31 H 1.08999 * 109.47074 * 60.00354 * 15 14 2 32 32 H 1.08999 * 113.61517 * 334.57288 * 18 16 15 33 33 H 1.09007 * 113.61538 * 105.46630 * 18 16 15 34 34 H 1.08996 * 113.61748 * 270.88924 * 19 18 16 35 35 H 1.09003 * 113.61791 * 139.97808 * 19 18 16 36 36 H 1.09000 * 113.61888 * 254.53190 * 20 16 15 37 37 H 1.09004 * 113.61752 * 25.43424 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0672 -1.3244 -2.5438 7 1 3.3687 -1.8054 -3.2125 8 6 5.4180 -1.3563 -2.8183 9 7 5.8564 -1.9763 -3.8921 10 14 6.6253 -0.5176 -1.6657 11 1 7.0667 -1.4807 -0.6251 12 1 7.8038 -0.0494 -2.4386 13 1 5.9653 0.6439 -1.0173 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3468 16 6 2.5951 -0.5332 3.5745 17 9 3.7504 -1.2769 3.3114 18 6 1.5026 -1.3279 4.3092 19 6 2.1610 -0.8689 5.6209 20 6 2.6990 0.3397 4.8362 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2618 -2.1370 25 1 1.7516 -1.7715 -1.2055 26 1 3.9995 -1.0729 -0.4260 27 1 3.8533 0.4368 -1.3573 28 1 6.8066 -1.9985 -4.0853 29 1 1.4496 -1.4979 1.4101 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6163 2.5525 32 1 0.4989 -0.9294 4.1616 33 1 1.5602 -2.4040 4.1448 34 1 2.9419 -1.5412 5.9761 35 1 1.4453 -0.6015 6.3984 36 1 3.7222 0.6097 5.0974 37 1 2.0225 1.1944 4.8329 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:52 Heat of formation + Delta-G solvation = -67.705581 kcal Electronic energy + Delta-G solvation = -16408.038239 eV Core-core repulsion = 13712.761314 eV Total energy + Delta-G solvation = -2695.276925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.51965 -39.35113 -38.07154 -35.25123 -33.30053 -31.08783 -27.72295 -27.05596 -26.68918 -23.41202 -22.71495 -21.46197 -20.41410 -18.84655 -17.25657 -16.91516 -16.52655 -16.34045 -15.82924 -15.63024 -15.02093 -14.81619 -14.43813 -14.24095 -13.93693 -13.72468 -13.48296 -13.26120 -13.07250 -12.90596 -12.76661 -12.22807 -11.96472 -11.87800 -11.80085 -11.51288 -11.35749 -11.24756 -11.07973 -10.85350 -10.73185 -9.16998 -8.28319 -6.29638 1.33683 1.36185 1.48525 2.37070 3.06739 3.08388 3.33488 3.48463 3.70913 3.81188 3.86562 4.02378 4.28133 4.42632 4.50132 4.64529 4.72797 4.73943 4.76461 4.81224 4.90701 4.98359 4.99509 5.01407 5.04566 5.18142 5.25252 5.37355 5.50360 5.59473 5.69043 5.76218 6.21030 6.33211 6.58392 6.78847 7.34779 8.88907 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.006986 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.905033 B = 4006.842967 C = 4741.313655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 H 0.070 0.930 4 C -0.086 4.086 5 C 0.001 3.999 6 C -0.529 4.529 7 H 0.031 0.969 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.951 3.049 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.252 1.252 14 N -0.696 5.696 15 C 0.053 3.947 16 C 0.073 3.927 17 F -0.210 7.210 18 C -0.152 4.152 19 C -0.134 4.134 20 C -0.149 4.149 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.020 0.980 27 H 0.005 0.995 28 H 0.265 0.735 29 H 0.344 0.656 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 6.838 20.779 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.124 4.124 5 C -0.037 4.037 6 C -0.567 4.567 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.775 3.225 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.176 1.176 14 N -0.327 5.327 15 C -0.076 4.076 16 C 0.054 3.946 17 F -0.191 7.191 18 C -0.189 4.189 19 C -0.172 4.172 20 C -0.187 4.187 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.424 6.864 20.510 24.460 hybrid contribution 0.240 -0.126 -0.156 0.313 sum -11.184 6.739 20.354 24.182 Atomic orbital electron populations 1.22386 0.95130 1.02484 1.02805 1.21550 0.93655 0.97153 0.89583 0.91129 1.21351 0.95685 0.99291 0.96046 1.19362 0.94884 0.94944 0.94463 1.21657 0.92626 1.33773 1.08606 0.95110 1.25952 1.00600 0.95857 0.96762 1.70069 1.15164 1.45771 1.28553 0.85651 0.78101 0.79972 0.78789 1.19935 1.20653 1.17602 1.60303 1.58823 1.09967 1.03620 1.22420 1.00898 0.95121 0.89176 1.22319 0.83679 0.93457 0.95141 1.92821 1.52174 1.78660 1.95425 1.23602 0.98702 1.00861 0.95747 1.22812 1.00538 0.96932 0.96874 1.23590 1.03429 0.98585 0.93098 0.92245 0.91123 0.91732 0.93061 0.93809 0.96190 0.97637 0.92630 0.83697 0.91514 0.90684 0.86393 0.91132 0.90794 0.88394 0.90992 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.16 71.98 0.66 -3.08 16 2 C 0.09 2.72 2.59 44.92 0.12 2.84 16 3 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 4 C -0.09 -3.48 4.83 30.59 0.15 -3.33 16 5 C 0.00 0.05 3.93 29.85 0.12 0.16 16 6 C -0.53 -32.61 9.66 25.60 0.25 -32.36 16 7 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 8 C 0.00 0.27 5.47 84.65 0.46 0.73 16 9 N -0.95 -62.94 13.96 21.45 0.30 -62.64 16 10 Si 0.95 48.52 27.47 68.60 1.88 50.41 16 11 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.25 -12.20 6.53 99.48 0.65 -11.55 16 14 N -0.70 -20.62 5.54 -491.57 -2.72 -23.34 16 15 C 0.05 1.24 5.18 86.31 0.45 1.68 16 16 C 0.07 1.66 1.74 -10.27 -0.02 1.64 16 17 F -0.21 -7.00 17.07 44.97 0.77 -6.23 16 18 C -0.15 -2.51 7.53 31.12 0.23 -2.27 16 19 C -0.13 -1.95 8.06 31.13 0.25 -1.70 16 20 C -0.15 -2.43 7.54 31.13 0.23 -2.19 16 21 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 22 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 27 H 0.01 0.27 7.18 -2.39 -0.02 0.25 16 28 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 29 H 0.34 9.25 8.47 -89.69 -0.76 8.49 16 30 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 31 H 0.08 1.25 7.24 -2.39 -0.02 1.23 16 32 H 0.12 1.37 7.96 -2.39 -0.02 1.35 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.35 8.10 -2.38 -0.02 1.33 16 Total: -1.00 -73.19 301.34 3.34 -69.85 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.21 Total: 9.83 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.90 Total: -37.88 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.43 Total: -85.98 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.77 Total: -6.23 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.88 Total: 50.41 kcal Total: -73.19 3.34 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.148 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds