Wall clock time and date at job start Sun Mar 29 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.53001 * 109.46908 * 240.00067 * 2 1 3 5 5 C 1.52999 * 109.47077 * 180.66673 * 4 2 1 6 6 C 1.50693 * 109.47233 * 177.03828 * 5 4 2 7 7 H 1.08005 * 120.00228 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00139 * 179.71990 * 6 5 4 9 9 N 1.31519 * 120.00212 * 180.27683 * 8 6 5 10 10 Si 1.86802 * 119.99810 * 0.28484 * 8 6 5 11 11 H 1.48499 * 109.47491 * 89.99312 * 10 8 6 12 12 H 1.48503 * 109.47069 * 209.99650 * 10 8 6 13 13 H 1.48502 * 109.47032 * 329.99165 * 10 8 6 14 14 N 1.46901 * 109.47099 * 120.00041 * 2 1 3 15 15 C 1.47439 * 111.00063 * 80.52208 * 14 2 1 16 16 C 1.54322 * 107.23147 * 123.25699 * 15 14 2 17 17 C 1.55135 * 103.01788 * 22.28409 * 16 15 14 18 18 C 1.47845 * 110.99771 * 201.36703 * 14 2 1 19 19 H 1.09002 * 110.37457 * 332.46612 * 18 14 2 20 20 C 1.53006 * 110.37413 * 94.80527 * 18 14 2 21 21 F 1.39902 * 109.47023 * 301.87752 * 20 18 14 22 22 H 1.09005 * 109.46990 * 55.50361 * 1 2 3 23 23 H 1.09000 * 109.47345 * 175.50579 * 1 2 3 24 24 H 1.09000 * 109.46892 * 295.50432 * 1 2 3 25 25 H 1.08998 * 109.47100 * 60.66444 * 4 2 1 26 26 H 1.09004 * 109.46831 * 300.66599 * 4 2 1 27 27 H 1.09000 * 109.46745 * 57.03745 * 5 4 2 28 28 H 1.09002 * 109.46983 * 297.04206 * 5 4 2 29 29 H 0.97002 * 119.99860 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.89088 * 242.66611 * 15 14 2 31 31 H 1.09008 * 109.88717 * 3.85219 * 15 14 2 32 32 H 1.08995 * 110.70022 * 140.66837 * 16 15 14 33 33 H 1.09004 * 110.70482 * 263.72894 * 16 15 14 34 34 H 1.08997 * 110.99071 * 82.43911 * 17 16 15 35 35 H 1.09000 * 110.99362 * 206.21554 * 17 16 15 36 36 H 1.09005 * 109.46670 * 61.87315 * 20 18 14 37 37 H 1.08996 * 109.46964 * 181.87113 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7358 -1.2409 6 6 4.0714 -1.5090 -2.4333 7 1 3.3692 -1.9459 -3.1279 8 6 5.4268 -1.6532 -2.6410 9 7 5.8645 -2.3233 -3.6845 10 14 6.6414 -0.8970 -1.4400 11 1 6.9530 -1.8766 -0.3683 12 1 7.8895 -0.5365 -2.1593 13 1 6.0472 0.3234 -0.8376 14 7 2.0197 -0.6925 1.1994 15 6 1.9822 -2.1551 1.0175 16 6 3.4132 -2.6821 1.2538 17 6 4.0604 -1.5633 2.1118 18 6 3.4082 -0.2925 1.5124 19 1 3.9300 0.0095 0.6043 20 6 3.4171 0.8444 2.5363 21 9 2.6951 1.9316 2.0323 22 1 -0.3633 0.5821 -0.8470 23 1 -0.3634 -1.0245 -0.0805 24 1 -0.3633 0.4425 0.9275 25 1 1.6864 -0.2006 -2.1392 26 1 1.6669 -1.7454 -1.2552 27 1 3.9237 -1.2100 -0.3254 28 1 3.9433 0.2872 -1.2880 29 1 6.8181 -2.4251 -3.8304 30 1 1.2986 -2.6013 1.7398 31 1 1.6616 -2.3945 0.0035 32 1 3.3913 -3.6241 1.8018 33 1 3.9416 -2.8003 0.3078 34 1 3.7988 -1.6773 3.1638 35 1 5.1423 -1.5467 1.9803 36 1 2.9579 0.5017 3.4636 37 1 4.4451 1.1498 2.7312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:39 Heat of formation + Delta-G solvation = -59.898287 kcal Electronic energy + Delta-G solvation = -17611.100716 eV Core-core repulsion = 14916.162341 eV Total energy + Delta-G solvation = -2694.938375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.41775 -41.08521 -35.88111 -34.86379 -32.26476 -31.67002 -29.71130 -27.10036 -26.26148 -23.33004 -22.89256 -21.22241 -20.35202 -18.85669 -18.12486 -16.82286 -16.59921 -16.44222 -16.30420 -15.17610 -14.92326 -14.84093 -14.55041 -14.20573 -13.87160 -13.76773 -13.29876 -13.10856 -12.90598 -12.74048 -12.25603 -12.13257 -11.98929 -11.93209 -11.81130 -11.73300 -11.49121 -11.32546 -11.07720 -10.95720 -10.63063 -9.12085 -8.32676 -6.35318 1.26493 1.30912 1.41126 2.30537 2.98609 3.02589 3.59545 3.66518 3.96454 4.09926 4.18795 4.23282 4.23807 4.35467 4.43088 4.57648 4.63681 4.70575 4.75452 4.90205 4.95344 4.96589 5.00553 5.01786 5.11325 5.21292 5.25966 5.40156 5.42228 5.49844 5.55810 5.65257 6.11290 6.21948 6.26585 6.71847 7.28319 8.84480 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.010953 C = 0.009810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.010669 B = 2555.795634 C = 2853.599525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.073 3.927 3 H 0.067 0.933 4 C -0.132 4.132 5 C -0.027 4.027 6 C -0.525 4.525 7 H 0.026 0.974 8 C 0.008 3.992 9 N -0.951 5.951 10 Si 0.935 3.065 11 H -0.253 1.253 12 H -0.286 1.286 13 H -0.250 1.250 14 N -0.506 5.506 15 C 0.029 3.971 16 C -0.149 4.149 17 C -0.115 4.115 18 C 0.002 3.998 19 H 0.065 0.935 20 C 0.079 3.921 21 F -0.233 7.233 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.061 0.939 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 3.482 15.842 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 H 0.086 0.914 4 C -0.171 4.171 5 C -0.064 4.064 6 C -0.563 4.563 7 H 0.044 0.956 8 C -0.189 4.189 9 N -0.592 5.592 10 Si 0.758 3.242 11 H -0.177 1.177 12 H -0.212 1.212 13 H -0.174 1.174 14 N -0.229 5.229 15 C -0.098 4.098 16 C -0.187 4.187 17 C -0.153 4.153 18 C -0.107 4.107 19 H 0.083 0.917 20 C 0.024 3.976 21 F -0.214 7.214 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.799 3.603 16.154 17.538 hybrid contribution 1.276 -0.074 -1.332 1.846 sum -4.523 3.529 14.823 15.894 Atomic orbital electron populations 1.21650 0.92866 1.01859 1.01971 1.21905 0.96752 0.97276 0.87682 0.91438 1.22174 0.96537 1.00432 0.97910 1.20107 0.94195 0.95026 0.97062 1.21474 0.92081 1.33114 1.09639 0.95590 1.25937 1.00528 0.95295 0.97099 1.70072 1.15001 1.43620 1.30550 0.85880 0.78081 0.80450 0.79756 1.17685 1.21220 1.17398 1.63789 1.19489 1.05540 1.34130 1.23055 0.97148 0.87667 1.01931 1.22884 0.96229 0.99657 0.99923 1.22654 0.99598 0.92178 1.00862 1.23821 0.90640 0.97061 0.99183 0.91727 1.22177 0.96427 0.82137 0.96888 1.92690 1.81049 1.57870 1.89776 0.92149 0.92699 0.91499 0.93734 0.91819 0.92143 0.98248 0.92592 0.89195 0.92108 0.88930 0.93105 0.87684 0.91030 0.88421 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.34 71.98 0.67 -2.79 16 2 C 0.07 2.43 2.41 44.92 0.11 2.54 16 3 H 0.07 2.43 6.80 -2.39 -0.02 2.41 16 4 C -0.13 -5.35 4.16 30.59 0.13 -5.22 16 5 C -0.03 -1.28 2.30 29.85 0.07 -1.22 16 6 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 7 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 8 C 0.01 0.47 5.47 84.65 0.46 0.93 16 9 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 10 Si 0.94 43.93 27.47 68.60 1.88 45.82 16 11 H -0.25 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 14 N -0.51 -15.47 4.65 -835.60 -3.89 -19.36 16 15 C 0.03 0.86 5.82 86.65 0.50 1.37 16 16 C -0.15 -4.42 6.26 31.77 0.20 -4.22 16 17 C -0.12 -2.98 6.28 31.98 0.20 -2.78 16 18 C 0.00 0.05 2.03 45.39 0.09 0.14 16 19 H 0.06 2.41 4.32 -2.39 -0.01 2.40 16 20 C 0.08 1.94 7.27 71.98 0.52 2.47 16 21 F -0.23 -7.13 16.00 44.97 0.72 -6.41 16 22 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.60 5.54 -2.38 -0.01 2.59 16 27 H 0.06 2.63 1.53 -2.39 0.00 2.63 16 28 H 0.00 -0.03 6.76 -2.39 -0.02 -0.05 16 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.05 4.66 -2.38 -0.01 2.04 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.93 6.58 -2.38 -0.02 1.91 16 34 H 0.10 2.06 8.02 -2.39 -0.02 2.04 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.94 8.09 -2.38 -0.02 1.92 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.45 277.42 3.21 -63.24 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.99 Total: 15.78 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.21 Total: -39.14 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -3.59 Total: -79.29 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.72 Total: -6.41 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -66.45 3.21 -63.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.338 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds