Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47308 * 2 1 4 4 C 1.53001 * 109.47222 * 239.99851 * 2 1 3 5 5 C 1.52997 * 109.47072 * 174.99847 * 4 2 1 6 6 C 1.50699 * 109.47157 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00433 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99453 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00050 * 179.72792 * 8 6 5 11 11 H 1.48503 * 109.46747 * 180.27363 * 10 8 6 12 12 H 1.48504 * 109.46835 * 300.26909 * 10 8 6 13 13 H 1.48495 * 109.47521 * 60.26990 * 10 8 6 14 14 N 1.46903 * 109.47303 * 119.99508 * 2 1 3 15 15 C 1.48554 * 110.99694 * 48.21442 * 14 2 1 16 16 C 1.54377 * 104.59806 * 200.95758 * 15 14 2 17 17 H 1.09000 * 110.32925 * 264.96163 * 16 15 14 18 18 F 1.39900 * 110.41200 * 142.79077 * 16 15 14 19 19 C 1.54269 * 105.05697 * 23.85667 * 16 15 14 20 20 C 1.48558 * 111.00130 * 292.79799 * 14 2 1 21 21 H 1.09000 * 110.41109 * 40.14090 * 20 14 2 22 22 C 1.53000 * 110.41481 * 277.81782 * 20 14 2 23 23 H 1.08997 * 109.47072 * 172.44206 * 1 2 3 24 24 H 1.09006 * 109.47040 * 292.44173 * 1 2 3 25 25 H 1.09005 * 109.47023 * 52.43844 * 1 2 3 26 26 H 1.09000 * 109.46852 * 54.99810 * 4 2 1 27 27 H 1.08999 * 109.46836 * 294.99931 * 4 2 1 28 28 H 1.09000 * 109.47313 * 60.00245 * 5 4 2 29 29 H 1.08999 * 109.47358 * 299.99764 * 5 4 2 30 30 H 0.96997 * 120.00513 * 359.73232 * 9 8 6 31 31 H 1.09003 * 110.41603 * 319.74347 * 15 14 2 32 32 H 1.09008 * 110.41071 * 82.18449 * 15 14 2 33 33 H 1.08994 * 110.32020 * 241.10302 * 19 16 15 34 34 H 1.09002 * 110.32392 * 118.89422 * 19 16 15 35 35 H 1.09003 * 109.46841 * 59.99937 * 22 20 14 36 36 H 1.08993 * 109.47364 * 179.97438 * 22 20 14 37 37 H 1.08996 * 109.46681 * 300.00309 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5437 7 1 3.3687 -1.8047 -3.2129 8 6 5.4186 -1.3614 -2.8150 9 7 6.2690 -0.7759 -2.0004 10 14 6.0419 -2.2492 -4.3357 11 1 7.5224 -2.1494 -4.3951 12 1 5.6442 -3.6786 -4.2722 13 1 5.4547 -1.6255 -5.5487 14 7 2.0197 -0.6924 1.1995 15 6 1.3259 -1.9929 1.3840 16 6 1.5167 -2.3272 2.8790 17 1 2.3811 -2.9773 3.0143 18 9 0.3668 -2.9354 3.3937 19 6 1.7566 -0.9670 3.5663 20 6 1.6905 0.0744 2.4286 21 1 0.6886 0.4975 2.3558 22 6 2.7207 1.1820 2.6585 23 1 -0.3633 -1.0187 -0.1352 24 1 -0.3633 0.3923 0.9499 25 1 -0.3633 0.6265 -0.8147 26 1 1.6054 -0.2618 -2.1369 27 1 1.7517 -1.7715 -1.2055 28 1 3.9995 -1.0728 -0.4259 29 1 3.8532 0.4370 -1.3574 30 1 5.9454 -0.3146 -1.2109 31 1 0.2661 -1.8952 1.1485 32 1 1.7853 -2.7606 0.7612 33 1 2.7386 -0.9497 4.0388 34 1 0.9774 -0.7726 4.3033 35 1 2.7205 1.8611 1.8059 36 1 2.4647 1.7344 3.5625 37 1 3.7106 0.7398 2.7706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = -85.022637 kcal Electronic energy + Delta-G solvation = -16828.511231 eV Core-core repulsion = 14132.483383 eV Total energy + Delta-G solvation = -2696.027848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.68863 -40.56546 -36.51389 -34.81590 -32.08110 -31.45523 -29.48312 -26.80357 -26.57431 -23.95080 -22.95583 -21.41714 -20.29680 -18.80104 -17.96626 -17.42869 -16.11043 -15.85965 -15.61510 -15.41861 -15.24026 -15.13124 -14.73678 -14.25891 -14.05863 -13.79435 -13.28514 -13.12800 -12.82249 -12.67689 -12.46940 -12.24988 -12.23600 -11.97408 -11.81590 -11.64336 -11.59397 -11.48927 -11.38575 -10.56335 -10.48558 -9.33121 -8.63438 -6.32730 1.51714 1.60716 1.79912 2.58914 2.84992 3.21001 3.31574 3.43808 3.71526 3.88357 3.92815 4.08643 4.17012 4.29954 4.37112 4.43027 4.56472 4.62806 4.69158 4.74756 4.80545 4.87621 4.88805 4.95437 5.04627 5.14290 5.19743 5.25601 5.37506 5.49144 5.66791 5.94295 6.08383 6.11275 6.27542 6.65897 7.49235 8.77192 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.006424 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.371088 B = 4357.686458 C = 4420.441031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.072 0.928 4 C -0.082 4.082 5 C 0.026 3.974 6 C -0.622 4.622 7 H 0.045 0.955 8 C -0.040 4.040 9 N -0.939 5.939 10 Si 1.115 2.885 11 H -0.283 1.283 12 H -0.270 1.270 13 H -0.269 1.269 14 N -0.509 5.509 15 C 0.002 3.998 16 C 0.084 3.916 17 H 0.100 0.900 18 F -0.218 7.218 19 C -0.136 4.136 20 C 0.051 3.949 21 H 0.067 0.933 22 C -0.133 4.133 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.001 0.999 29 H -0.024 1.024 30 H 0.255 0.745 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 0.781 10.436 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 H 0.090 0.910 4 C -0.120 4.120 5 C -0.011 4.011 6 C -0.660 4.660 7 H 0.063 0.937 8 C -0.237 4.237 9 N -0.576 5.576 10 Si 0.937 3.063 11 H -0.208 1.208 12 H -0.196 1.196 13 H -0.195 1.195 14 N -0.234 5.234 15 C -0.126 4.126 16 C 0.047 3.953 17 H 0.118 0.882 18 F -0.199 7.199 19 C -0.174 4.174 20 C -0.057 4.057 21 H 0.085 0.915 22 C -0.190 4.190 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.019 0.981 29 H -0.006 1.006 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.107 0.324 9.540 13.902 hybrid contribution -2.031 0.552 0.779 2.244 sum -12.138 0.875 10.319 15.956 Atomic orbital electron populations 1.22399 0.95689 1.02551 1.02876 1.21798 0.93611 0.97659 0.90207 0.91009 1.21352 0.96141 0.98913 0.95553 1.18948 0.93392 0.93584 0.95138 1.22613 0.95022 1.37783 1.10568 0.93702 1.27388 0.94291 0.96998 1.05068 1.70892 1.37701 1.34750 1.14290 0.82970 0.75685 0.75765 0.71928 1.20826 1.19574 1.19460 1.65539 1.53042 1.02732 1.02061 1.23727 0.99375 0.93737 0.95793 1.22326 0.84916 0.95310 0.92704 0.88202 1.92790 1.53470 1.85368 1.88277 1.22971 1.04802 0.91965 0.97665 1.22790 0.98710 0.94816 0.89344 0.91482 1.21695 0.98485 0.97120 1.01734 0.92036 0.91244 0.91146 0.93131 0.93588 0.98095 1.00608 0.93526 0.90995 0.90751 0.88789 0.88345 0.93753 0.89821 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.55 8.17 71.98 0.59 -3.96 16 2 C 0.08 2.53 2.29 44.91 0.10 2.63 16 3 H 0.07 2.50 7.21 -2.38 -0.02 2.48 16 4 C -0.08 -3.43 4.64 30.59 0.14 -3.29 16 5 C 0.03 1.42 4.17 29.85 0.12 1.55 16 6 C -0.62 -36.88 9.11 25.60 0.23 -36.65 16 7 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 8 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16 9 N -0.94 -60.11 13.65 21.45 0.29 -59.82 16 10 Si 1.12 51.76 29.90 68.60 2.05 53.81 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 N -0.51 -16.29 4.48 -831.73 -3.73 -20.02 16 15 C 0.00 0.06 5.33 86.45 0.46 0.52 16 16 C 0.08 2.10 4.84 31.49 0.15 2.25 16 17 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 18 F -0.22 -5.71 17.10 44.97 0.77 -4.94 16 19 C -0.14 -2.93 6.40 31.49 0.20 -2.73 16 20 C 0.05 1.27 2.75 45.06 0.12 1.40 16 21 H 0.07 1.52 5.98 -2.39 -0.01 1.51 16 22 C -0.13 -3.25 9.36 71.98 0.67 -2.58 16 23 H 0.06 1.57 6.38 -2.39 -0.02 1.56 16 24 H 0.07 1.55 6.11 -2.38 -0.01 1.54 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.93 7.14 -2.39 -0.02 1.91 16 28 H 0.00 0.04 7.62 -2.39 -0.02 0.02 16 29 H -0.02 -1.41 8.00 -2.39 -0.02 -1.43 16 30 H 0.26 16.63 7.22 -92.71 -0.67 15.96 16 31 H 0.07 1.96 5.36 -2.39 -0.01 1.95 16 32 H 0.07 2.45 7.67 -2.38 -0.02 2.43 16 33 H 0.09 1.90 7.82 -2.39 -0.02 1.88 16 34 H 0.10 1.77 8.04 -2.39 -0.02 1.75 16 35 H 0.04 1.19 7.30 -2.39 -0.02 1.17 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16 Total: -1.00 -67.41 289.25 3.78 -63.63 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.13 Total: 10.15 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 3.27 Total: -42.81 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.44 Total: -79.84 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.77 Total: -4.94 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -67.41 3.78 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.391 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds