Wall clock time and date at job start Sun Mar 29 2020 21:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.53006 * 109.46818 * 119.99334 * 2 1 3 5 5 C 1.53001 * 109.47064 * 297.29205 * 4 2 1 6 6 C 1.50699 * 109.46964 * 184.56525 * 5 4 2 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47003 * 90.00254 * 10 8 6 12 12 H 1.48503 * 109.46967 * 210.00182 * 10 8 6 13 13 H 1.48493 * 109.47273 * 330.00026 * 10 8 6 14 14 N 1.46894 * 109.47189 * 239.99434 * 2 1 3 15 15 C 1.46839 * 111.00260 * 62.28628 * 14 2 1 16 16 C 1.53046 * 109.52561 * 185.84043 * 15 14 2 17 17 C 1.53114 * 109.27419 * 300.81822 * 16 15 14 18 18 F 1.39903 * 109.52060 * 177.55900 * 17 16 15 19 19 C 1.53121 * 109.16011 * 57.65758 * 17 16 15 20 20 C 1.46847 * 110.99931 * 186.49948 * 14 2 1 21 21 H 1.08993 * 109.47710 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47266 * 300.00961 * 1 2 3 23 23 H 1.09007 * 109.46983 * 60.00227 * 1 2 3 24 24 H 1.09000 * 109.47009 * 57.29095 * 4 2 1 25 25 H 1.08994 * 109.46862 * 177.29204 * 4 2 1 26 26 H 1.08997 * 109.47367 * 304.57128 * 5 4 2 27 27 H 1.09001 * 109.46999 * 64.57143 * 5 4 2 28 28 H 0.96993 * 120.00373 * 179.97438 * 9 8 6 29 29 H 1.08993 * 109.46589 * 65.82429 * 15 14 2 30 30 H 1.09008 * 109.45230 * 305.84946 * 15 14 2 31 31 H 1.08999 * 109.50233 * 180.87647 * 16 15 14 32 32 H 1.08996 * 109.50131 * 60.75888 * 16 15 14 33 33 H 1.08992 * 109.52503 * 297.74638 * 17 16 15 34 34 H 1.08994 * 109.50644 * 62.28367 * 19 17 16 35 35 H 1.09004 * 109.49953 * 182.40328 * 19 17 16 36 36 H 1.09003 * 109.46097 * 294.17151 * 20 14 2 37 37 H 1.09002 * 109.46886 * 54.14055 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5863 0.0385 2.4976 6 6 2.1812 -0.6070 3.7224 7 1 2.8194 -1.4724 3.6208 8 6 1.9117 -0.0924 4.9728 9 7 1.1349 0.9616 5.0967 10 14 2.6498 -0.8922 6.4910 11 1 3.9635 -0.2679 6.7903 12 1 1.7358 -0.6999 7.6456 13 1 2.8365 -2.3445 6.2442 14 7 2.0196 -0.6926 -1.1993 15 6 1.5940 0.0039 -2.4199 16 6 1.9953 -0.8202 -3.6455 17 6 3.5142 -1.0137 -3.6492 18 9 3.8809 -1.8134 -4.7370 19 6 3.9368 -1.6976 -2.3460 20 6 3.4793 -0.8480 -1.1581 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6374 -1.7338 1.2741 25 1 3.1288 -0.7634 1.2255 26 1 1.9203 1.0741 2.4341 27 1 0.4987 0.0110 2.5644 28 1 0.9450 1.3235 5.9763 29 1 2.0741 0.9813 -2.4665 30 1 0.5115 0.1313 -2.4065 31 1 1.6931 -0.2954 -4.5518 32 1 1.5046 -1.7927 -3.6066 33 1 4.0048 -0.0436 -3.7273 34 1 3.4767 -2.6838 -2.2867 35 1 5.0219 -1.7996 -2.3239 36 1 3.9506 0.1334 -1.2107 37 1 3.7663 -1.3392 -0.2284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:36 Heat of formation + Delta-G solvation = -71.800735 kcal Electronic energy + Delta-G solvation = -16401.568585 eV Core-core repulsion = 13706.114081 eV Total energy + Delta-G solvation = -2695.454504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.67367 -39.04743 -35.15197 -32.90131 -31.19217 -30.62702 -28.36910 -25.44164 -23.83669 -22.98280 -21.47414 -20.11299 -19.21680 -16.77293 -16.19312 -15.98008 -15.07844 -14.84783 -14.69665 -14.40934 -14.19654 -13.87258 -12.76596 -12.63260 -12.55530 -12.23871 -12.20972 -11.68632 -11.29938 -11.28445 -11.09214 -11.04755 -10.80973 -10.63167 -10.51050 -10.39311 -9.96519 -9.58137 -9.30609 -9.00966 -8.33405 -8.08714 -5.99700 -4.01625 3.31960 3.38367 3.41944 4.02055 4.45108 4.47503 4.51171 4.59825 4.86261 5.08592 5.27851 5.36232 5.42967 5.48757 5.52486 5.59679 5.71013 5.78322 5.92493 5.94539 5.99343 6.06730 6.20869 6.31748 6.39467 6.62654 6.72138 6.76044 7.10586 7.35818 7.41904 7.68669 7.84146 8.00636 8.44146 9.05550 9.62399 11.11666 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.047530 B = 0.005114 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.964649 B = 5473.806324 C = 5925.320438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.105 4.105 5 C 0.023 3.977 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.536 5.536 15 C 0.053 3.947 16 C -0.140 4.140 17 C 0.089 3.911 18 F -0.218 7.218 19 C -0.140 4.140 20 C 0.051 3.949 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.012 0.988 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -1.858 -15.789 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.261 5.261 15 C -0.075 4.075 16 C -0.178 4.178 17 C 0.052 3.948 18 F -0.199 7.199 19 C -0.178 4.178 20 C -0.077 4.077 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.002 -2.226 -15.689 15.972 hybrid contribution 0.781 0.457 0.846 1.238 sum 2.782 -1.769 -14.843 15.205 Atomic orbital electron populations 1.21884 0.94563 1.02212 1.01244 1.21783 0.95685 0.95504 0.89571 0.94613 1.21799 0.99419 0.99612 0.93484 1.19129 0.96834 0.95073 0.90456 1.21259 1.29614 1.13486 0.91380 0.92765 1.25010 0.95264 0.95048 0.99086 1.69959 1.37163 1.22962 1.23496 0.86617 0.78976 0.79827 0.82731 1.20729 1.21236 1.19866 1.62032 1.10915 1.51185 1.02001 1.22057 1.01467 0.94615 0.89359 1.22171 0.94510 1.02628 0.98475 1.21681 0.96296 0.93216 0.83580 1.92792 1.93121 1.76580 1.57429 1.22191 1.01451 1.00954 0.93243 1.22118 0.88107 0.98507 0.98922 0.92187 0.91050 0.93900 0.92562 0.93154 0.96941 0.96128 0.93048 0.95028 0.89682 0.90825 0.89930 0.90475 0.89911 0.90660 0.94909 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.74 37.16 0.32 -1.95 16 2 C 0.08 1.39 2.17 -67.71 -0.15 1.24 16 3 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -2.14 4.31 -26.73 -0.12 -2.26 16 5 C 0.02 0.57 4.56 -27.88 -0.13 0.44 16 6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 N -0.54 -7.80 4.52 -226.69 -1.03 -8.83 16 15 C 0.05 0.65 5.26 -3.83 -0.02 0.63 16 16 C -0.14 -1.51 5.83 -26.65 -0.16 -1.66 16 17 C 0.09 0.99 3.95 -26.61 -0.11 0.89 16 18 F -0.22 -2.79 17.09 2.25 0.04 -2.75 16 19 C -0.14 -1.63 5.83 -26.65 -0.16 -1.79 16 20 C 0.05 0.70 5.08 -3.83 -0.02 0.68 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.07 1.27 6.60 -51.93 -0.34 0.92 16 23 H 0.04 0.58 6.33 -51.93 -0.33 0.25 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.05 1.00 6.04 -51.93 -0.31 0.69 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.55 6.74 -51.93 -0.35 0.20 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 1.00 6.08 -51.92 -0.32 0.68 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.10 1.40 5.80 -51.93 -0.30 1.10 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -29.44 289.25 -7.99 -37.43 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.14 Total: -3.54 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.93 Total: -17.19 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.29 Total: -34.91 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.44 -7.99 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.374 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds