Wall clock time and date at job start Sun Mar 29 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46801 * 2 1 4 4 C 1.52997 * 109.46997 * 240.00183 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99904 * 4 2 1 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47309 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47510 * 119.99847 * 10 8 6 13 13 H 1.48506 * 109.47246 * 239.99882 * 10 8 6 14 14 N 1.46898 * 109.47501 * 119.99705 * 2 1 3 15 15 C 1.46848 * 110.99876 * 59.21167 * 14 2 1 16 16 C 1.53037 * 109.52567 * 174.16021 * 15 14 2 17 17 C 1.53117 * 109.27696 * 59.18023 * 16 15 14 18 18 F 1.39894 * 109.52288 * 182.44266 * 17 16 15 19 19 C 1.53124 * 109.15905 * 302.34727 * 17 16 15 20 20 C 1.46844 * 111.00329 * 295.00194 * 14 2 1 21 21 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46972 * 299.99492 * 1 2 3 23 23 H 1.08993 * 109.47331 * 60.00112 * 1 2 3 24 24 H 1.09001 * 109.47502 * 55.00061 * 4 2 1 25 25 H 1.09001 * 109.47289 * 294.99857 * 4 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 27 27 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 28 28 H 0.96996 * 120.00505 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.46433 * 294.17980 * 15 14 2 30 30 H 1.09006 * 109.46205 * 54.14286 * 15 14 2 31 31 H 1.08997 * 109.50227 * 299.23944 * 16 15 14 32 32 H 1.09002 * 109.50273 * 179.12248 * 16 15 14 33 33 H 1.08996 * 109.52406 * 62.24966 * 17 16 15 34 34 H 1.09003 * 109.49890 * 297.70974 * 19 17 16 35 35 H 1.09001 * 109.49829 * 177.59896 * 19 17 16 36 36 H 1.08998 * 109.46218 * 305.85655 * 20 14 2 37 37 H 1.09001 * 109.45854 * 65.82051 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3686 -1.8035 -3.2136 8 6 5.4184 -1.3600 -2.8159 9 7 6.2690 -0.7754 -2.0009 10 14 6.0410 -2.2405 -4.3412 11 1 4.8910 -2.8121 -5.0869 12 1 6.7642 -1.2764 -5.2088 13 1 6.9628 -3.3336 -3.9402 14 7 2.0198 -0.6924 1.1994 15 6 1.5336 -2.0774 1.2429 16 6 2.1779 -2.8088 2.4227 17 6 1.8224 -2.0824 3.7229 18 9 2.4543 -2.7143 4.7992 19 6 2.2966 -0.6293 3.6324 20 6 1.6490 0.0389 2.4176 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6054 -0.2617 -2.1370 25 1 1.7516 -1.7715 -1.2056 26 1 3.8532 0.4370 -1.3574 27 1 3.9994 -1.0727 -0.4261 28 1 7.2197 -0.8017 -2.1916 29 1 0.4502 -2.0784 1.3627 30 1 1.7965 -2.5839 0.3142 31 1 3.2605 -2.8203 2.2965 32 1 1.8049 -3.8322 2.4639 33 1 0.7425 -2.1047 3.8691 34 1 3.3812 -0.6065 3.5253 35 1 2.0086 -0.0955 4.5381 36 1 1.9956 1.0696 2.3422 37 1 0.5650 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:37 Heat of formation + Delta-G solvation = -70.015305 kcal Electronic energy + Delta-G solvation = -16726.491889 eV Core-core repulsion = 14031.114808 eV Total energy + Delta-G solvation = -2695.377082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.52449 -39.13045 -34.89585 -32.84760 -30.96345 -30.23201 -28.71521 -25.24442 -23.83105 -23.12021 -21.33867 -20.15741 -18.94213 -16.41485 -16.11723 -15.77157 -15.24744 -14.91658 -14.64452 -14.38628 -13.90110 -13.38259 -13.00308 -12.60514 -12.42188 -12.16137 -11.83786 -11.73471 -11.67912 -11.35580 -11.07257 -10.90642 -10.80992 -10.44184 -10.34528 -10.24962 -10.00435 -9.58144 -9.21289 -8.88821 -8.25081 -7.82060 -5.89604 -3.91266 3.35440 3.42994 3.46554 4.16303 4.52965 4.61910 4.67719 4.73412 4.98336 5.21472 5.37009 5.40812 5.45895 5.49643 5.54126 5.65767 5.71368 5.77056 5.93001 5.98728 6.10317 6.18694 6.23731 6.28123 6.33946 6.44850 6.64458 6.85353 7.25487 7.48867 7.53009 7.83848 8.04869 8.20233 8.55292 9.17922 9.71733 11.21285 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.006611 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.141641 B = 4234.611539 C = 4729.150729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.519 5.519 15 C 0.054 3.946 16 C -0.142 4.142 17 C 0.091 3.909 18 F -0.218 7.218 19 C -0.142 4.142 20 C 0.057 3.943 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.010 0.990 27 H 0.031 0.969 28 H 0.258 0.742 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 -0.048 9.675 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.097 0.903 4 C -0.142 4.142 5 C -0.008 4.008 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.243 5.243 15 C -0.073 4.073 16 C -0.180 4.180 17 C 0.055 3.945 18 F -0.199 7.199 19 C -0.180 4.180 20 C -0.071 4.071 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.755 -0.045 9.699 14.482 hybrid contribution -0.405 -0.451 -0.742 0.958 sum -11.160 -0.496 8.957 14.319 Atomic orbital electron populations 1.22514 0.98887 1.01626 1.01419 1.21870 0.91050 0.98731 0.90953 0.90285 1.21772 1.00902 0.98314 0.93244 1.19008 0.87997 0.96795 0.97011 1.21369 0.91860 1.34118 1.08460 0.93079 1.24996 0.97158 0.95759 0.96477 1.69984 1.02137 1.44292 1.36843 0.86639 0.78832 0.79548 0.83555 1.19899 1.21148 1.21131 1.62061 1.59490 1.01447 1.01328 1.22079 0.96045 0.89973 0.99237 1.22193 1.03931 0.98829 0.93088 1.21654 0.96229 0.92672 0.83987 1.92788 1.84793 1.84117 1.58224 1.22177 1.03321 0.94184 0.98281 1.21988 0.97106 0.98289 0.89694 0.92716 0.93410 0.92213 0.93210 0.93237 0.97203 0.95027 0.93264 0.95170 0.88752 0.89402 0.90856 0.90787 0.89571 0.90972 0.90268 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 8.50 37.16 0.32 -2.16 16 2 C 0.08 1.35 2.35 -67.71 -0.16 1.19 16 3 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 4 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 5 C 0.03 0.75 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 7 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 N -0.52 -8.30 4.10 -226.70 -0.93 -9.23 16 15 C 0.05 0.80 4.64 -3.83 -0.02 0.78 16 16 C -0.14 -1.96 5.83 -26.65 -0.16 -2.12 16 17 C 0.09 1.16 3.95 -26.61 -0.10 1.05 16 18 F -0.22 -3.17 17.09 2.25 0.04 -3.13 16 19 C -0.14 -1.78 5.83 -26.65 -0.16 -1.93 16 20 C 0.06 0.75 5.02 -3.84 -0.02 0.73 16 21 H 0.05 0.71 6.52 -51.93 -0.34 0.37 16 22 H 0.05 0.57 6.65 -51.93 -0.35 0.22 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.98 6.05 -51.93 -0.31 0.66 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.39 6.62 -51.93 -0.34 0.05 16 30 H 0.09 1.56 5.93 -51.93 -0.31 1.25 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.03 0.37 6.73 -51.93 -0.35 0.02 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -30.31 288.93 -7.95 -38.26 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -6.16 Total: -3.00 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.96 Total: -17.65 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.19 Total: -35.75 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.31 -7.95 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.758 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds