Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46672 * 2 1 4 4 C 1.52999 * 109.47328 * 239.99967 * 2 1 3 5 5 C 1.52998 * 109.47126 * 174.72906 * 4 2 1 6 6 C 1.50703 * 109.47150 * 175.21805 * 5 4 2 7 7 H 1.07993 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00015 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99970 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99838 * 179.72304 * 8 6 5 11 11 H 1.48507 * 109.47196 * 180.27908 * 10 8 6 12 12 H 1.48507 * 109.47411 * 300.27519 * 10 8 6 13 13 H 1.48500 * 109.47086 * 60.27894 * 10 8 6 14 14 N 1.46900 * 109.47243 * 119.99286 * 2 1 3 15 15 C 1.47901 * 110.99718 * 63.16424 * 14 2 1 16 16 C 1.53996 * 107.05706 * 214.15557 * 15 14 2 17 17 H 1.08995 * 110.31320 * 120.13716 * 16 15 14 18 18 F 1.39899 * 110.30429 * 242.30627 * 16 15 14 19 19 C 1.54592 * 105.13879 * 1.21850 * 16 15 14 20 20 C 1.48526 * 111.00201 * 305.76401 * 14 2 1 21 21 H 1.08996 * 110.66745 * 41.28733 * 20 14 2 22 22 C 1.52997 * 110.66663 * 278.15261 * 20 14 2 23 23 H 1.09007 * 109.46729 * 186.70921 * 1 2 3 24 24 H 1.09000 * 109.47463 * 306.70744 * 1 2 3 25 25 H 1.09003 * 109.47309 * 66.71261 * 1 2 3 26 26 H 1.08997 * 109.47142 * 54.72777 * 4 2 1 27 27 H 1.08998 * 109.46979 * 294.72844 * 4 2 1 28 28 H 1.08998 * 109.47399 * 55.21365 * 5 4 2 29 29 H 1.09004 * 109.47099 * 295.21947 * 5 4 2 30 30 H 0.96996 * 120.00259 * 359.71377 * 9 8 6 31 31 H 1.09005 * 109.91701 * 333.50058 * 15 14 2 32 32 H 1.08997 * 109.92352 * 94.59925 * 15 14 2 33 33 H 1.09003 * 110.72487 * 140.31332 * 19 16 15 34 34 H 1.09000 * 110.72699 * 263.60118 * 19 16 15 35 35 H 1.08995 * 109.47525 * 65.11054 * 22 20 14 36 36 H 1.09006 * 109.47255 * 185.10857 * 22 20 14 37 37 H 1.09001 * 109.47403 * 305.10767 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5643 -0.6075 -1.3172 6 6 4.0769 -1.4156 -2.4813 7 1 3.3849 -1.9566 -3.1096 8 6 5.4295 -1.4643 -2.7443 9 7 6.2723 -0.8059 -1.9790 10 14 6.0655 -2.4723 -4.1826 11 1 7.5454 -2.3658 -4.2458 12 1 5.6790 -3.8945 -3.9999 13 1 5.4779 -1.9580 -5.4458 14 7 2.0197 -0.6923 1.1995 15 6 1.6086 -2.1131 1.1963 16 6 1.3527 -2.5126 2.6614 17 1 0.3213 -2.8408 2.7894 18 9 2.2371 -3.5244 3.0502 19 6 1.6129 -1.2282 3.4814 20 6 1.4331 -0.1038 2.4306 21 1 0.3765 0.1205 2.2841 22 6 2.2006 1.1524 2.8472 23 1 -0.3633 -1.0207 0.1201 24 1 -0.3634 0.6143 0.8239 25 1 -0.3634 0.4063 -0.9440 26 1 1.6017 -0.2649 -2.1367 27 1 1.7558 -1.7725 -1.2032 28 1 3.9986 -0.9868 -0.3922 29 1 3.8451 0.4375 -1.4486 30 1 5.9420 -0.2827 -1.2320 31 1 0.6954 -2.2341 0.6135 32 1 2.4028 -2.7285 0.7738 33 1 0.8811 -1.1274 4.2830 34 1 2.6270 -1.2243 3.8808 35 1 2.0768 1.9230 2.0864 36 1 1.8132 1.5161 3.7990 37 1 3.2588 0.9133 2.9533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -85.237737 kcal Electronic energy + Delta-G solvation = -16893.533611 eV Core-core repulsion = 14197.496435 eV Total energy + Delta-G solvation = -2696.037176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.64620 -40.62583 -36.50089 -34.78223 -32.09252 -31.41028 -29.54001 -26.71943 -26.66435 -23.87708 -22.95989 -21.53588 -20.09360 -18.83946 -18.24104 -17.15054 -16.22248 -15.87969 -15.65359 -15.40961 -15.33915 -14.97173 -14.75507 -14.27846 -13.85342 -13.59926 -13.25484 -13.11977 -12.93833 -12.68804 -12.68055 -12.30546 -12.03916 -11.98245 -11.77288 -11.75795 -11.57345 -11.47955 -11.38711 -10.57171 -10.51016 -9.21411 -8.66226 -6.35604 1.49506 1.59180 1.78175 2.57249 2.92512 3.18694 3.34017 3.48197 3.59520 3.91584 3.95214 4.14429 4.18323 4.31443 4.36383 4.39826 4.56996 4.66462 4.69484 4.74745 4.79975 4.86765 4.90550 5.06186 5.07628 5.15220 5.22678 5.25921 5.40651 5.48080 5.63543 5.99326 6.06192 6.17719 6.25352 6.62456 7.47089 8.74120 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.007050 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.697697 B = 3970.435089 C = 4265.855379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.070 0.930 4 C -0.088 4.088 5 C 0.023 3.977 6 C -0.621 4.621 7 H 0.046 0.954 8 C -0.043 4.043 9 N -0.939 5.939 10 Si 1.117 2.883 11 H -0.283 1.283 12 H -0.271 1.271 13 H -0.267 1.267 14 N -0.523 5.523 15 C 0.008 3.992 16 C 0.078 3.922 17 H 0.125 0.875 18 F -0.227 7.227 19 C -0.137 4.137 20 C 0.053 3.947 21 H 0.086 0.914 22 C -0.133 4.133 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.048 0.952 28 H -0.003 1.003 29 H -0.025 1.025 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 0.742 10.343 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.125 4.125 5 C -0.014 4.014 6 C -0.659 4.659 7 H 0.065 0.935 8 C -0.240 4.240 9 N -0.576 5.576 10 Si 0.938 3.062 11 H -0.208 1.208 12 H -0.196 1.196 13 H -0.192 1.192 14 N -0.248 5.248 15 C -0.120 4.120 16 C 0.042 3.958 17 H 0.143 0.857 18 F -0.208 7.208 19 C -0.175 4.175 20 C -0.054 4.054 21 H 0.103 0.897 22 C -0.191 4.191 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.015 0.985 29 H -0.007 1.007 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.377 0.329 9.549 16.439 hybrid contribution -1.602 0.420 0.592 1.759 sum -14.980 0.749 10.141 18.105 Atomic orbital electron populations 1.22411 0.95138 1.02678 1.03300 1.21795 0.94002 0.97658 0.89713 0.91223 1.21461 0.95927 0.99140 0.96014 1.18981 0.93735 0.93574 0.95078 1.22594 0.95083 1.32948 1.15242 0.93541 1.27457 0.94446 0.98172 1.03895 1.70894 1.37840 1.30850 1.18041 0.82961 0.75682 0.75086 0.72519 1.20817 1.19604 1.19187 1.64885 1.56090 1.01392 1.02461 1.23435 1.00688 0.91331 0.96534 1.22708 0.93257 0.86099 0.93762 0.85738 1.92791 1.72384 1.63375 1.92247 1.23191 1.04093 0.92082 0.98156 1.22978 0.98563 0.95087 0.88763 0.89664 1.21651 0.99880 0.95847 1.01681 0.91736 0.90384 0.91427 0.92883 0.93355 0.98511 1.00707 0.93688 0.90544 0.92959 0.86531 0.91074 0.93157 0.89522 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 2 C 0.08 2.54 2.40 44.91 0.11 2.65 16 3 H 0.07 2.44 7.67 -2.38 -0.02 2.42 16 4 C -0.09 -3.71 4.44 30.59 0.14 -3.57 16 5 C 0.02 1.29 4.23 29.85 0.13 1.42 16 6 C -0.62 -37.52 9.11 25.60 0.23 -37.28 16 7 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 8 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 9 N -0.94 -61.60 13.65 21.45 0.29 -61.31 16 10 Si 1.12 52.75 29.90 68.60 2.05 54.80 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 14 N -0.52 -17.17 4.43 -833.26 -3.69 -20.86 16 15 C 0.01 0.26 4.90 86.45 0.42 0.69 16 16 C 0.08 1.93 4.78 31.47 0.15 2.08 16 17 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 18 F -0.23 -7.18 17.09 44.97 0.77 -6.41 16 19 C -0.14 -2.95 6.29 31.80 0.20 -2.75 16 20 C 0.05 1.26 2.71 45.26 0.12 1.38 16 21 H 0.09 1.62 5.59 -2.39 -0.01 1.60 16 22 C -0.13 -3.10 9.46 71.98 0.68 -2.42 16 23 H 0.06 1.42 5.97 -2.38 -0.01 1.41 16 24 H 0.08 1.48 6.35 -2.39 -0.02 1.46 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 2.04 6.67 -2.39 -0.02 2.02 16 28 H 0.00 -0.21 7.50 -2.39 -0.02 -0.23 16 29 H -0.03 -1.51 8.00 -2.39 -0.02 -1.53 16 30 H 0.25 17.03 7.22 -92.71 -0.67 16.36 16 31 H 0.08 2.09 5.30 -2.38 -0.01 2.07 16 32 H 0.05 2.08 7.99 -2.39 -0.02 2.07 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.81 8.03 -2.39 -0.02 1.79 16 35 H 0.05 1.21 7.69 -2.39 -0.02 1.20 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.41 289.11 3.80 -68.62 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.13 Total: 8.69 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 3.24 Total: -43.53 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -3.40 Total: -82.17 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.77 Total: -6.41 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -72.41 3.80 -68.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.620 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds