Wall clock time and date at job start Sun Mar 29 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53001 * 109.46908 * 240.00067 * 2 1 3 5 5 C 1.52999 * 109.47077 * 180.66673 * 4 2 1 6 6 C 1.50693 * 109.47233 * 177.03828 * 5 4 2 7 7 H 1.08005 * 120.00228 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00139 * 179.71990 * 6 5 4 9 9 N 1.31519 * 120.00212 * 180.27683 * 8 6 5 10 10 Si 1.86802 * 119.99810 * 0.28484 * 8 6 5 11 11 H 1.48499 * 109.47491 * 89.99312 * 10 8 6 12 12 H 1.48503 * 109.47069 * 209.99650 * 10 8 6 13 13 H 1.48502 * 109.47032 * 329.99165 * 10 8 6 14 14 N 1.46901 * 109.47099 * 120.00041 * 2 1 3 15 15 C 1.47439 * 111.00063 * 80.52208 * 14 2 1 16 16 C 1.54322 * 107.23147 * 123.25699 * 15 14 2 17 17 C 1.55135 * 103.01788 * 22.28409 * 16 15 14 18 18 C 1.47845 * 110.99771 * 201.36703 * 14 2 1 19 19 H 1.09002 * 110.37457 * 332.46612 * 18 14 2 20 20 C 1.53006 * 110.37413 * 94.80527 * 18 14 2 21 21 F 1.39902 * 109.47023 * 301.87752 * 20 18 14 22 22 H 1.09005 * 109.46990 * 55.50361 * 1 2 3 23 23 H 1.09000 * 109.47345 * 175.50579 * 1 2 3 24 24 H 1.09000 * 109.46892 * 295.50432 * 1 2 3 25 25 H 1.08998 * 109.47100 * 60.66444 * 4 2 1 26 26 H 1.09004 * 109.46831 * 300.66599 * 4 2 1 27 27 H 1.09000 * 109.46745 * 57.03745 * 5 4 2 28 28 H 1.09002 * 109.46983 * 297.04206 * 5 4 2 29 29 H 0.97002 * 119.99860 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.89088 * 242.66611 * 15 14 2 31 31 H 1.09008 * 109.88717 * 3.85219 * 15 14 2 32 32 H 1.08995 * 110.70022 * 140.66837 * 16 15 14 33 33 H 1.09004 * 110.70482 * 263.72894 * 16 15 14 34 34 H 1.08997 * 110.99071 * 82.43911 * 17 16 15 35 35 H 1.09000 * 110.99362 * 206.21554 * 17 16 15 36 36 H 1.09005 * 109.46670 * 61.87315 * 20 18 14 37 37 H 1.08996 * 109.46964 * 181.87113 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7358 -1.2409 6 6 4.0714 -1.5090 -2.4333 7 1 3.3692 -1.9459 -3.1279 8 6 5.4268 -1.6532 -2.6410 9 7 5.8645 -2.3233 -3.6845 10 14 6.6414 -0.8970 -1.4400 11 1 6.9530 -1.8766 -0.3683 12 1 7.8895 -0.5365 -2.1593 13 1 6.0472 0.3234 -0.8376 14 7 2.0197 -0.6925 1.1994 15 6 1.9822 -2.1551 1.0175 16 6 3.4132 -2.6821 1.2538 17 6 4.0604 -1.5633 2.1118 18 6 3.4082 -0.2925 1.5124 19 1 3.9300 0.0095 0.6043 20 6 3.4171 0.8444 2.5363 21 9 2.6951 1.9316 2.0323 22 1 -0.3633 0.5821 -0.8470 23 1 -0.3634 -1.0245 -0.0805 24 1 -0.3633 0.4425 0.9275 25 1 1.6864 -0.2006 -2.1392 26 1 1.6669 -1.7454 -1.2552 27 1 3.9237 -1.2100 -0.3254 28 1 3.9433 0.2872 -1.2880 29 1 6.8181 -2.4251 -3.8304 30 1 1.2986 -2.6013 1.7398 31 1 1.6616 -2.3945 0.0035 32 1 3.3913 -3.6241 1.8018 33 1 3.9416 -2.8003 0.3078 34 1 3.7988 -1.6773 3.1638 35 1 5.1423 -1.5467 1.9803 36 1 2.9579 0.5017 3.4636 37 1 4.4451 1.1498 2.7312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:39 Heat of formation + Delta-G solvation = -40.796177 kcal Electronic energy + Delta-G solvation = -17610.272386 eV Core-core repulsion = 14916.162341 eV Total energy + Delta-G solvation = -2694.110045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.24371 -39.73222 -34.38105 -32.88841 -30.47222 -30.38445 -28.45711 -25.21508 -25.10541 -21.74065 -21.49257 -19.78453 -18.92136 -16.99221 -16.57370 -15.52346 -15.40405 -15.20969 -14.30923 -13.80453 -13.50857 -13.44104 -12.86296 -12.76587 -12.32993 -12.19201 -11.86447 -11.61862 -11.45704 -11.13233 -10.81076 -10.74623 -10.68809 -10.57095 -10.51432 -10.15468 -9.82737 -9.57924 -9.42137 -9.07940 -8.54706 -7.74144 -6.08377 -4.05396 3.21964 3.31867 3.33215 4.23417 4.39084 4.78989 4.87633 5.19143 5.25411 5.26465 5.33243 5.42069 5.53239 5.72040 5.76607 5.78301 5.89692 6.05592 6.07411 6.11624 6.20440 6.27351 6.31144 6.38643 6.49701 6.53802 6.63921 6.72984 6.95224 7.25147 7.31259 7.43702 7.59713 7.77087 8.51474 8.97378 9.54281 11.05360 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.010953 C = 0.009810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.010669 B = 2555.795634 C = 2853.599525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.079 0.921 4 C -0.137 4.137 5 C -0.036 4.036 6 C -0.516 4.516 7 H 0.070 0.930 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.265 1.265 14 N -0.512 5.512 15 C 0.030 3.970 16 C -0.146 4.146 17 C -0.121 4.121 18 C 0.011 3.989 19 H 0.100 0.900 20 C 0.080 3.920 21 F -0.217 7.217 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 2.924 12.612 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.097 0.903 4 C -0.175 4.175 5 C -0.073 4.073 6 C -0.554 4.554 7 H 0.088 0.912 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.697 3.303 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.236 5.236 15 C -0.098 4.098 16 C -0.184 4.184 17 C -0.159 4.159 18 C -0.097 4.097 19 H 0.118 0.882 20 C 0.025 3.975 21 F -0.198 7.198 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.723 3.043 12.914 14.449 hybrid contribution 1.312 0.161 -0.242 1.344 sum -4.411 3.203 12.671 13.794 Atomic orbital electron populations 1.21712 0.95093 1.01225 1.01031 1.21999 0.95021 0.98389 0.88877 0.90314 1.22234 0.98675 1.00077 0.96519 1.20150 0.91997 0.96673 0.98433 1.21149 0.92410 1.33013 1.08788 0.91219 1.25008 0.98343 0.94842 0.95137 1.69912 1.14376 1.41740 1.28209 0.86938 0.81136 0.80453 0.81812 1.20021 1.21314 1.18972 1.63632 1.19331 1.05374 1.35298 1.23013 0.96604 0.87821 1.02318 1.22921 0.96620 0.97641 1.01218 1.22612 0.99813 0.94089 0.99421 1.23776 0.91047 0.95280 0.99632 0.88207 1.22007 0.94974 0.83521 0.97046 1.92719 1.80531 1.57068 1.89471 0.92841 0.93207 0.92655 0.92492 0.91623 0.94344 0.97083 0.92778 0.91711 0.90133 0.91489 0.89012 0.91030 0.91079 0.90968 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.34 37.16 0.35 -1.61 16 2 C 0.07 1.13 2.41 -67.71 -0.16 0.97 16 3 H 0.08 1.45 6.80 -51.93 -0.35 1.10 16 4 C -0.14 -2.72 4.16 -26.73 -0.11 -2.83 16 5 C -0.04 -0.83 2.30 -27.89 -0.06 -0.90 16 6 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 7 H 0.07 2.12 7.99 -52.48 -0.42 1.71 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.23 6.54 56.52 0.37 -5.87 16 14 N -0.51 -8.45 4.65 -215.47 -1.00 -9.45 16 15 C 0.03 0.47 5.82 -2.84 -0.02 0.46 16 16 C -0.15 -2.33 6.26 -24.91 -0.16 -2.49 16 17 C -0.12 -1.79 6.28 -24.60 -0.15 -1.95 16 18 C 0.01 0.18 2.03 -66.18 -0.13 0.05 16 19 H 0.10 1.94 4.32 -51.93 -0.22 1.72 16 20 C 0.08 1.14 7.27 37.16 0.27 1.41 16 21 F -0.22 -3.60 16.00 2.25 0.04 -3.56 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.71 8.00 -51.93 -0.42 0.29 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.30 5.54 -51.93 -0.29 1.02 16 27 H 0.04 0.85 1.53 -51.93 -0.08 0.77 16 28 H 0.01 0.27 6.76 -51.93 -0.35 -0.08 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.39 4.66 -51.92 -0.24 1.14 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.77 6.58 -51.93 -0.34 1.43 16 34 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.47 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -29.83 277.42 -6.97 -36.80 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.68 Total: 2.14 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.61 Total: -19.81 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.23 Total: -36.34 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.83 -6.97 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.995 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds