Wall clock time and date at job start Sun Mar 29 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47129 * 2 1 4 4 C 1.53006 * 109.46818 * 119.99334 * 2 1 3 5 5 C 1.53001 * 109.47064 * 297.29205 * 4 2 1 6 6 C 1.50699 * 109.46964 * 184.56525 * 5 4 2 7 7 H 1.08000 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00024 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47003 * 90.00254 * 10 8 6 12 12 H 1.48503 * 109.46967 * 210.00182 * 10 8 6 13 13 H 1.48493 * 109.47273 * 330.00026 * 10 8 6 14 14 N 1.46894 * 109.47189 * 239.99434 * 2 1 3 15 15 C 1.46839 * 111.00260 * 62.28628 * 14 2 1 16 16 C 1.53046 * 109.52561 * 185.84043 * 15 14 2 17 17 C 1.53114 * 109.27419 * 300.81822 * 16 15 14 18 18 F 1.39903 * 109.52060 * 177.55900 * 17 16 15 19 19 C 1.53121 * 109.16011 * 57.65758 * 17 16 15 20 20 C 1.46847 * 110.99931 * 186.49948 * 14 2 1 21 21 H 1.08993 * 109.47710 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47266 * 300.00961 * 1 2 3 23 23 H 1.09007 * 109.46983 * 60.00227 * 1 2 3 24 24 H 1.09000 * 109.47009 * 57.29095 * 4 2 1 25 25 H 1.08994 * 109.46862 * 177.29204 * 4 2 1 26 26 H 1.08997 * 109.47367 * 304.57128 * 5 4 2 27 27 H 1.09001 * 109.46999 * 64.57143 * 5 4 2 28 28 H 0.96993 * 120.00373 * 179.97438 * 9 8 6 29 29 H 1.08993 * 109.46589 * 65.82429 * 15 14 2 30 30 H 1.09008 * 109.45230 * 305.84946 * 15 14 2 31 31 H 1.08999 * 109.50233 * 180.87647 * 16 15 14 32 32 H 1.08996 * 109.50131 * 60.75888 * 16 15 14 33 33 H 1.08992 * 109.52503 * 297.74638 * 17 16 15 34 34 H 1.08994 * 109.50644 * 62.28367 * 19 17 16 35 35 H 1.09004 * 109.49953 * 182.40328 * 19 17 16 36 36 H 1.09003 * 109.46097 * 294.17151 * 20 14 2 37 37 H 1.09002 * 109.46886 * 54.14055 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5863 0.0385 2.4976 6 6 2.1812 -0.6070 3.7224 7 1 2.8194 -1.4724 3.6208 8 6 1.9117 -0.0924 4.9728 9 7 1.1349 0.9616 5.0967 10 14 2.6498 -0.8922 6.4910 11 1 3.9635 -0.2679 6.7903 12 1 1.7358 -0.6999 7.6456 13 1 2.8365 -2.3445 6.2442 14 7 2.0196 -0.6926 -1.1993 15 6 1.5940 0.0039 -2.4199 16 6 1.9953 -0.8202 -3.6455 17 6 3.5142 -1.0137 -3.6492 18 9 3.8809 -1.8134 -4.7370 19 6 3.9368 -1.6976 -2.3460 20 6 3.4793 -0.8480 -1.1581 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6374 -1.7338 1.2741 25 1 3.1288 -0.7634 1.2255 26 1 1.9203 1.0741 2.4341 27 1 0.4987 0.0110 2.5644 28 1 0.9450 1.3235 5.9763 29 1 2.0741 0.9813 -2.4665 30 1 0.5115 0.1313 -2.4065 31 1 1.6931 -0.2954 -4.5518 32 1 1.5046 -1.7927 -3.6066 33 1 4.0048 -0.0436 -3.7273 34 1 3.4767 -2.6838 -2.2867 35 1 5.0219 -1.7996 -2.3239 36 1 3.9506 0.1334 -1.2107 37 1 3.7663 -1.3392 -0.2284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:35 Heat of formation + Delta-G solvation = -88.985843 kcal Electronic energy + Delta-G solvation = -16402.313787 eV Core-core repulsion = 13706.114081 eV Total energy + Delta-G solvation = -2696.199706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.60876 -40.20576 -36.62194 -34.80004 -32.42070 -31.95343 -29.86423 -27.19835 -25.09768 -24.14940 -23.04324 -21.13557 -20.69112 -18.59072 -17.50444 -17.05979 -16.49427 -16.06250 -15.88907 -15.74961 -15.68254 -14.99697 -14.39682 -14.07341 -13.73836 -13.65226 -13.50556 -13.14393 -12.85414 -12.73750 -12.48879 -12.35318 -12.24408 -12.15879 -11.92762 -11.58733 -11.31641 -11.29493 -11.13628 -10.84056 -10.51582 -9.25311 -8.18930 -6.29309 1.40307 1.41246 1.52488 2.41434 2.88167 3.14430 3.55934 3.59630 3.67868 4.00019 4.02856 4.11088 4.23335 4.37185 4.47564 4.48890 4.61670 4.76826 4.81901 4.84127 4.92416 4.99054 4.99424 5.04391 5.09019 5.16236 5.26118 5.31439 5.42644 5.53559 5.79615 5.87836 6.12794 6.21830 6.30874 6.87896 7.39725 8.92772 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.047530 B = 0.005114 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.964649 B = 5473.806324 C = 5925.320438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 H 0.027 0.973 4 C -0.091 4.091 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.541 5.541 15 C 0.052 3.948 16 C -0.133 4.133 17 C 0.087 3.913 18 F -0.226 7.226 19 C -0.134 4.134 20 C 0.050 3.950 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.052 0.948 26 H -0.013 1.013 27 H 0.000 1.000 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -2.379 -16.756 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 H 0.045 0.955 4 C -0.129 4.129 5 C -0.009 4.009 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.189 1.189 14 N -0.266 5.266 15 C -0.075 4.075 16 C -0.171 4.171 17 C 0.051 3.949 18 F -0.207 7.207 19 C -0.172 4.172 20 C -0.078 4.078 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.005 0.995 27 H 0.019 0.981 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.647 -2.756 -16.677 17.109 hybrid contribution 0.578 0.636 1.118 1.410 sum 3.225 -2.120 -15.560 16.031 Atomic orbital electron populations 1.21807 0.93887 1.02204 1.01457 1.21525 0.96182 0.94629 0.89405 0.95459 1.21561 0.99486 0.98794 0.93077 1.18998 0.95360 0.94133 0.92370 1.21708 1.29840 1.13782 0.92733 0.92498 1.25928 0.95590 0.95546 1.02548 1.70086 1.38399 1.24363 1.24451 0.85498 0.78277 0.79160 0.78436 1.19812 1.20725 1.18869 1.61994 1.11597 1.51166 1.01872 1.22144 1.01949 0.94933 0.88512 1.22127 0.94136 1.02323 0.98546 1.21760 0.96731 0.93569 0.82808 1.92779 1.93218 1.76940 1.57775 1.22124 1.02207 1.00133 0.92752 1.22114 0.87565 0.98909 0.99165 0.92269 0.93472 0.91032 0.93072 0.92926 0.99475 0.98142 0.92818 0.94356 0.89020 0.88724 0.90551 0.88942 0.90646 0.89346 0.94533 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.74 71.98 0.63 -3.69 16 2 C 0.09 3.04 2.17 44.92 0.10 3.14 16 3 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.09 -3.77 4.31 30.60 0.13 -3.63 16 5 C 0.03 1.52 4.56 29.85 0.14 1.65 16 6 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 10 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 14 N -0.54 -15.00 4.52 -871.11 -3.94 -18.94 16 15 C 0.05 1.14 5.26 86.33 0.45 1.59 16 16 C -0.13 -2.51 5.83 30.65 0.18 -2.33 16 17 C 0.09 1.73 3.95 30.67 0.12 1.85 16 18 F -0.23 -5.24 17.09 44.97 0.77 -4.48 16 19 C -0.13 -2.87 5.83 30.65 0.18 -2.70 16 20 C 0.05 1.30 5.08 86.33 0.44 1.74 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.05 1.71 6.60 -2.39 -0.02 1.69 16 23 H 0.07 1.83 6.33 -2.38 -0.02 1.82 16 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.05 2.12 6.04 -2.39 -0.01 2.11 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.00 0.01 6.74 -2.39 -0.02 0.00 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.89 6.08 -2.38 -0.01 1.87 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 2.29 5.80 -2.39 -0.01 2.28 16 Total: -1.00 -62.90 289.25 3.22 -59.68 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.02 Total: 6.41 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.06 Total: -32.61 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.66 Total: -75.41 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.77 Total: -4.48 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -62.90 3.22 -59.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.305 kcal (2) G-P(sol) polarization free energy of solvation -62.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds