Wall clock time and date at job start Sun Mar 29 2020 21:39:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09006 * 109.47308 * 2 1
4 4 C 1.53001 * 109.47222 * 239.99851 * 2 1 3
5 5 C 1.52997 * 109.47072 * 174.99847 * 4 2 1
6 6 C 1.50699 * 109.47157 * 179.97438 * 5 4 2
7 7 H 1.08008 * 119.99931 * 0.02562 * 6 5 4
8 8 C 1.37883 * 120.00433 * 180.02562 * 6 5 4
9 9 N 1.31513 * 119.99453 * 359.97438 * 8 6 5
10 10 Si 1.86796 * 120.00050 * 179.72792 * 8 6 5
11 11 H 1.48503 * 109.46747 * 180.27363 * 10 8 6
12 12 H 1.48504 * 109.46835 * 300.26909 * 10 8 6
13 13 H 1.48495 * 109.47521 * 60.26990 * 10 8 6
14 14 N 1.46903 * 109.47303 * 119.99508 * 2 1 3
15 15 C 1.48554 * 110.99694 * 48.21442 * 14 2 1
16 16 C 1.54377 * 104.59806 * 200.95758 * 15 14 2
17 17 H 1.09000 * 110.32925 * 264.96163 * 16 15 14
18 18 F 1.39900 * 110.41200 * 142.79077 * 16 15 14
19 19 C 1.54269 * 105.05697 * 23.85667 * 16 15 14
20 20 C 1.48558 * 111.00130 * 292.79799 * 14 2 1
21 21 H 1.09000 * 110.41109 * 40.14090 * 20 14 2
22 22 C 1.53000 * 110.41481 * 277.81782 * 20 14 2
23 23 H 1.08997 * 109.47072 * 172.44206 * 1 2 3
24 24 H 1.09006 * 109.47040 * 292.44173 * 1 2 3
25 25 H 1.09005 * 109.47023 * 52.43844 * 1 2 3
26 26 H 1.09000 * 109.46852 * 54.99810 * 4 2 1
27 27 H 1.08999 * 109.46836 * 294.99931 * 4 2 1
28 28 H 1.09000 * 109.47313 * 60.00245 * 5 4 2
29 29 H 1.08999 * 109.47358 * 299.99764 * 5 4 2
30 30 H 0.96997 * 120.00513 * 359.73232 * 9 8 6
31 31 H 1.09003 * 110.41603 * 319.74347 * 15 14 2
32 32 H 1.09008 * 110.41071 * 82.18449 * 15 14 2
33 33 H 1.08994 * 110.32020 * 241.10302 * 19 16 15
34 34 H 1.09002 * 110.32392 * 118.89422 * 19 16 15
35 35 H 1.09003 * 109.46841 * 59.99937 * 22 20 14
36 36 H 1.08993 * 109.47364 * 179.97438 * 22 20 14
37 37 H 1.08996 * 109.46681 * 300.00309 * 22 20 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5648 -0.6133 -1.3137
6 6 4.0672 -1.3242 -2.5437
7 1 3.3687 -1.8047 -3.2129
8 6 5.4186 -1.3614 -2.8150
9 7 6.2690 -0.7759 -2.0004
10 14 6.0419 -2.2492 -4.3357
11 1 7.5224 -2.1494 -4.3951
12 1 5.6442 -3.6786 -4.2722
13 1 5.4547 -1.6255 -5.5487
14 7 2.0197 -0.6924 1.1995
15 6 1.3259 -1.9929 1.3840
16 6 1.5167 -2.3272 2.8790
17 1 2.3811 -2.9773 3.0143
18 9 0.3668 -2.9354 3.3937
19 6 1.7566 -0.9670 3.5663
20 6 1.6905 0.0744 2.4286
21 1 0.6886 0.4975 2.3558
22 6 2.7207 1.1820 2.6585
23 1 -0.3633 -1.0187 -0.1352
24 1 -0.3633 0.3923 0.9499
25 1 -0.3633 0.6265 -0.8147
26 1 1.6054 -0.2618 -2.1369
27 1 1.7517 -1.7715 -1.2055
28 1 3.9995 -1.0728 -0.4259
29 1 3.8532 0.4370 -1.3574
30 1 5.9454 -0.3146 -1.2109
31 1 0.2661 -1.8952 1.1485
32 1 1.7853 -2.7606 0.7612
33 1 2.7386 -0.9497 4.0388
34 1 0.9774 -0.7726 4.3033
35 1 2.7205 1.8611 1.8059
36 1 2.4647 1.7344 3.5625
37 1 3.7106 0.7398 2.7706
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172494351.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:26
Heat of formation + Delta-G solvation = -85.022637 kcal
Electronic energy + Delta-G solvation = -16828.511231 eV
Core-core repulsion = 14132.483383 eV
Total energy + Delta-G solvation = -2696.027848 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-48.68863 -40.56546 -36.51389 -34.81590 -32.08110 -31.45523 -29.48312 -26.80357
-26.57431 -23.95080 -22.95583 -21.41714 -20.29680 -18.80104 -17.96626 -17.42869
-16.11043 -15.85965 -15.61510 -15.41861 -15.24026 -15.13124 -14.73678 -14.25891
-14.05863 -13.79435 -13.28514 -13.12800 -12.82249 -12.67689 -12.46940 -12.24988
-12.23600 -11.97408 -11.81590 -11.64336 -11.59397 -11.48927 -11.38575 -10.56335
-10.48558 -9.33121 -8.63438 -6.32730 1.51714 1.60716 1.79912 2.58914
2.84992 3.21001 3.31574 3.43808 3.71526 3.88357 3.92815 4.08643
4.17012 4.29954 4.37112 4.43027 4.56472 4.62806 4.69158 4.74756
4.80545 4.87621 4.88805 4.95437 5.04627 5.14290 5.19743 5.25601
5.37506 5.49144 5.66791 5.94295 6.08383 6.11275 6.27542 6.65897
7.49235 8.77192
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.031056 B = 0.006424 C = 0.006333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.371088 B = 4357.686458 C = 4420.441031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.076 3.924
3 H 0.072 0.928
4 C -0.082 4.082
5 C 0.026 3.974
6 C -0.622 4.622
7 H 0.045 0.955
8 C -0.040 4.040
9 N -0.939 5.939
10 Si 1.115 2.885
11 H -0.283 1.283
12 H -0.270 1.270
13 H -0.269 1.269
14 N -0.509 5.509
15 C 0.002 3.998
16 C 0.084 3.916
17 H 0.100 0.900
18 F -0.218 7.218
19 C -0.136 4.136
20 C 0.051 3.949
21 H 0.067 0.933
22 C -0.133 4.133
23 H 0.061 0.939
24 H 0.069 0.931
25 H 0.070 0.930
26 H 0.050 0.950
27 H 0.045 0.955
28 H 0.001 0.999
29 H -0.024 1.024
30 H 0.255 0.745
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.093 0.907
34 H 0.098 0.902
35 H 0.043 0.957
36 H 0.083 0.917
37 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.014 0.781 10.436 15.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.033 4.033
3 H 0.090 0.910
4 C -0.120 4.120
5 C -0.011 4.011
6 C -0.660 4.660
7 H 0.063 0.937
8 C -0.237 4.237
9 N -0.576 5.576
10 Si 0.937 3.063
11 H -0.208 1.208
12 H -0.196 1.196
13 H -0.195 1.195
14 N -0.234 5.234
15 C -0.126 4.126
16 C 0.047 3.953
17 H 0.118 0.882
18 F -0.199 7.199
19 C -0.174 4.174
20 C -0.057 4.057
21 H 0.085 0.915
22 C -0.190 4.190
23 H 0.080 0.920
24 H 0.088 0.912
25 H 0.089 0.911
26 H 0.069 0.931
27 H 0.064 0.936
28 H 0.019 0.981
29 H -0.006 1.006
30 H 0.065 0.935
31 H 0.090 0.910
32 H 0.092 0.908
33 H 0.112 0.888
34 H 0.117 0.883
35 H 0.062 0.938
36 H 0.102 0.898
37 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -10.107 0.324 9.540 13.902
hybrid contribution -2.031 0.552 0.779 2.244
sum -12.138 0.875 10.319 15.956
Atomic orbital electron populations
1.22399 0.95689 1.02551 1.02876 1.21798 0.93611 0.97659 0.90207
0.91009 1.21352 0.96141 0.98913 0.95553 1.18948 0.93392 0.93584
0.95138 1.22613 0.95022 1.37783 1.10568 0.93702 1.27388 0.94291
0.96998 1.05068 1.70892 1.37701 1.34750 1.14290 0.82970 0.75685
0.75765 0.71928 1.20826 1.19574 1.19460 1.65539 1.53042 1.02732
1.02061 1.23727 0.99375 0.93737 0.95793 1.22326 0.84916 0.95310
0.92704 0.88202 1.92790 1.53470 1.85368 1.88277 1.22971 1.04802
0.91965 0.97665 1.22790 0.98710 0.94816 0.89344 0.91482 1.21695
0.98485 0.97120 1.01734 0.92036 0.91244 0.91146 0.93131 0.93588
0.98095 1.00608 0.93526 0.90995 0.90751 0.88789 0.88345 0.93753
0.89821 0.93128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.55 8.17 71.98 0.59 -3.96 16
2 C 0.08 2.53 2.29 44.91 0.10 2.63 16
3 H 0.07 2.50 7.21 -2.38 -0.02 2.48 16
4 C -0.08 -3.43 4.64 30.59 0.14 -3.29 16
5 C 0.03 1.42 4.17 29.85 0.12 1.55 16
6 C -0.62 -36.88 9.11 25.60 0.23 -36.65 16
7 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16
8 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16
9 N -0.94 -60.11 13.65 21.45 0.29 -59.82 16
10 Si 1.12 51.76 29.90 68.60 2.05 53.81 16
11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16
14 N -0.51 -16.29 4.48 -831.73 -3.73 -20.02 16
15 C 0.00 0.06 5.33 86.45 0.46 0.52 16
16 C 0.08 2.10 4.84 31.49 0.15 2.25 16
17 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16
18 F -0.22 -5.71 17.10 44.97 0.77 -4.94 16
19 C -0.14 -2.93 6.40 31.49 0.20 -2.73 16
20 C 0.05 1.27 2.75 45.06 0.12 1.40 16
21 H 0.07 1.52 5.98 -2.39 -0.01 1.51 16
22 C -0.13 -3.25 9.36 71.98 0.67 -2.58 16
23 H 0.06 1.57 6.38 -2.39 -0.02 1.56 16
24 H 0.07 1.55 6.11 -2.38 -0.01 1.54 16
25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16
26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
27 H 0.05 1.93 7.14 -2.39 -0.02 1.91 16
28 H 0.00 0.04 7.62 -2.39 -0.02 0.02 16
29 H -0.02 -1.41 8.00 -2.39 -0.02 -1.43 16
30 H 0.26 16.63 7.22 -92.71 -0.67 15.96 16
31 H 0.07 1.96 5.36 -2.39 -0.01 1.95 16
32 H 0.07 2.45 7.67 -2.38 -0.02 2.43 16
33 H 0.09 1.90 7.82 -2.39 -0.02 1.88 16
34 H 0.10 1.77 8.04 -2.39 -0.02 1.75 16
35 H 0.04 1.19 7.30 -2.39 -0.02 1.17 16
36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16
Total: -1.00 -67.41 289.25 3.78 -63.63
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: 1.13 Total: 10.15 kcal
Atomic # 6 Polarization: -46.08 SS G_CDS: 3.27 Total: -42.81 kcal
Atomic # 7 Polarization: -76.41 SS G_CDS: -3.44 Total: -79.84 kcal
Atomic # 9 Polarization: -5.71 SS G_CDS: 0.77 Total: -4.94 kcal
Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal
Total: -67.41 3.78 -63.63 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172494351.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.391 kcal
(2) G-P(sol) polarization free energy of solvation -67.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds