Wall clock time and date at job start Sun Mar 29 2020 21:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46464 * 2 1 4 4 C 1.53001 * 109.47349 * 119.99366 * 2 1 3 5 5 C 1.52991 * 109.47416 * 185.11080 * 4 2 1 6 6 C 1.50700 * 109.47538 * 179.01235 * 5 4 2 7 7 H 1.08007 * 119.99764 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00321 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48488 * 109.47158 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47063 * 120.00401 * 10 8 6 13 13 H 1.48497 * 109.47042 * 240.00233 * 10 8 6 14 14 N 1.46898 * 109.47718 * 240.00300 * 2 1 3 15 15 C 1.48534 * 110.99337 * 310.44839 * 14 2 1 16 16 C 1.54937 * 103.22425 * 159.72301 * 15 14 2 17 17 H 1.09002 * 110.72694 * 80.93879 * 16 15 14 18 18 C 1.53010 * 110.87582 * 204.15321 * 16 15 14 19 19 C 1.54596 * 102.92316 * 322.57969 * 16 15 14 20 20 H 1.08997 * 110.31242 * 140.87290 * 19 16 15 21 21 F 1.39896 * 110.39389 * 263.00447 * 19 16 15 22 22 C 1.47895 * 111.00075 * 67.83932 * 14 2 1 23 23 H 1.09003 * 109.46877 * 187.70375 * 1 2 3 24 24 H 1.08994 * 109.47593 * 307.70411 * 1 2 3 25 25 H 1.09000 * 109.47591 * 67.71064 * 1 2 3 26 26 H 1.09003 * 109.46372 * 65.11461 * 4 2 1 27 27 H 1.08993 * 109.47172 * 305.11721 * 4 2 1 28 28 H 1.09000 * 109.47829 * 299.02100 * 5 4 2 29 29 H 1.09004 * 109.47042 * 59.01568 * 5 4 2 30 30 H 0.96998 * 120.00483 * 179.97438 * 9 8 6 31 31 H 1.09007 * 110.66616 * 278.15109 * 15 14 2 32 32 H 1.08991 * 110.67133 * 41.28493 * 15 14 2 33 33 H 1.08996 * 109.46700 * 175.04194 * 18 16 15 34 34 H 1.09001 * 109.47024 * 295.04217 * 18 16 15 35 35 H 1.08998 * 109.46774 * 55.04503 * 18 16 15 36 36 H 1.09001 * 109.91875 * 333.51297 * 22 14 2 37 37 H 1.08998 * 109.91536 * 94.60968 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5645 -0.6108 1.3152 6 6 4.0649 -1.3002 2.5584 7 1 3.3654 -1.7704 3.2337 8 6 5.4156 -1.3315 2.8331 9 7 6.2674 -0.7594 2.0105 10 14 6.0358 -2.1867 4.3737 11 1 4.8848 -2.7471 5.1261 12 1 6.9594 -3.2853 3.9923 13 1 6.7563 -1.2081 5.2270 14 7 2.0198 -0.6924 -1.1994 15 6 1.3490 -2.0071 -1.3661 16 6 1.5644 -2.3272 -2.8667 17 1 2.5603 -2.7371 -3.0346 18 6 0.4912 -3.2904 -3.3782 19 6 1.4222 -0.9426 -3.5394 20 1 2.1508 -0.8357 -4.3430 21 9 0.1251 -0.7724 -4.0352 22 6 1.7055 0.0784 -2.4219 23 1 -0.3633 -1.0184 0.1378 24 1 -0.3634 0.6285 0.8130 25 1 -0.3634 0.3898 -0.9509 26 1 1.7534 -1.7718 1.2047 27 1 1.6038 -0.2629 2.1368 28 1 4.0015 -1.0845 0.4362 29 1 3.8519 0.4403 1.3421 30 1 7.2176 -0.7811 2.2039 31 1 1.8229 -2.7630 -0.7397 32 1 0.2861 -1.9284 -1.1382 33 1 0.6112 -3.4307 -4.4524 34 1 0.5941 -4.2506 -2.8727 35 1 -0.4960 -2.8761 -3.1739 36 1 0.8251 0.6987 -2.2537 37 1 2.5546 0.7052 -2.6941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:33 Heat of formation + Delta-G solvation = -80.310665 kcal Electronic energy + Delta-G solvation = -16721.500820 eV Core-core repulsion = 14025.677298 eV Total energy + Delta-G solvation = -2695.823522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.66951 -40.30863 -36.35219 -34.82806 -32.63927 -30.88157 -29.25511 -27.12497 -26.79602 -23.83178 -22.58004 -21.21422 -20.41891 -18.37620 -17.93148 -17.01070 -16.52097 -16.30103 -16.16879 -15.31159 -14.88331 -14.65607 -14.50704 -14.25995 -13.79158 -13.48516 -13.27823 -13.13816 -12.87323 -12.82914 -12.71637 -12.33513 -12.21234 -12.03019 -11.76266 -11.56012 -11.49025 -11.35353 -11.21436 -10.93446 -10.49515 -9.18878 -8.13925 -6.24484 1.40389 1.40589 1.53759 2.43721 2.98958 3.18582 3.37950 3.38920 3.80933 3.90837 4.00684 4.18389 4.23905 4.36657 4.41703 4.52305 4.60766 4.68531 4.79426 4.86201 4.88102 4.94231 4.96464 5.09577 5.12843 5.16909 5.26733 5.39929 5.44106 5.58607 5.87165 5.99689 6.03554 6.19182 6.33875 6.95217 7.43864 8.97693 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038797 B = 0.005910 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.531404 B = 4736.623911 C = 4903.178985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 H 0.068 0.932 4 C -0.086 4.086 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.521 5.521 15 C 0.033 3.967 16 C -0.118 4.118 17 H 0.096 0.904 18 C -0.135 4.135 19 C 0.085 3.915 20 H 0.113 0.887 21 F -0.215 7.215 22 C 0.005 3.995 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.004 0.996 29 H -0.021 1.021 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -1.710 -10.656 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.244 5.244 15 C -0.095 4.095 16 C -0.137 4.137 17 H 0.114 0.886 18 C -0.192 4.192 19 C 0.049 3.951 20 H 0.131 0.869 21 F -0.196 7.196 22 C -0.123 4.123 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.022 0.978 29 H -0.003 1.003 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.481 -1.719 -10.612 15.728 hybrid contribution -0.097 0.000 0.785 0.791 sum -11.577 -1.719 -9.827 15.283 Atomic orbital electron populations 1.22381 0.95890 1.02580 1.02464 1.21819 0.93364 0.97592 0.90468 0.91415 1.21445 0.96836 0.98904 0.95226 1.18819 0.91813 0.94099 0.95074 1.21816 0.92515 1.35124 1.08532 0.92693 1.25941 0.97389 0.96402 1.00063 1.70124 1.02567 1.45921 1.38708 0.85465 0.78399 0.78282 0.79284 1.18712 1.20421 1.20433 1.64949 1.54694 1.03330 1.01464 1.23408 0.97955 0.91808 0.96298 1.22676 1.02014 0.94816 0.94187 0.88571 1.21615 0.97435 0.98554 1.01627 1.22462 0.80134 0.95781 0.96760 0.86903 1.92774 1.41179 1.96399 1.89251 1.23566 1.01911 0.96666 0.90161 0.91888 0.91171 0.91942 0.93366 0.92964 0.97786 1.00261 0.92992 0.91245 0.92006 0.91227 0.91374 0.92503 0.91816 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 8.19 71.98 0.59 -4.11 16 2 C 0.08 2.62 2.28 44.91 0.10 2.72 16 3 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 4 C -0.09 -3.62 4.63 30.59 0.14 -3.48 16 5 C 0.04 2.12 4.85 29.84 0.14 2.27 16 6 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 7 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 9 N -0.93 -58.22 13.29 21.44 0.28 -57.94 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 N -0.52 -17.31 4.72 -857.87 -4.05 -21.36 16 15 C 0.03 0.95 5.00 86.65 0.43 1.39 16 16 C -0.12 -2.80 3.64 -9.58 -0.03 -2.83 16 17 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.13 -2.63 8.69 71.99 0.63 -2.00 16 19 C 0.09 1.96 4.63 31.47 0.15 2.11 16 20 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 21 F -0.22 -5.25 15.67 44.97 0.70 -4.55 16 22 C 0.01 0.14 6.29 86.45 0.54 0.68 16 23 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.54 6.24 -2.39 -0.01 1.52 16 26 H 0.05 1.99 7.07 -2.39 -0.02 1.97 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.00 0.22 7.78 -2.39 -0.02 0.20 16 29 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.07 2.28 7.64 -2.38 -0.02 2.26 16 32 H 0.06 1.68 5.38 -2.39 -0.01 1.66 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.15 7.58 -2.39 -0.02 1.13 16 36 H 0.06 1.64 5.86 -2.39 -0.01 1.63 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -65.72 290.55 3.38 -62.34 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.02 Total: 8.56 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 3.39 Total: -34.31 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -3.76 Total: -79.30 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.70 Total: -4.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.72 3.38 -62.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.971 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds