Wall clock time and date at job start Sun Mar 29 2020 21:39:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47129 * 2 1
4 4 C 1.53006 * 109.46818 * 119.99334 * 2 1 3
5 5 C 1.53001 * 109.47064 * 297.29205 * 4 2 1
6 6 C 1.50699 * 109.46964 * 184.56525 * 5 4 2
7 7 H 1.08000 * 120.00032 * 0.02562 * 6 5 4
8 8 C 1.37874 * 120.00024 * 179.97438 * 6 5 4
9 9 N 1.31516 * 120.00176 * 0.02562 * 8 6 5
10 10 Si 1.86802 * 120.00037 * 180.02562 * 8 6 5
11 11 H 1.48498 * 109.47003 * 90.00254 * 10 8 6
12 12 H 1.48503 * 109.46967 * 210.00182 * 10 8 6
13 13 H 1.48493 * 109.47273 * 330.00026 * 10 8 6
14 14 N 1.46894 * 109.47189 * 239.99434 * 2 1 3
15 15 C 1.46839 * 111.00260 * 62.28628 * 14 2 1
16 16 C 1.53046 * 109.52561 * 185.84043 * 15 14 2
17 17 C 1.53114 * 109.27419 * 300.81822 * 16 15 14
18 18 F 1.39903 * 109.52060 * 177.55900 * 17 16 15
19 19 C 1.53121 * 109.16011 * 57.65758 * 17 16 15
20 20 C 1.46847 * 110.99931 * 186.49948 * 14 2 1
21 21 H 1.08993 * 109.47710 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47266 * 300.00961 * 1 2 3
23 23 H 1.09007 * 109.46983 * 60.00227 * 1 2 3
24 24 H 1.09000 * 109.47009 * 57.29095 * 4 2 1
25 25 H 1.08994 * 109.46862 * 177.29204 * 4 2 1
26 26 H 1.08997 * 109.47367 * 304.57128 * 5 4 2
27 27 H 1.09001 * 109.46999 * 64.57143 * 5 4 2
28 28 H 0.96993 * 120.00373 * 179.97438 * 9 8 6
29 29 H 1.08993 * 109.46589 * 65.82429 * 15 14 2
30 30 H 1.09008 * 109.45230 * 305.84946 * 15 14 2
31 31 H 1.08999 * 109.50233 * 180.87647 * 16 15 14
32 32 H 1.08996 * 109.50131 * 60.75888 * 16 15 14
33 33 H 1.08992 * 109.52503 * 297.74638 * 17 16 15
34 34 H 1.08994 * 109.50644 * 62.28367 * 19 17 16
35 35 H 1.09004 * 109.49953 * 182.40328 * 19 17 16
36 36 H 1.09003 * 109.46097 * 294.17151 * 20 14 2
37 37 H 1.09002 * 109.46886 * 54.14055 * 20 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7211 1.2494
5 6 1.5863 0.0385 2.4976
6 6 2.1812 -0.6070 3.7224
7 1 2.8194 -1.4724 3.6208
8 6 1.9117 -0.0924 4.9728
9 7 1.1349 0.9616 5.0967
10 14 2.6498 -0.8922 6.4910
11 1 3.9635 -0.2679 6.7903
12 1 1.7358 -0.6999 7.6456
13 1 2.8365 -2.3445 6.2442
14 7 2.0196 -0.6926 -1.1993
15 6 1.5940 0.0039 -2.4199
16 6 1.9953 -0.8202 -3.6455
17 6 3.5142 -1.0137 -3.6492
18 9 3.8809 -1.8134 -4.7370
19 6 3.9368 -1.6976 -2.3460
20 6 3.4793 -0.8480 -1.1581
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3634 0.5140 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 1.6374 -1.7338 1.2741
25 1 3.1288 -0.7634 1.2255
26 1 1.9203 1.0741 2.4341
27 1 0.4987 0.0110 2.5644
28 1 0.9450 1.3235 5.9763
29 1 2.0741 0.9813 -2.4665
30 1 0.5115 0.1313 -2.4065
31 1 1.6931 -0.2954 -4.5518
32 1 1.5046 -1.7927 -3.6066
33 1 4.0048 -0.0436 -3.7273
34 1 3.4767 -2.6838 -2.2867
35 1 5.0219 -1.7996 -2.3239
36 1 3.9506 0.1334 -1.2107
37 1 3.7663 -1.3392 -0.2284
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172492216.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:36
Heat of formation + Delta-G solvation = -71.800735 kcal
Electronic energy + Delta-G solvation = -16401.568585 eV
Core-core repulsion = 13706.114081 eV
Total energy + Delta-G solvation = -2695.454504 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-47.67367 -39.04743 -35.15197 -32.90131 -31.19217 -30.62702 -28.36910 -25.44164
-23.83669 -22.98280 -21.47414 -20.11299 -19.21680 -16.77293 -16.19312 -15.98008
-15.07844 -14.84783 -14.69665 -14.40934 -14.19654 -13.87258 -12.76596 -12.63260
-12.55530 -12.23871 -12.20972 -11.68632 -11.29938 -11.28445 -11.09214 -11.04755
-10.80973 -10.63167 -10.51050 -10.39311 -9.96519 -9.58137 -9.30609 -9.00966
-8.33405 -8.08714 -5.99700 -4.01625 3.31960 3.38367 3.41944 4.02055
4.45108 4.47503 4.51171 4.59825 4.86261 5.08592 5.27851 5.36232
5.42967 5.48757 5.52486 5.59679 5.71013 5.78322 5.92493 5.94539
5.99343 6.06730 6.20869 6.31748 6.39467 6.62654 6.72138 6.76044
7.10586 7.35818 7.41904 7.68669 7.84146 8.00636 8.44146 9.05550
9.62399 11.11666
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.047530 B = 0.005114 C = 0.004724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 588.964649 B = 5473.806324 C = 5925.320438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.082 3.918
3 H 0.036 0.964
4 C -0.105 4.105
5 C 0.023 3.977
6 C -0.519 4.519
7 H 0.054 0.946
8 C 0.057 3.943
9 N -0.896 5.896
10 Si 0.891 3.109
11 H -0.281 1.281
12 H -0.287 1.287
13 H -0.274 1.274
14 N -0.536 5.536
15 C 0.053 3.947
16 C -0.140 4.140
17 C 0.089 3.911
18 F -0.218 7.218
19 C -0.140 4.140
20 C 0.051 3.949
21 H 0.059 0.941
22 H 0.071 0.929
23 H 0.042 0.958
24 H 0.056 0.944
25 H 0.050 0.950
26 H 0.012 0.988
27 H 0.020 0.980
28 H 0.260 0.740
29 H 0.032 0.968
30 H 0.085 0.915
31 H 0.073 0.927
32 H 0.082 0.918
33 H 0.077 0.923
34 H 0.082 0.918
35 H 0.075 0.925
36 H 0.033 0.967
37 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.283 -1.858 -15.789 16.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.025 4.025
3 H 0.054 0.946
4 C -0.143 4.143
5 C -0.015 4.015
6 C -0.557 4.557
7 H 0.072 0.928
8 C -0.144 4.144
9 N -0.536 5.536
10 Si 0.718 3.282
11 H -0.207 1.207
12 H -0.212 1.212
13 H -0.199 1.199
14 N -0.261 5.261
15 C -0.075 4.075
16 C -0.178 4.178
17 C 0.052 3.948
18 F -0.199 7.199
19 C -0.178 4.178
20 C -0.077 4.077
21 H 0.078 0.922
22 H 0.089 0.911
23 H 0.061 0.939
24 H 0.074 0.926
25 H 0.068 0.932
26 H 0.031 0.969
27 H 0.039 0.961
28 H 0.070 0.930
29 H 0.050 0.950
30 H 0.103 0.897
31 H 0.092 0.908
32 H 0.101 0.899
33 H 0.095 0.905
34 H 0.101 0.899
35 H 0.093 0.907
36 H 0.051 0.949
37 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 2.002 -2.226 -15.689 15.972
hybrid contribution 0.781 0.457 0.846 1.238
sum 2.782 -1.769 -14.843 15.205
Atomic orbital electron populations
1.21884 0.94563 1.02212 1.01244 1.21783 0.95685 0.95504 0.89571
0.94613 1.21799 0.99419 0.99612 0.93484 1.19129 0.96834 0.95073
0.90456 1.21259 1.29614 1.13486 0.91380 0.92765 1.25010 0.95264
0.95048 0.99086 1.69959 1.37163 1.22962 1.23496 0.86617 0.78976
0.79827 0.82731 1.20729 1.21236 1.19866 1.62032 1.10915 1.51185
1.02001 1.22057 1.01467 0.94615 0.89359 1.22171 0.94510 1.02628
0.98475 1.21681 0.96296 0.93216 0.83580 1.92792 1.93121 1.76580
1.57429 1.22191 1.01451 1.00954 0.93243 1.22118 0.88107 0.98507
0.98922 0.92187 0.91050 0.93900 0.92562 0.93154 0.96941 0.96128
0.93048 0.95028 0.89682 0.90825 0.89930 0.90475 0.89911 0.90660
0.94909 0.88669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.27 8.74 37.16 0.32 -1.95 16
2 C 0.08 1.39 2.17 -67.71 -0.15 1.24 16
3 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
4 C -0.11 -2.14 4.31 -26.73 -0.12 -2.26 16
5 C 0.02 0.57 4.56 -27.88 -0.13 0.44 16
6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16
7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16
8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
9 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16
10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
14 N -0.54 -7.80 4.52 -226.69 -1.03 -8.83 16
15 C 0.05 0.65 5.26 -3.83 -0.02 0.63 16
16 C -0.14 -1.51 5.83 -26.65 -0.16 -1.66 16
17 C 0.09 0.99 3.95 -26.61 -0.11 0.89 16
18 F -0.22 -2.79 17.09 2.25 0.04 -2.75 16
19 C -0.14 -1.63 5.83 -26.65 -0.16 -1.79 16
20 C 0.05 0.70 5.08 -3.83 -0.02 0.68 16
21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
22 H 0.07 1.27 6.60 -51.93 -0.34 0.92 16
23 H 0.04 0.58 6.33 -51.93 -0.33 0.25 16
24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
25 H 0.05 1.00 6.04 -51.93 -0.31 0.69 16
26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
27 H 0.02 0.55 6.74 -51.93 -0.35 0.20 16
28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16
30 H 0.08 1.00 6.08 -51.92 -0.32 0.68 16
31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16
37 H 0.10 1.40 5.80 -51.93 -0.30 1.10 16
LS Contribution 289.25 15.07 4.36 4.36
Total: -1.00 -29.44 289.25 -7.99 -37.43
By element:
Atomic # 1 Polarization: 2.60 SS G_CDS: -6.14 Total: -3.54 kcal
Atomic # 6 Polarization: -16.26 SS G_CDS: -0.93 Total: -17.19 kcal
Atomic # 7 Polarization: -34.62 SS G_CDS: -0.29 Total: -34.91 kcal
Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -29.44 -7.99 -37.43 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172492216.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.374 kcal
(2) G-P(sol) polarization free energy of solvation -29.439 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds