Wall clock time and date at job start Sun Mar 29 2020 21:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47075 * 2 1 4 4 C 1.53000 * 109.47056 * 120.00290 * 2 1 3 5 5 C 1.53007 * 109.47011 * 179.87998 * 4 2 1 6 6 C 1.50696 * 109.46827 * 175.02341 * 5 4 2 7 7 H 1.08000 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99722 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99834 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99950 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47315 * 90.00366 * 10 8 6 12 12 H 1.48496 * 109.47401 * 210.00081 * 10 8 6 13 13 H 1.48499 * 109.47349 * 330.00370 * 10 8 6 14 14 N 1.46902 * 109.47091 * 240.00102 * 2 1 3 15 15 C 1.48564 * 111.00034 * 75.27795 * 14 2 1 16 16 C 1.54378 * 104.59535 * 200.96225 * 15 14 2 17 17 H 1.09001 * 110.32196 * 264.95633 * 16 15 14 18 18 F 1.39901 * 110.32468 * 142.75180 * 16 15 14 19 19 C 1.54257 * 105.06388 * 23.85123 * 16 15 14 20 20 C 1.48721 * 111.01695 * 319.77160 * 14 2 1 21 21 H 1.09000 * 110.39094 * 40.24168 * 20 14 2 22 22 C 1.53004 * 110.51049 * 277.75270 * 20 14 2 23 23 H 1.09000 * 109.47115 * 67.92520 * 1 2 3 24 24 H 1.09008 * 109.47034 * 187.92464 * 1 2 3 25 25 H 1.09000 * 109.47415 * 307.92383 * 1 2 3 26 26 H 1.08998 * 109.47188 * 299.87997 * 4 2 1 27 27 H 1.08997 * 109.47271 * 59.88211 * 4 2 1 28 28 H 1.08996 * 109.46886 * 295.02120 * 5 4 2 29 29 H 1.08995 * 109.46879 * 55.02261 * 5 4 2 30 30 H 0.97000 * 119.99825 * 179.97438 * 9 8 6 31 31 H 1.09000 * 110.40884 * 82.17817 * 15 14 2 32 32 H 1.08994 * 110.50939 * 319.78866 * 15 14 2 33 33 H 1.08998 * 110.32444 * 118.89672 * 19 16 15 34 34 H 1.09000 * 110.32556 * 241.00458 * 19 16 15 35 35 H 1.09002 * 109.46577 * 317.92467 * 22 20 14 36 36 H 1.08994 * 109.47177 * 77.91831 * 22 20 14 37 37 H 1.08998 * 109.46908 * 197.92744 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7239 1.2477 6 6 4.0725 -1.3249 2.5350 7 1 3.3708 -1.6701 3.2799 8 6 5.4282 -1.4332 2.7623 9 7 5.8667 -1.9572 3.8860 10 14 6.6418 -0.8355 1.4741 11 1 6.9657 0.5920 1.7238 12 1 7.8839 -1.6456 1.5507 13 1 6.0405 -0.9778 0.1238 14 7 2.0196 -0.6925 -1.1995 15 6 1.8648 0.1595 -2.4066 16 6 1.8908 -0.8327 -3.5890 17 1 2.8988 -0.9093 -3.9968 18 9 0.9930 -0.4281 -4.5827 19 6 1.4518 -2.1839 -2.9882 20 6 1.1981 -1.8970 -1.4927 21 1 0.1425 -1.6881 -1.3194 22 6 1.6566 -3.0798 -0.6371 23 1 -0.3633 0.3862 -0.9523 24 1 -0.3633 -1.0179 0.1417 25 1 -0.3634 0.6316 0.8106 26 1 1.6784 -0.2063 2.1392 27 1 1.6749 -1.7483 1.2502 28 1 3.9315 -1.3142 0.4057 29 1 3.9350 0.2991 1.1575 30 1 6.8204 -2.0337 4.0457 31 1 2.6929 0.8642 -2.4833 32 1 0.9145 0.6925 -2.3785 33 1 0.5368 -2.5320 -3.4675 34 1 2.2436 -2.9243 -3.1027 35 1 2.7459 -3.1052 -0.6063 36 1 1.2670 -2.9689 0.3747 37 1 1.2836 -4.0078 -1.0705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:28 Heat of formation + Delta-G solvation = -72.495816 kcal Electronic energy + Delta-G solvation = -16987.273040 eV Core-core repulsion = 14291.788395 eV Total energy + Delta-G solvation = -2695.484645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.63386 -40.56655 -36.14475 -34.55946 -32.54045 -31.69306 -29.48918 -27.22467 -26.53978 -23.44444 -22.07562 -22.06361 -20.09413 -18.80309 -17.84537 -17.16544 -16.36407 -16.27997 -15.97447 -15.16551 -15.06521 -14.85078 -14.50367 -14.27482 -13.80750 -13.64503 -13.34812 -13.11716 -12.95230 -12.92961 -12.51514 -12.28450 -12.14166 -11.96039 -11.66545 -11.60172 -11.41397 -11.30041 -11.05150 -10.97159 -10.67577 -9.28173 -8.24445 -6.25898 1.37253 1.39513 1.54202 2.40898 2.91901 3.12330 3.37595 3.51343 3.78627 3.96050 4.01717 4.17750 4.26009 4.36388 4.42938 4.53786 4.67335 4.69307 4.79949 4.80966 4.89401 4.92511 4.94723 5.06781 5.14947 5.20172 5.24161 5.40732 5.45691 5.72290 5.74178 5.81789 6.03225 6.17247 6.37349 6.83039 7.38511 8.92667 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.007541 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.768209 B = 3712.330319 C = 3998.950280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.094 4.094 5 C 0.007 3.993 6 C -0.525 4.525 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.956 5.956 10 Si 0.949 3.051 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.244 1.244 14 N -0.510 5.510 15 C 0.006 3.994 16 C 0.085 3.915 17 H 0.107 0.893 18 F -0.220 7.220 19 C -0.141 4.141 20 C 0.051 3.949 21 H 0.074 0.926 22 C -0.140 4.140 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.002 0.998 30 H 0.263 0.737 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 2.470 -16.465 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 H 0.093 0.907 4 C -0.132 4.132 5 C -0.030 4.030 6 C -0.564 4.564 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.598 5.598 10 Si 0.772 3.228 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.167 1.167 14 N -0.235 5.235 15 C -0.122 4.122 16 C 0.048 3.952 17 H 0.125 0.875 18 F -0.201 7.201 19 C -0.179 4.179 20 C -0.056 4.056 21 H 0.092 0.908 22 C -0.197 4.197 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.959 2.308 -16.289 19.231 hybrid contribution 0.000 0.392 0.166 0.426 sum -9.959 2.700 -16.124 19.143 Atomic orbital electron populations 1.22373 0.95898 1.02620 1.02446 1.21812 0.93600 0.97644 0.90352 0.90666 1.21579 0.96279 1.00208 0.95098 1.19300 0.94119 0.95152 0.94439 1.21650 0.92058 1.39361 1.03295 0.95370 1.25982 1.00745 0.95141 0.97484 1.70085 1.14826 1.47823 1.27064 0.85673 0.77767 0.78330 0.80983 1.19665 1.21317 1.16737 1.65616 1.50763 1.05437 1.01651 1.23694 1.02566 0.96225 0.89720 1.22347 0.92587 0.94622 0.85600 0.87540 1.92794 1.71025 1.92133 1.64148 1.22998 1.03692 0.96660 0.94581 1.22859 0.96867 0.91412 0.94506 0.90820 1.21895 1.01598 0.96989 0.99216 0.91741 0.91773 0.91427 0.93718 0.91863 0.95317 0.97964 0.92782 0.88938 0.91952 0.88867 0.89074 0.93382 0.93009 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 7.83 71.98 0.56 -3.58 16 2 C 0.07 2.23 2.35 44.91 0.11 2.34 16 3 H 0.08 2.26 8.01 -2.39 -0.02 2.24 16 4 C -0.09 -3.64 4.40 30.60 0.13 -3.50 16 5 C 0.01 0.35 3.81 29.85 0.11 0.46 16 6 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 7 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 8 C 0.00 0.14 5.47 84.66 0.46 0.60 16 9 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 10 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.24 -11.07 6.54 99.48 0.65 -10.42 16 14 N -0.51 -14.53 4.36 -831.30 -3.63 -18.16 16 15 C 0.01 0.15 6.08 86.45 0.53 0.67 16 16 C 0.09 1.79 4.85 31.49 0.15 1.95 16 17 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 18 F -0.22 -5.07 17.10 44.97 0.77 -4.30 16 19 C -0.14 -2.89 6.37 31.49 0.20 -2.69 16 20 C 0.05 1.26 2.45 45.03 0.11 1.37 16 21 H 0.07 1.68 5.26 -2.39 -0.01 1.67 16 22 C -0.14 -3.87 8.43 71.98 0.61 -3.26 16 23 H 0.06 1.34 6.59 -2.39 -0.02 1.33 16 24 H 0.06 1.50 6.53 -2.38 -0.02 1.49 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.45 4.73 -2.39 -0.01 2.43 16 28 H 0.03 1.38 6.72 -2.39 -0.02 1.36 16 29 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.37 6.51 -2.39 -0.02 1.35 16 33 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 34 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 35 H 0.05 1.58 8.05 -2.39 -0.02 1.56 16 36 H 0.05 1.57 5.65 -2.39 -0.01 1.56 16 37 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -66.72 283.84 3.53 -63.19 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.98 Total: 9.02 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.22 Total: -36.36 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -3.33 Total: -79.31 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.77 Total: -4.30 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -66.72 3.53 -63.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.308 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds