Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46672 * 2 1 4 4 C 1.52999 * 109.47328 * 239.99967 * 2 1 3 5 5 C 1.52998 * 109.47126 * 174.72906 * 4 2 1 6 6 C 1.50703 * 109.47150 * 175.21805 * 5 4 2 7 7 H 1.07993 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00015 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99970 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99838 * 179.72304 * 8 6 5 11 11 H 1.48507 * 109.47196 * 180.27908 * 10 8 6 12 12 H 1.48507 * 109.47411 * 300.27519 * 10 8 6 13 13 H 1.48500 * 109.47086 * 60.27894 * 10 8 6 14 14 N 1.46900 * 109.47243 * 119.99286 * 2 1 3 15 15 C 1.47901 * 110.99718 * 63.16424 * 14 2 1 16 16 C 1.53996 * 107.05706 * 214.15557 * 15 14 2 17 17 H 1.08995 * 110.31320 * 120.13716 * 16 15 14 18 18 F 1.39899 * 110.30429 * 242.30627 * 16 15 14 19 19 C 1.54592 * 105.13879 * 1.21850 * 16 15 14 20 20 C 1.48526 * 111.00201 * 305.76401 * 14 2 1 21 21 H 1.08996 * 110.66745 * 41.28733 * 20 14 2 22 22 C 1.52997 * 110.66663 * 278.15261 * 20 14 2 23 23 H 1.09007 * 109.46729 * 186.70921 * 1 2 3 24 24 H 1.09000 * 109.47463 * 306.70744 * 1 2 3 25 25 H 1.09003 * 109.47309 * 66.71261 * 1 2 3 26 26 H 1.08997 * 109.47142 * 54.72777 * 4 2 1 27 27 H 1.08998 * 109.46979 * 294.72844 * 4 2 1 28 28 H 1.08998 * 109.47399 * 55.21365 * 5 4 2 29 29 H 1.09004 * 109.47099 * 295.21947 * 5 4 2 30 30 H 0.96996 * 120.00259 * 359.71377 * 9 8 6 31 31 H 1.09005 * 109.91701 * 333.50058 * 15 14 2 32 32 H 1.08997 * 109.92352 * 94.59925 * 15 14 2 33 33 H 1.09003 * 110.72487 * 140.31332 * 19 16 15 34 34 H 1.09000 * 110.72699 * 263.60118 * 19 16 15 35 35 H 1.08995 * 109.47525 * 65.11054 * 22 20 14 36 36 H 1.09006 * 109.47255 * 185.10857 * 22 20 14 37 37 H 1.09001 * 109.47403 * 305.10767 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5643 -0.6075 -1.3172 6 6 4.0769 -1.4156 -2.4813 7 1 3.3849 -1.9566 -3.1096 8 6 5.4295 -1.4643 -2.7443 9 7 6.2723 -0.8059 -1.9790 10 14 6.0655 -2.4723 -4.1826 11 1 7.5454 -2.3658 -4.2458 12 1 5.6790 -3.8945 -3.9999 13 1 5.4779 -1.9580 -5.4458 14 7 2.0197 -0.6923 1.1995 15 6 1.6086 -2.1131 1.1963 16 6 1.3527 -2.5126 2.6614 17 1 0.3213 -2.8408 2.7894 18 9 2.2371 -3.5244 3.0502 19 6 1.6129 -1.2282 3.4814 20 6 1.4331 -0.1038 2.4306 21 1 0.3765 0.1205 2.2841 22 6 2.2006 1.1524 2.8472 23 1 -0.3633 -1.0207 0.1201 24 1 -0.3634 0.6143 0.8239 25 1 -0.3634 0.4063 -0.9440 26 1 1.6017 -0.2649 -2.1367 27 1 1.7558 -1.7725 -1.2032 28 1 3.9986 -0.9868 -0.3922 29 1 3.8451 0.4375 -1.4486 30 1 5.9420 -0.2827 -1.2320 31 1 0.6954 -2.2341 0.6135 32 1 2.4028 -2.7285 0.7738 33 1 0.8811 -1.1274 4.2830 34 1 2.6270 -1.2243 3.8808 35 1 2.0768 1.9230 2.0864 36 1 1.8132 1.5161 3.7990 37 1 3.2588 0.9133 2.9533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -64.935790 kcal Electronic energy + Delta-G solvation = -16892.653253 eV Core-core repulsion = 14197.496435 eV Total energy + Delta-G solvation = -2695.156817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.47759 -39.41564 -34.82383 -32.87921 -31.01598 -29.60838 -28.36586 -25.61364 -24.69319 -22.24093 -21.41790 -20.33099 -18.78990 -17.13990 -16.52601 -15.95957 -15.14435 -14.49930 -14.24803 -14.11739 -13.63635 -13.48946 -13.01059 -12.77925 -12.47806 -12.22193 -12.11470 -11.84815 -11.61060 -11.25246 -11.09481 -10.85204 -10.68575 -10.65438 -10.48423 -10.17004 -10.03754 -9.75902 -9.58445 -8.38014 -8.19868 -8.00727 -6.22667 -3.90398 3.49572 3.52235 3.70690 4.06960 4.41495 4.52786 4.63832 4.66343 4.88941 5.10609 5.32120 5.37777 5.39635 5.44934 5.52544 5.54992 5.61726 5.69724 5.84475 5.92942 5.99072 6.12753 6.14410 6.21241 6.33426 6.40838 6.50778 6.73832 7.08961 7.19484 7.38153 7.63238 7.83084 8.37429 8.61707 9.03642 9.81705 11.18323 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.007050 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.697697 B = 3970.435089 C = 4265.855379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 H 0.081 0.919 4 C -0.098 4.098 5 C 0.016 3.984 6 C -0.602 4.602 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.066 2.934 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.290 1.290 14 N -0.489 5.489 15 C 0.009 3.991 16 C 0.080 3.920 17 H 0.085 0.915 18 F -0.208 7.208 19 C -0.143 4.143 20 C 0.052 3.948 21 H 0.060 0.940 22 C -0.134 4.134 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.024 0.976 29 H 0.000 1.000 30 H 0.270 0.730 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 0.979 9.955 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.135 4.135 5 C -0.021 4.021 6 C -0.641 4.641 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.551 5.551 10 Si 0.895 3.105 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.216 1.216 14 N -0.213 5.213 15 C -0.120 4.120 16 C 0.043 3.957 17 H 0.102 0.898 18 F -0.188 7.188 19 C -0.182 4.182 20 C -0.056 4.056 21 H 0.078 0.922 22 C -0.192 4.192 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.018 0.982 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.969 0.555 9.146 14.293 hybrid contribution -2.366 0.314 0.693 2.485 sum -13.335 0.870 9.839 16.595 Atomic orbital electron populations 1.22538 0.98717 1.01520 1.01898 1.22024 0.91306 0.99134 0.91362 0.90068 1.21628 1.00078 0.98539 0.93300 1.19135 0.89704 0.95962 0.97348 1.22111 0.94583 1.32890 1.14494 0.93831 1.25769 0.93592 0.97840 1.01786 1.70746 1.37413 1.29451 1.17525 0.83596 0.76161 0.75687 0.75078 1.20836 1.21590 1.21645 1.65010 1.54291 1.00769 1.01247 1.23524 1.01829 0.92208 0.94394 1.22434 0.91815 0.85906 0.95517 0.89752 1.92830 1.71363 1.62420 1.92224 1.23175 1.03891 0.93409 0.97699 1.22850 0.97494 0.94922 0.90366 0.92225 1.21639 1.01268 0.96043 1.00235 0.92612 0.92883 0.91952 0.93139 0.93115 0.95800 0.98188 0.91946 0.92111 0.88315 0.90445 0.89210 0.92545 0.92654 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 8.37 37.16 0.31 -2.19 16 2 C 0.07 1.18 2.40 -67.71 -0.16 1.02 16 3 H 0.08 1.42 7.67 -51.92 -0.40 1.02 16 4 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 5 C 0.02 0.41 4.23 -27.88 -0.12 0.29 16 6 C -0.60 -17.76 9.11 -34.44 -0.31 -18.08 16 7 H 0.04 1.26 7.74 -52.49 -0.41 0.86 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 9 N -0.91 -29.07 13.65 55.43 0.76 -28.31 16 10 Si 1.07 26.23 29.90 -169.99 -5.08 21.14 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.49 -8.07 4.43 -214.73 -0.95 -9.02 16 15 C 0.01 0.14 4.90 -2.75 -0.01 0.12 16 16 C 0.08 1.07 4.78 -25.37 -0.12 0.95 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 18 F -0.21 -3.32 17.09 2.25 0.04 -3.29 16 19 C -0.14 -1.73 6.29 -24.87 -0.16 -1.89 16 20 C 0.05 0.67 2.71 -65.79 -0.18 0.49 16 21 H 0.06 0.70 5.59 -51.93 -0.29 0.41 16 22 C -0.13 -1.65 9.46 37.16 0.35 -1.30 16 23 H 0.06 0.72 5.97 -51.92 -0.31 0.41 16 24 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.06 6.67 -51.93 -0.35 0.71 16 28 H 0.02 0.67 7.50 -51.93 -0.39 0.28 16 29 H 0.00 0.00 8.00 -51.93 -0.42 -0.42 16 30 H 0.27 8.60 7.22 -40.82 -0.29 8.30 16 31 H 0.06 0.88 5.30 -51.93 -0.28 0.60 16 32 H 0.10 1.87 7.99 -51.93 -0.41 1.45 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -31.96 289.11 -7.52 -39.48 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.02 Total: -1.94 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.62 Total: -22.42 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.19 Total: -37.34 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.08 Total: 21.14 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.96 -7.52 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds