Wall clock time and date at job start Sun Mar 29 2020 21:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47216 * 2 1 4 4 C 1.52999 * 109.47144 * 120.00056 * 2 1 3 5 5 C 1.52999 * 109.47082 * 187.59719 * 4 2 1 6 6 C 1.50702 * 109.46877 * 186.22368 * 5 4 2 7 7 H 1.07996 * 120.00188 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99649 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00213 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99805 * 180.27326 * 8 6 5 11 11 H 1.48503 * 109.47103 * 179.72424 * 10 8 6 12 12 H 1.48505 * 109.47326 * 299.72294 * 10 8 6 13 13 H 1.48495 * 109.47108 * 59.72438 * 10 8 6 14 14 N 1.46900 * 109.47017 * 240.00279 * 2 1 3 15 15 C 1.47845 * 110.99947 * 256.54134 * 14 2 1 16 16 C 1.54910 * 104.79576 * 213.63507 * 15 14 2 17 17 C 1.55138 * 101.64988 * 37.07179 * 16 15 14 18 18 C 1.47443 * 111.00053 * 135.70251 * 14 2 1 19 19 H 1.09004 * 109.88478 * 242.66126 * 18 14 2 20 20 C 1.52999 * 109.88997 * 3.68785 * 18 14 2 21 21 F 1.39903 * 109.46907 * 286.45207 * 20 18 14 22 22 H 1.08995 * 109.47020 * 185.37561 * 1 2 3 23 23 H 1.08997 * 109.46974 * 305.38167 * 1 2 3 24 24 H 1.08997 * 109.46950 * 65.37588 * 1 2 3 25 25 H 1.09004 * 109.47022 * 67.60219 * 4 2 1 26 26 H 1.08996 * 109.47121 * 307.60231 * 4 2 1 27 27 H 1.09000 * 109.46946 * 66.22204 * 5 4 2 28 28 H 1.09003 * 109.47174 * 306.22320 * 5 4 2 29 29 H 0.96997 * 119.99983 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.37623 * 332.46846 * 15 14 2 31 31 H 1.09002 * 110.37350 * 94.80711 * 15 14 2 32 32 H 1.08992 * 110.99210 * 278.97493 * 16 15 14 33 33 H 1.09000 * 111.01865 * 155.17795 * 16 15 14 34 34 H 1.09009 * 110.70168 * 205.95938 * 17 16 15 35 35 H 1.09000 * 110.85442 * 82.80346 * 17 16 15 36 36 H 1.09001 * 109.47344 * 46.44988 * 20 18 14 37 37 H 1.08996 * 109.47484 * 166.46022 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5580 -0.5582 1.3482 6 6 4.0795 -1.3930 2.4894 7 1 3.3965 -1.9806 3.0848 8 6 5.4286 -1.4056 2.7740 9 7 6.2603 -0.6896 2.0493 10 14 6.0760 -2.4463 4.1838 11 1 7.5500 -2.2917 4.2769 12 1 5.4504 -2.0018 5.4552 13 1 5.7422 -3.8725 3.9401 14 7 2.0196 -0.6924 -1.1995 15 6 2.4991 -2.0512 -0.8682 16 6 3.6781 -2.3028 -1.8411 17 6 4.3348 -0.8988 -1.9072 18 6 3.1246 0.0552 -1.8271 19 1 2.8355 0.3723 -2.8292 20 6 3.4761 1.2770 -0.9759 21 9 2.4796 2.2483 -1.1205 22 1 -0.3633 -1.0231 0.0963 23 1 -0.3633 0.5950 0.8379 24 1 -0.3633 0.4282 -0.9342 25 1 1.7919 -1.7807 1.1838 26 1 1.5699 -0.2920 2.1340 27 1 3.8001 0.4899 1.5244 28 1 4.0202 -0.8864 0.4172 29 1 7.2094 -0.6988 2.2494 30 1 2.8445 -2.0904 0.1648 31 1 1.7084 -2.7832 -1.0328 32 1 3.3160 -2.6111 -2.8218 33 1 4.3708 -3.0392 -1.4337 34 1 4.8681 -0.7668 -2.8487 35 1 5.0046 -0.7436 -1.0614 36 1 3.5468 0.9821 0.0711 37 1 4.4319 1.6855 -1.3038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:41 Heat of formation + Delta-G solvation = -19.374929 kcal Electronic energy + Delta-G solvation = -17692.530232 eV Core-core repulsion = 14999.349082 eV Total energy + Delta-G solvation = -2693.181150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.48054 -39.66238 -34.35637 -32.90385 -30.51354 -29.93895 -28.38578 -25.18723 -24.35451 -22.05372 -21.24569 -20.49087 -18.32156 -16.90275 -16.12207 -15.81770 -15.32119 -14.63710 -14.41458 -14.11524 -13.62308 -12.85652 -12.74686 -12.45186 -12.16698 -11.89004 -11.79895 -11.38349 -11.25851 -10.92531 -10.73209 -10.72295 -10.55081 -10.40836 -10.26274 -9.92308 -9.85814 -9.56849 -9.30599 -8.88280 -8.41950 -7.62773 -6.10218 -4.11972 3.27394 3.32353 3.34984 4.38386 4.44589 4.95454 5.08022 5.17263 5.26121 5.50731 5.60505 5.63548 5.66583 5.88363 5.91145 6.05558 6.07602 6.22319 6.24422 6.34771 6.37411 6.43638 6.44710 6.53350 6.67383 6.73707 6.83068 6.87122 7.01397 7.50531 7.56024 7.60812 7.76593 7.88177 8.32807 8.92866 9.52555 11.00426 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.009235 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.897069 B = 3031.271434 C = 3135.233665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.027 3.973 3 H 0.101 0.899 4 C -0.143 4.143 5 C -0.001 4.001 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.287 1.287 12 H -0.277 1.277 13 H -0.277 1.277 14 N -0.513 5.513 15 C 0.003 3.997 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.051 3.949 19 H 0.082 0.918 20 C 0.007 3.993 21 F -0.218 7.218 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.017 0.983 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 0.313 -6.720 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 H 0.119 0.881 4 C -0.182 4.182 5 C -0.037 4.037 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.213 1.213 12 H -0.203 1.203 13 H -0.202 1.202 14 N -0.237 5.237 15 C -0.124 4.124 16 C -0.161 4.161 17 C -0.178 4.178 18 C -0.058 4.058 19 H 0.100 0.900 20 C -0.047 4.047 21 F -0.199 7.199 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.277 0.352 -7.092 8.847 hybrid contribution 1.068 -0.431 1.279 1.721 sum -4.209 -0.079 -5.813 7.177 Atomic orbital electron populations 1.21658 0.95516 1.00790 1.00542 1.22665 0.95480 1.00682 0.89248 0.88135 1.22334 0.99869 1.00009 0.95949 1.19672 0.89119 0.96538 0.98389 1.21179 0.92394 1.27372 1.14959 0.92754 1.24975 0.97069 0.95582 0.96470 1.69907 1.03299 1.40571 1.39551 0.86682 0.77700 0.80912 0.82882 1.21300 1.20293 1.20227 1.63852 1.31495 1.02248 1.26084 1.23853 0.96035 0.89983 1.02487 1.22575 0.97501 0.96800 0.99199 1.22881 0.97365 0.94694 1.02897 1.22964 0.91373 0.93128 0.98365 0.90000 1.23403 0.88368 0.86740 1.06235 1.92611 1.64380 1.65802 1.97103 0.93504 0.93283 0.93016 0.91832 0.92915 0.96534 0.93993 0.92878 0.87119 0.91749 0.92064 0.90902 0.91620 0.88787 0.85711 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.51 37.16 0.35 -1.69 16 2 C 0.03 0.49 2.36 -67.71 -0.16 0.34 16 3 H 0.10 1.93 3.27 -51.93 -0.17 1.76 16 4 C -0.14 -2.92 4.09 -26.73 -0.11 -3.03 16 5 C 0.00 -0.03 2.60 -27.88 -0.07 -0.10 16 6 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 10 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 N -0.51 -9.12 5.01 -215.44 -1.08 -10.20 16 15 C 0.00 0.05 5.27 -2.30 -0.01 0.04 16 16 C -0.12 -1.99 7.01 -24.59 -0.17 -2.16 16 17 C -0.14 -2.33 5.81 -24.91 -0.14 -2.48 16 18 C 0.05 0.86 3.45 -66.73 -0.23 0.63 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.01 0.13 5.69 37.16 0.21 0.34 16 21 F -0.22 -3.99 15.45 2.25 0.03 -3.95 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.29 6.02 -51.93 -0.31 0.98 16 26 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 27 H 0.02 0.43 6.54 -51.93 -0.34 0.09 16 28 H 0.04 0.98 2.75 -51.93 -0.14 0.84 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.11 2.26 3.12 -51.93 -0.16 2.10 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.09 1.84 6.34 -51.93 -0.33 1.52 16 36 H 0.13 2.54 2.47 -51.93 -0.13 2.41 16 37 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -27.22 272.88 -7.32 -34.53 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.35 Total: 4.68 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.75 Total: -20.81 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.34 Total: -34.50 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.03 Total: -3.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.22 -7.32 -34.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.159 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds