Wall clock time and date at job start Sun Mar 29 2020 21:39:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.46801 * 2 1
4 4 C 1.52997 * 109.46997 * 240.00183 * 2 1 3
5 5 C 1.53006 * 109.47127 * 174.99904 * 4 2 1
6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 2
7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4
8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4
9 9 N 1.31511 * 120.00192 * 359.97438 * 8 6 5
10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5
11 11 H 1.48507 * 109.47309 * 359.97438 * 10 8 6
12 12 H 1.48497 * 109.47510 * 119.99847 * 10 8 6
13 13 H 1.48506 * 109.47246 * 239.99882 * 10 8 6
14 14 N 1.46898 * 109.47501 * 119.99705 * 2 1 3
15 15 C 1.46848 * 110.99876 * 59.21167 * 14 2 1
16 16 C 1.53037 * 109.52567 * 174.16021 * 15 14 2
17 17 C 1.53117 * 109.27696 * 59.18023 * 16 15 14
18 18 F 1.39894 * 109.52288 * 182.44266 * 17 16 15
19 19 C 1.53124 * 109.15905 * 302.34727 * 17 16 15
20 20 C 1.46844 * 111.00329 * 295.00194 * 14 2 1
21 21 H 1.09001 * 109.46791 * 180.02562 * 1 2 3
22 22 H 1.08996 * 109.46972 * 299.99492 * 1 2 3
23 23 H 1.08993 * 109.47331 * 60.00112 * 1 2 3
24 24 H 1.09001 * 109.47502 * 55.00061 * 4 2 1
25 25 H 1.09001 * 109.47289 * 294.99857 * 4 2 1
26 26 H 1.09001 * 109.47002 * 299.99574 * 5 4 2
27 27 H 1.08993 * 109.46955 * 60.00011 * 5 4 2
28 28 H 0.96996 * 120.00505 * 179.97438 * 9 8 6
29 29 H 1.08998 * 109.46433 * 294.17980 * 15 14 2
30 30 H 1.09006 * 109.46205 * 54.14286 * 15 14 2
31 31 H 1.08997 * 109.50227 * 299.23944 * 16 15 14
32 32 H 1.09002 * 109.50273 * 179.12248 * 16 15 14
33 33 H 1.08996 * 109.52406 * 62.24966 * 17 16 15
34 34 H 1.09003 * 109.49890 * 297.70974 * 19 17 16
35 35 H 1.09001 * 109.49829 * 177.59896 * 19 17 16
36 36 H 1.08998 * 109.46218 * 305.85655 * 20 14 2
37 37 H 1.09001 * 109.45854 * 65.82051 * 20 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5649 -0.6132 -1.3137
6 6 4.0671 -1.3231 -2.5445
7 1 3.3686 -1.8035 -3.2136
8 6 5.4184 -1.3600 -2.8159
9 7 6.2690 -0.7754 -2.0009
10 14 6.0410 -2.2405 -4.3412
11 1 4.8910 -2.8121 -5.0869
12 1 6.7642 -1.2764 -5.2088
13 1 6.9628 -3.3336 -3.9402
14 7 2.0198 -0.6924 1.1994
15 6 1.5336 -2.0774 1.2429
16 6 2.1779 -2.8088 2.4227
17 6 1.8224 -2.0824 3.7229
18 9 2.4543 -2.7143 4.7992
19 6 2.2966 -0.6293 3.6324
20 6 1.6490 0.0389 2.4176
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5137 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 1.6054 -0.2617 -2.1370
25 1 1.7516 -1.7715 -1.2056
26 1 3.8532 0.4370 -1.3574
27 1 3.9994 -1.0727 -0.4261
28 1 7.2197 -0.8017 -2.1916
29 1 0.4502 -2.0784 1.3627
30 1 1.7965 -2.5839 0.3142
31 1 3.2605 -2.8203 2.2965
32 1 1.8049 -3.8322 2.4639
33 1 0.7425 -2.1047 3.8691
34 1 3.3812 -0.6065 3.5253
35 1 2.0086 -0.0955 4.5381
36 1 1.9956 1.0696 2.3422
37 1 0.5650 0.0280 2.5320
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172492219.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:37
Heat of formation + Delta-G solvation = -88.140281 kcal
Electronic energy + Delta-G solvation = -16727.277847 eV
Core-core repulsion = 14031.114808 eV
Total energy + Delta-G solvation = -2696.163040 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-48.60673 -40.32952 -36.35337 -34.80448 -32.28127 -31.71380 -30.04526 -27.07759
-25.04940 -24.28561 -23.06200 -21.46266 -20.21596 -18.36910 -17.55292 -16.86800
-16.54163 -16.33437 -15.99560 -15.80024 -15.14725 -14.65883 -14.52530 -14.11122
-13.79921 -13.46580 -13.27927 -13.19690 -12.95663 -12.81026 -12.73115 -12.34980
-12.26435 -12.07932 -11.70598 -11.53387 -11.35756 -11.23067 -11.04798 -10.86760
-10.48999 -8.98408 -8.13700 -6.24204 1.39687 1.39997 1.52897 2.43359
3.01255 3.18844 3.59494 3.61673 3.70237 4.00166 4.02026 4.23512
4.32706 4.33705 4.43345 4.53316 4.63233 4.73853 4.77937 4.83697
4.94625 5.01008 5.04589 5.11626 5.12596 5.16824 5.30236 5.36183
5.48441 5.60232 5.89558 6.02713 6.30689 6.34246 6.37817 6.96375
7.44177 8.97639
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.028885 B = 0.006611 C = 0.005919
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 969.141641 B = 4234.611539 C = 4729.150729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.087 3.913
3 H 0.067 0.933
4 C -0.094 4.094
5 C 0.039 3.961
6 C -0.541 4.541
7 H 0.056 0.944
8 C -0.002 4.002
9 N -0.932 5.932
10 Si 0.960 3.040
11 H -0.262 1.262
12 H -0.279 1.279
13 H -0.280 1.280
14 N -0.551 5.551
15 C 0.059 3.941
16 C -0.141 4.141
17 C 0.092 3.908
18 F -0.229 7.229
19 C -0.139 4.139
20 C 0.060 3.940
21 H 0.060 0.940
22 H 0.068 0.932
23 H 0.065 0.935
24 H 0.051 0.949
25 H 0.053 0.947
26 H -0.022 1.022
27 H 0.002 0.998
28 H 0.260 0.740
29 H 0.057 0.943
30 H 0.069 0.931
31 H 0.054 0.946
32 H 0.090 0.910
33 H 0.106 0.894
34 H 0.058 0.942
35 H 0.097 0.903
36 H 0.077 0.923
37 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.479 -0.456 9.741 16.637
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.021 4.021
3 H 0.085 0.915
4 C -0.132 4.132
5 C 0.002 3.998
6 C -0.579 4.579
7 H 0.074 0.926
8 C -0.199 4.199
9 N -0.573 5.573
10 Si 0.785 3.215
11 H -0.186 1.186
12 H -0.205 1.205
13 H -0.206 1.206
14 N -0.276 5.276
15 C -0.069 4.069
16 C -0.179 4.179
17 C 0.056 3.944
18 F -0.210 7.210
19 C -0.177 4.177
20 C -0.067 4.067
21 H 0.079 0.921
22 H 0.087 0.913
23 H 0.084 0.916
24 H 0.070 0.930
25 H 0.071 0.929
26 H -0.004 1.004
27 H 0.020 0.980
28 H 0.069 0.931
29 H 0.075 0.925
30 H 0.087 0.913
31 H 0.073 0.927
32 H 0.108 0.892
33 H 0.124 0.876
34 H 0.077 0.923
35 H 0.116 0.884
36 H 0.096 0.904
37 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -12.779 -0.453 9.768 16.091
hybrid contribution 0.261 -0.312 -0.740 0.844
sum -12.518 -0.764 9.028 15.453
Atomic orbital electron populations
1.22372 0.95612 1.02466 1.02799 1.21653 0.93499 0.97349 0.89561
0.91474 1.21584 0.96629 0.99276 0.95677 1.18816 0.92074 0.93986
0.94916 1.21832 0.92433 1.34257 1.09361 0.92615 1.25945 0.97486
0.96535 0.99920 1.70128 1.02527 1.45686 1.38957 0.85485 0.78425
0.78290 0.79345 1.18585 1.20463 1.20613 1.61958 1.60982 1.02362
1.02249 1.21999 0.97517 0.89085 0.98264 1.22163 1.01823 1.00084
0.93850 1.21758 0.97745 0.92094 0.82754 1.92769 1.85239 1.84348
1.58661 1.22164 1.01633 0.94669 0.99232 1.22019 0.98605 0.97791
0.88331 0.92054 0.91268 0.91635 0.92993 0.92860 1.00388 0.97986
0.93089 0.92466 0.91304 0.92745 0.89182 0.87627 0.92314 0.88437
0.90414 0.92460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.11 8.50 71.98 0.61 -3.49 16
2 C 0.09 2.82 2.35 44.92 0.11 2.92 16
3 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16
4 C -0.09 -3.81 4.44 30.60 0.14 -3.68 16
5 C 0.04 2.11 4.86 29.85 0.15 2.26 16
6 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16
7 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16
8 C 0.00 -0.09 5.46 84.65 0.46 0.37 16
9 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16
10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16
11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
14 N -0.55 -17.34 4.10 -871.14 -3.57 -20.91 16
15 C 0.06 1.67 4.64 86.33 0.40 2.07 16
16 C -0.14 -3.80 5.83 30.65 0.18 -3.62 16
17 C 0.09 2.16 3.95 30.67 0.12 2.28 16
18 F -0.23 -6.33 17.09 44.97 0.77 -5.56 16
19 C -0.14 -3.28 5.83 30.65 0.18 -3.10 16
20 C 0.06 1.46 5.02 86.32 0.43 1.89 16
21 H 0.06 1.38 6.52 -2.39 -0.02 1.36 16
22 H 0.07 1.37 6.65 -2.39 -0.02 1.35 16
23 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16
24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
25 H 0.05 2.11 6.05 -2.39 -0.01 2.09 16
26 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16
27 H 0.00 0.10 7.75 -2.39 -0.02 0.08 16
28 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16
29 H 0.06 1.31 6.62 -2.39 -0.02 1.29 16
30 H 0.07 2.28 5.93 -2.38 -0.01 2.26 16
31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16
34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16
37 H 0.06 1.12 6.73 -2.39 -0.02 1.10 16
Total: -1.00 -66.91 288.93 3.54 -63.37
By element:
Atomic # 1 Polarization: 6.26 SS G_CDS: 1.02 Total: 7.28 kcal
Atomic # 6 Polarization: -36.37 SS G_CDS: 3.01 Total: -33.36 kcal
Atomic # 7 Polarization: -75.84 SS G_CDS: -3.28 Total: -79.12 kcal
Atomic # 9 Polarization: -6.33 SS G_CDS: 0.77 Total: -5.56 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -66.91 3.54 -63.37 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172492219.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.770 kcal
(2) G-P(sol) polarization free energy of solvation -66.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.140 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds