Wall clock time and date at job start Sun Mar 29 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46801 * 2 1 4 4 C 1.52997 * 109.46997 * 240.00183 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99904 * 4 2 1 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47309 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47510 * 119.99847 * 10 8 6 13 13 H 1.48506 * 109.47246 * 239.99882 * 10 8 6 14 14 N 1.46898 * 109.47501 * 119.99705 * 2 1 3 15 15 C 1.46848 * 110.99876 * 59.21167 * 14 2 1 16 16 C 1.53037 * 109.52567 * 174.16021 * 15 14 2 17 17 C 1.53117 * 109.27696 * 59.18023 * 16 15 14 18 18 F 1.39894 * 109.52288 * 182.44266 * 17 16 15 19 19 C 1.53124 * 109.15905 * 302.34727 * 17 16 15 20 20 C 1.46844 * 111.00329 * 295.00194 * 14 2 1 21 21 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46972 * 299.99492 * 1 2 3 23 23 H 1.08993 * 109.47331 * 60.00112 * 1 2 3 24 24 H 1.09001 * 109.47502 * 55.00061 * 4 2 1 25 25 H 1.09001 * 109.47289 * 294.99857 * 4 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 27 27 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 28 28 H 0.96996 * 120.00505 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.46433 * 294.17980 * 15 14 2 30 30 H 1.09006 * 109.46205 * 54.14286 * 15 14 2 31 31 H 1.08997 * 109.50227 * 299.23944 * 16 15 14 32 32 H 1.09002 * 109.50273 * 179.12248 * 16 15 14 33 33 H 1.08996 * 109.52406 * 62.24966 * 17 16 15 34 34 H 1.09003 * 109.49890 * 297.70974 * 19 17 16 35 35 H 1.09001 * 109.49829 * 177.59896 * 19 17 16 36 36 H 1.08998 * 109.46218 * 305.85655 * 20 14 2 37 37 H 1.09001 * 109.45854 * 65.82051 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3686 -1.8035 -3.2136 8 6 5.4184 -1.3600 -2.8159 9 7 6.2690 -0.7754 -2.0009 10 14 6.0410 -2.2405 -4.3412 11 1 4.8910 -2.8121 -5.0869 12 1 6.7642 -1.2764 -5.2088 13 1 6.9628 -3.3336 -3.9402 14 7 2.0198 -0.6924 1.1994 15 6 1.5336 -2.0774 1.2429 16 6 2.1779 -2.8088 2.4227 17 6 1.8224 -2.0824 3.7229 18 9 2.4543 -2.7143 4.7992 19 6 2.2966 -0.6293 3.6324 20 6 1.6490 0.0389 2.4176 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6054 -0.2617 -2.1370 25 1 1.7516 -1.7715 -1.2056 26 1 3.8532 0.4370 -1.3574 27 1 3.9994 -1.0727 -0.4261 28 1 7.2197 -0.8017 -2.1916 29 1 0.4502 -2.0784 1.3627 30 1 1.7965 -2.5839 0.3142 31 1 3.2605 -2.8203 2.2965 32 1 1.8049 -3.8322 2.4639 33 1 0.7425 -2.1047 3.8691 34 1 3.3812 -0.6065 3.5253 35 1 2.0086 -0.0955 4.5381 36 1 1.9956 1.0696 2.3422 37 1 0.5650 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:37 Heat of formation + Delta-G solvation = -88.140281 kcal Electronic energy + Delta-G solvation = -16727.277847 eV Core-core repulsion = 14031.114808 eV Total energy + Delta-G solvation = -2696.163040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.60673 -40.32952 -36.35337 -34.80448 -32.28127 -31.71380 -30.04526 -27.07759 -25.04940 -24.28561 -23.06200 -21.46266 -20.21596 -18.36910 -17.55292 -16.86800 -16.54163 -16.33437 -15.99560 -15.80024 -15.14725 -14.65883 -14.52530 -14.11122 -13.79921 -13.46580 -13.27927 -13.19690 -12.95663 -12.81026 -12.73115 -12.34980 -12.26435 -12.07932 -11.70598 -11.53387 -11.35756 -11.23067 -11.04798 -10.86760 -10.48999 -8.98408 -8.13700 -6.24204 1.39687 1.39997 1.52897 2.43359 3.01255 3.18844 3.59494 3.61673 3.70237 4.00166 4.02026 4.23512 4.32706 4.33705 4.43345 4.53316 4.63233 4.73853 4.77937 4.83697 4.94625 5.01008 5.04589 5.11626 5.12596 5.16824 5.30236 5.36183 5.48441 5.60232 5.89558 6.02713 6.30689 6.34246 6.37817 6.96375 7.44177 8.97639 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.006611 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.141641 B = 4234.611539 C = 4729.150729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.094 4.094 5 C 0.039 3.961 6 C -0.541 4.541 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.551 5.551 15 C 0.059 3.941 16 C -0.141 4.141 17 C 0.092 3.908 18 F -0.229 7.229 19 C -0.139 4.139 20 C 0.060 3.940 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.053 0.947 26 H -0.022 1.022 27 H 0.002 0.998 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.479 -0.456 9.741 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.132 4.132 5 C 0.002 3.998 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.206 1.206 14 N -0.276 5.276 15 C -0.069 4.069 16 C -0.179 4.179 17 C 0.056 3.944 18 F -0.210 7.210 19 C -0.177 4.177 20 C -0.067 4.067 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.071 0.929 26 H -0.004 1.004 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.779 -0.453 9.768 16.091 hybrid contribution 0.261 -0.312 -0.740 0.844 sum -12.518 -0.764 9.028 15.453 Atomic orbital electron populations 1.22372 0.95612 1.02466 1.02799 1.21653 0.93499 0.97349 0.89561 0.91474 1.21584 0.96629 0.99276 0.95677 1.18816 0.92074 0.93986 0.94916 1.21832 0.92433 1.34257 1.09361 0.92615 1.25945 0.97486 0.96535 0.99920 1.70128 1.02527 1.45686 1.38957 0.85485 0.78425 0.78290 0.79345 1.18585 1.20463 1.20613 1.61958 1.60982 1.02362 1.02249 1.21999 0.97517 0.89085 0.98264 1.22163 1.01823 1.00084 0.93850 1.21758 0.97745 0.92094 0.82754 1.92769 1.85239 1.84348 1.58661 1.22164 1.01633 0.94669 0.99232 1.22019 0.98605 0.97791 0.88331 0.92054 0.91268 0.91635 0.92993 0.92860 1.00388 0.97986 0.93089 0.92466 0.91304 0.92745 0.89182 0.87627 0.92314 0.88437 0.90414 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.50 71.98 0.61 -3.49 16 2 C 0.09 2.82 2.35 44.92 0.11 2.92 16 3 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 4 C -0.09 -3.81 4.44 30.60 0.14 -3.68 16 5 C 0.04 2.11 4.86 29.85 0.15 2.26 16 6 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 8 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 9 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 N -0.55 -17.34 4.10 -871.14 -3.57 -20.91 16 15 C 0.06 1.67 4.64 86.33 0.40 2.07 16 16 C -0.14 -3.80 5.83 30.65 0.18 -3.62 16 17 C 0.09 2.16 3.95 30.67 0.12 2.28 16 18 F -0.23 -6.33 17.09 44.97 0.77 -5.56 16 19 C -0.14 -3.28 5.83 30.65 0.18 -3.10 16 20 C 0.06 1.46 5.02 86.32 0.43 1.89 16 21 H 0.06 1.38 6.52 -2.39 -0.02 1.36 16 22 H 0.07 1.37 6.65 -2.39 -0.02 1.35 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 2.11 6.05 -2.39 -0.01 2.09 16 26 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 27 H 0.00 0.10 7.75 -2.39 -0.02 0.08 16 28 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 29 H 0.06 1.31 6.62 -2.39 -0.02 1.29 16 30 H 0.07 2.28 5.93 -2.38 -0.01 2.26 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 37 H 0.06 1.12 6.73 -2.39 -0.02 1.10 16 Total: -1.00 -66.91 288.93 3.54 -63.37 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.02 Total: 7.28 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 3.01 Total: -33.36 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.28 Total: -79.12 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.77 Total: -5.56 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.91 3.54 -63.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.770 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds