Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47308 * 2 1 4 4 C 1.53001 * 109.47222 * 239.99851 * 2 1 3 5 5 C 1.52997 * 109.47072 * 174.99847 * 4 2 1 6 6 C 1.50699 * 109.47157 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00433 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99453 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00050 * 179.72792 * 8 6 5 11 11 H 1.48503 * 109.46747 * 180.27363 * 10 8 6 12 12 H 1.48504 * 109.46835 * 300.26909 * 10 8 6 13 13 H 1.48495 * 109.47521 * 60.26990 * 10 8 6 14 14 N 1.46903 * 109.47303 * 119.99508 * 2 1 3 15 15 C 1.48554 * 110.99694 * 48.21442 * 14 2 1 16 16 C 1.54377 * 104.59806 * 200.95758 * 15 14 2 17 17 H 1.09000 * 110.32925 * 264.96163 * 16 15 14 18 18 F 1.39900 * 110.41200 * 142.79077 * 16 15 14 19 19 C 1.54269 * 105.05697 * 23.85667 * 16 15 14 20 20 C 1.48558 * 111.00130 * 292.79799 * 14 2 1 21 21 H 1.09000 * 110.41109 * 40.14090 * 20 14 2 22 22 C 1.53000 * 110.41481 * 277.81782 * 20 14 2 23 23 H 1.08997 * 109.47072 * 172.44206 * 1 2 3 24 24 H 1.09006 * 109.47040 * 292.44173 * 1 2 3 25 25 H 1.09005 * 109.47023 * 52.43844 * 1 2 3 26 26 H 1.09000 * 109.46852 * 54.99810 * 4 2 1 27 27 H 1.08999 * 109.46836 * 294.99931 * 4 2 1 28 28 H 1.09000 * 109.47313 * 60.00245 * 5 4 2 29 29 H 1.08999 * 109.47358 * 299.99764 * 5 4 2 30 30 H 0.96997 * 120.00513 * 359.73232 * 9 8 6 31 31 H 1.09003 * 110.41603 * 319.74347 * 15 14 2 32 32 H 1.09008 * 110.41071 * 82.18449 * 15 14 2 33 33 H 1.08994 * 110.32020 * 241.10302 * 19 16 15 34 34 H 1.09002 * 110.32392 * 118.89422 * 19 16 15 35 35 H 1.09003 * 109.46841 * 59.99937 * 22 20 14 36 36 H 1.08993 * 109.47364 * 179.97438 * 22 20 14 37 37 H 1.08996 * 109.46681 * 300.00309 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5437 7 1 3.3687 -1.8047 -3.2129 8 6 5.4186 -1.3614 -2.8150 9 7 6.2690 -0.7759 -2.0004 10 14 6.0419 -2.2492 -4.3357 11 1 7.5224 -2.1494 -4.3951 12 1 5.6442 -3.6786 -4.2722 13 1 5.4547 -1.6255 -5.5487 14 7 2.0197 -0.6924 1.1995 15 6 1.3259 -1.9929 1.3840 16 6 1.5167 -2.3272 2.8790 17 1 2.3811 -2.9773 3.0143 18 9 0.3668 -2.9354 3.3937 19 6 1.7566 -0.9670 3.5663 20 6 1.6905 0.0744 2.4286 21 1 0.6886 0.4975 2.3558 22 6 2.7207 1.1820 2.6585 23 1 -0.3633 -1.0187 -0.1352 24 1 -0.3633 0.3923 0.9499 25 1 -0.3633 0.6265 -0.8147 26 1 1.6054 -0.2618 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 3.9995 -1.0728 -0.4259 29 1 3.8532 0.4370 -1.3574 30 1 5.9454 -0.3146 -1.2109 31 1 0.2661 -1.8952 1.1485 32 1 1.7853 -2.7606 0.7612 33 1 2.7386 -0.9497 4.0388 34 1 0.9774 -0.7726 4.3033 35 1 2.7205 1.8611 1.8059 36 1 2.4647 1.7344 3.5625 37 1 3.7106 0.7398 2.7706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = -66.094289 kcal Electronic energy + Delta-G solvation = -16827.690436 eV Core-core repulsion = 14132.483383 eV Total energy + Delta-G solvation = -2695.207054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.60568 -39.35458 -34.85306 -32.92798 -30.97410 -29.69090 -28.27027 -25.61157 -24.71189 -22.35956 -21.34432 -20.23958 -18.98302 -16.84918 -16.53040 -16.29014 -15.03876 -14.47529 -14.16051 -14.07075 -13.84751 -13.64692 -13.05662 -12.75182 -12.63250 -12.33329 -12.05592 -11.83786 -11.38368 -11.23798 -11.17707 -10.94589 -10.70991 -10.56551 -10.42491 -10.19989 -10.04946 -9.79214 -9.58118 -8.40560 -8.23054 -8.07950 -6.24373 -3.91906 3.48463 3.50737 3.69315 4.02267 4.40337 4.49070 4.62715 4.79355 4.91800 5.08991 5.28251 5.35912 5.44089 5.48434 5.52899 5.56146 5.66177 5.73967 5.86970 5.92130 5.93889 6.09451 6.15174 6.23289 6.24837 6.42217 6.52646 6.68566 7.09751 7.14727 7.33867 7.62695 7.82813 8.36743 8.60383 9.02317 9.80014 11.16634 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.006424 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.371088 B = 4357.686458 C = 4420.441031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 H 0.080 0.920 4 C -0.092 4.092 5 C 0.018 3.982 6 C -0.602 4.602 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.066 2.934 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.290 1.290 14 N -0.482 5.482 15 C 0.002 3.998 16 C 0.082 3.918 17 H 0.096 0.904 18 F -0.215 7.215 19 C -0.144 4.144 20 C 0.051 3.949 21 H 0.055 0.945 22 C -0.135 4.135 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.023 0.977 29 H -0.001 1.001 30 H 0.270 0.730 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.742 0.983 10.113 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.039 4.039 3 H 0.098 0.902 4 C -0.130 4.130 5 C -0.019 4.019 6 C -0.641 4.641 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.894 3.106 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.216 1.216 14 N -0.206 5.206 15 C -0.126 4.126 16 C 0.045 3.955 17 H 0.114 0.886 18 F -0.196 7.196 19 C -0.182 4.182 20 C -0.057 4.057 21 H 0.073 0.927 22 C -0.193 4.193 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.805 0.519 9.200 12.745 hybrid contribution -2.431 0.475 0.857 2.621 sum -11.237 0.994 10.057 15.113 Atomic orbital electron populations 1.22524 0.98534 1.02065 1.01455 1.22033 0.91481 0.98856 0.91546 0.90191 1.21529 0.99937 0.98415 0.93107 1.19106 0.89767 0.95873 0.97189 1.22140 0.94549 1.37788 1.09589 0.93819 1.25766 0.93527 0.97004 1.02667 1.70751 1.37266 1.33290 1.13943 0.83599 0.76145 0.75836 0.74983 1.20845 1.21600 1.21624 1.65621 1.52012 1.01793 1.01190 1.23770 0.99321 0.94745 0.94757 1.22348 0.84979 0.94382 0.93773 0.88625 1.92794 1.53240 1.85220 1.88380 1.22987 1.03596 0.93600 0.98003 1.22696 0.98113 0.94613 0.90285 0.92727 1.21699 0.99345 0.97305 1.00939 0.92203 0.93086 0.92045 0.93128 0.93312 0.95906 0.98237 0.91970 0.91836 0.88621 0.89545 0.90337 0.92368 0.92724 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 8.17 37.16 0.30 -2.31 16 2 C 0.07 1.17 2.29 -67.71 -0.15 1.01 16 3 H 0.08 1.39 7.21 -51.93 -0.37 1.01 16 4 C -0.09 -1.91 4.64 -26.73 -0.12 -2.04 16 5 C 0.02 0.46 4.17 -27.89 -0.12 0.34 16 6 C -0.60 -17.60 9.11 -34.44 -0.31 -17.91 16 7 H 0.04 1.26 7.74 -52.48 -0.41 0.85 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 9 N -0.92 -28.72 13.65 55.43 0.76 -27.96 16 10 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.48 -7.82 4.48 -214.24 -0.96 -8.78 16 15 C 0.00 0.04 5.33 -2.19 -0.01 0.02 16 16 C 0.08 1.09 4.84 -25.35 -0.12 0.96 16 17 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 18 F -0.22 -3.04 17.10 2.25 0.04 -3.00 16 19 C -0.14 -1.72 6.40 -25.35 -0.16 -1.88 16 20 C 0.05 0.69 2.75 -66.07 -0.18 0.50 16 21 H 0.05 0.70 5.98 -51.93 -0.31 0.39 16 22 C -0.14 -1.73 9.36 37.16 0.35 -1.38 16 23 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 24 H 0.05 0.65 6.11 -51.93 -0.32 0.33 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.02 7.14 -51.93 -0.37 0.65 16 28 H 0.02 0.63 7.62 -51.93 -0.40 0.23 16 29 H 0.00 -0.02 8.00 -51.93 -0.42 -0.43 16 30 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 31 H 0.06 0.92 5.36 -51.93 -0.28 0.64 16 32 H 0.10 1.55 7.67 -51.92 -0.40 1.15 16 33 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 34 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 35 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -31.17 289.25 -7.53 -38.69 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.00 Total: -1.80 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.63 Total: -22.36 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.20 Total: -36.74 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.17 -7.53 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.402 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds