Wall clock time and date at job start Sun Mar 29 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46464 * 2 1 4 4 C 1.53001 * 109.47349 * 119.99366 * 2 1 3 5 5 C 1.52991 * 109.47416 * 185.11080 * 4 2 1 6 6 C 1.50700 * 109.47538 * 179.01235 * 5 4 2 7 7 H 1.08007 * 119.99764 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00321 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48488 * 109.47158 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47063 * 120.00401 * 10 8 6 13 13 H 1.48497 * 109.47042 * 240.00233 * 10 8 6 14 14 N 1.46898 * 109.47718 * 240.00300 * 2 1 3 15 15 C 1.48534 * 110.99337 * 310.44839 * 14 2 1 16 16 C 1.54937 * 103.22425 * 159.72301 * 15 14 2 17 17 H 1.09002 * 110.72694 * 80.93879 * 16 15 14 18 18 C 1.53010 * 110.87582 * 204.15321 * 16 15 14 19 19 C 1.54596 * 102.92316 * 322.57969 * 16 15 14 20 20 H 1.08997 * 110.31242 * 140.87290 * 19 16 15 21 21 F 1.39896 * 110.39389 * 263.00447 * 19 16 15 22 22 C 1.47895 * 111.00075 * 67.83932 * 14 2 1 23 23 H 1.09003 * 109.46877 * 187.70375 * 1 2 3 24 24 H 1.08994 * 109.47593 * 307.70411 * 1 2 3 25 25 H 1.09000 * 109.47591 * 67.71064 * 1 2 3 26 26 H 1.09003 * 109.46372 * 65.11461 * 4 2 1 27 27 H 1.08993 * 109.47172 * 305.11721 * 4 2 1 28 28 H 1.09000 * 109.47829 * 299.02100 * 5 4 2 29 29 H 1.09004 * 109.47042 * 59.01568 * 5 4 2 30 30 H 0.96998 * 120.00483 * 179.97438 * 9 8 6 31 31 H 1.09007 * 110.66616 * 278.15109 * 15 14 2 32 32 H 1.08991 * 110.67133 * 41.28493 * 15 14 2 33 33 H 1.08996 * 109.46700 * 175.04194 * 18 16 15 34 34 H 1.09001 * 109.47024 * 295.04217 * 18 16 15 35 35 H 1.08998 * 109.46774 * 55.04503 * 18 16 15 36 36 H 1.09001 * 109.91875 * 333.51297 * 22 14 2 37 37 H 1.08998 * 109.91536 * 94.60968 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5645 -0.6108 1.3152 6 6 4.0649 -1.3002 2.5584 7 1 3.3654 -1.7704 3.2337 8 6 5.4156 -1.3315 2.8331 9 7 6.2674 -0.7594 2.0105 10 14 6.0358 -2.1867 4.3737 11 1 4.8848 -2.7471 5.1261 12 1 6.9594 -3.2853 3.9923 13 1 6.7563 -1.2081 5.2270 14 7 2.0198 -0.6924 -1.1994 15 6 1.3490 -2.0071 -1.3661 16 6 1.5644 -2.3272 -2.8667 17 1 2.5603 -2.7371 -3.0346 18 6 0.4912 -3.2904 -3.3782 19 6 1.4222 -0.9426 -3.5394 20 1 2.1508 -0.8357 -4.3430 21 9 0.1251 -0.7724 -4.0352 22 6 1.7055 0.0784 -2.4219 23 1 -0.3633 -1.0184 0.1378 24 1 -0.3634 0.6285 0.8130 25 1 -0.3634 0.3898 -0.9509 26 1 1.7534 -1.7718 1.2047 27 1 1.6038 -0.2629 2.1368 28 1 4.0015 -1.0845 0.4362 29 1 3.8519 0.4403 1.3421 30 1 7.2176 -0.7811 2.2039 31 1 1.8229 -2.7630 -0.7397 32 1 0.2861 -1.9284 -1.1382 33 1 0.6112 -3.4307 -4.4524 34 1 0.5941 -4.2506 -2.8727 35 1 -0.4960 -2.8761 -3.1739 36 1 0.8251 0.6987 -2.2537 37 1 2.5546 0.7052 -2.6941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:34 Heat of formation + Delta-G solvation = -61.833513 kcal Electronic energy + Delta-G solvation = -16720.699590 eV Core-core repulsion = 14025.677298 eV Total energy + Delta-G solvation = -2695.022293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.65065 -39.07388 -34.87525 -32.91051 -31.19130 -29.27408 -28.10207 -25.85602 -25.08636 -22.38925 -20.85156 -20.16448 -19.00857 -16.91326 -16.16164 -15.74918 -15.26954 -15.01246 -14.41033 -14.08538 -13.77207 -13.31672 -12.90361 -12.73142 -12.45183 -12.31327 -11.81109 -11.73255 -11.60810 -11.26607 -11.08753 -10.92523 -10.73689 -10.51848 -10.42005 -10.36717 -10.15093 -9.64024 -9.21151 -8.88788 -8.25077 -7.92592 -5.89295 -3.90733 3.35664 3.43049 3.47055 4.18055 4.40054 4.45434 4.53486 4.80366 4.94695 5.18070 5.32434 5.43871 5.46238 5.48531 5.49756 5.65036 5.71078 5.77609 5.84394 5.98585 6.03563 6.09836 6.22224 6.25846 6.38008 6.41494 6.64368 6.82254 7.23276 7.29233 7.46509 7.84326 8.05935 8.20909 8.56244 9.18432 9.72158 11.21772 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038797 B = 0.005910 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.531404 B = 4736.623911 C = 4903.178985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.072 3.928 3 H 0.078 0.922 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.492 5.492 15 C 0.033 3.967 16 C -0.121 4.121 17 H 0.098 0.902 18 C -0.140 4.140 19 C 0.080 3.920 20 H 0.091 0.909 21 F -0.212 7.212 22 C 0.005 3.995 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.009 0.991 30 H 0.258 0.742 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -1.029 -10.564 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 H 0.097 0.903 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.215 5.215 15 C -0.095 4.095 16 C -0.140 4.140 17 H 0.116 0.884 18 C -0.198 4.198 19 C 0.044 3.956 20 H 0.109 0.891 21 F -0.193 7.193 22 C -0.123 4.123 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.444 -1.036 -10.515 14.857 hybrid contribution -0.446 -0.235 0.774 0.924 sum -10.891 -1.271 -9.742 14.667 Atomic orbital electron populations 1.22525 0.98679 1.01971 1.01351 1.22028 0.91269 0.98808 0.91580 0.90347 1.21652 1.00776 0.98233 0.92960 1.19008 0.88080 0.96755 0.96985 1.21376 0.91887 1.34819 1.07604 0.93058 1.24997 0.97134 0.95765 0.96522 1.69988 1.02116 1.44695 1.36610 0.86628 0.78819 0.79423 0.83658 1.19885 1.21122 1.21144 1.65052 1.53505 1.02217 1.00727 1.23423 0.97991 0.93137 0.94910 1.22686 1.01348 0.94151 0.95827 0.88418 1.21648 0.98462 0.98851 1.00833 1.22454 0.79881 0.96640 0.96670 0.89074 1.92776 1.40841 1.96430 1.89294 1.23539 1.01647 0.96395 0.90734 0.92303 0.92166 0.93189 0.93451 0.93243 0.95041 0.97248 0.93272 0.89154 0.92852 0.92500 0.92049 0.92214 0.92330 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 8.19 37.16 0.30 -2.37 16 2 C 0.07 1.23 2.28 -67.72 -0.15 1.08 16 3 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 4 C -0.10 -2.04 4.63 -26.74 -0.12 -2.17 16 5 C 0.03 0.76 4.85 -27.89 -0.14 0.62 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 10 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 N -0.49 -8.20 4.72 -222.51 -1.05 -9.25 16 15 C 0.03 0.49 5.00 -1.90 -0.01 0.48 16 16 C -0.12 -1.52 3.64 -88.75 -0.32 -1.84 16 17 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -1.52 8.69 37.16 0.32 -1.19 16 19 C 0.08 1.00 4.63 -25.37 -0.12 0.88 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 21 F -0.21 -2.85 15.67 2.25 0.04 -2.82 16 22 C 0.01 0.08 6.29 -2.76 -0.02 0.06 16 23 H 0.06 0.83 6.40 -51.93 -0.33 0.49 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.67 6.24 -51.93 -0.32 0.35 16 26 H 0.05 0.97 7.07 -51.93 -0.37 0.60 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.88 7.78 -51.93 -0.40 0.48 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.46 7.64 -51.92 -0.40 1.07 16 32 H 0.05 0.76 5.38 -51.93 -0.28 0.48 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 36 H 0.06 0.80 5.86 -51.93 -0.30 0.50 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -30.60 290.55 -7.73 -38.33 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.15 Total: -2.80 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.66 Total: -18.16 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.31 Total: -35.92 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.60 -7.73 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.499 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds