Wall clock time and date at job start Sun Mar 29 2020 21:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47216 * 2 1
4 4 C 1.52999 * 109.47144 * 120.00056 * 2 1 3
5 5 C 1.52999 * 109.47082 * 187.59719 * 4 2 1
6 6 C 1.50702 * 109.46877 * 186.22368 * 5 4 2
7 7 H 1.07996 * 120.00188 * 359.97438 * 6 5 4
8 8 C 1.37881 * 119.99649 * 180.02562 * 6 5 4
9 9 N 1.31515 * 120.00213 * 359.97438 * 8 6 5
10 10 Si 1.86802 * 119.99805 * 180.27326 * 8 6 5
11 11 H 1.48503 * 109.47103 * 179.72424 * 10 8 6
12 12 H 1.48505 * 109.47326 * 299.72294 * 10 8 6
13 13 H 1.48495 * 109.47108 * 59.72438 * 10 8 6
14 14 N 1.46900 * 109.47017 * 240.00279 * 2 1 3
15 15 C 1.47845 * 110.99947 * 256.54134 * 14 2 1
16 16 C 1.54910 * 104.79576 * 213.63507 * 15 14 2
17 17 C 1.55138 * 101.64988 * 37.07179 * 16 15 14
18 18 C 1.47443 * 111.00053 * 135.70251 * 14 2 1
19 19 H 1.09004 * 109.88478 * 242.66126 * 18 14 2
20 20 C 1.52999 * 109.88997 * 3.68785 * 18 14 2
21 21 F 1.39903 * 109.46907 * 286.45207 * 20 18 14
22 22 H 1.08995 * 109.47020 * 185.37561 * 1 2 3
23 23 H 1.08997 * 109.46974 * 305.38167 * 1 2 3
24 24 H 1.08997 * 109.46950 * 65.37588 * 1 2 3
25 25 H 1.09004 * 109.47022 * 67.60219 * 4 2 1
26 26 H 1.08996 * 109.47121 * 307.60231 * 4 2 1
27 27 H 1.09000 * 109.46946 * 66.22204 * 5 4 2
28 28 H 1.09003 * 109.47174 * 306.22320 * 5 4 2
29 29 H 0.96997 * 119.99983 * 180.02562 * 9 8 6
30 30 H 1.08997 * 110.37623 * 332.46846 * 15 14 2
31 31 H 1.09002 * 110.37350 * 94.80711 * 15 14 2
32 32 H 1.08992 * 110.99210 * 278.97493 * 16 15 14
33 33 H 1.09000 * 111.01865 * 155.17795 * 16 15 14
34 34 H 1.09009 * 110.70168 * 205.95938 * 17 16 15
35 35 H 1.09000 * 110.85442 * 82.80346 * 17 16 15
36 36 H 1.09001 * 109.47344 * 46.44988 * 20 18 14
37 37 H 1.08996 * 109.47484 * 166.46022 * 20 18 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5580 -0.5582 1.3482
6 6 4.0795 -1.3930 2.4894
7 1 3.3965 -1.9806 3.0848
8 6 5.4286 -1.4056 2.7740
9 7 6.2603 -0.6896 2.0493
10 14 6.0760 -2.4463 4.1838
11 1 7.5500 -2.2917 4.2769
12 1 5.4504 -2.0018 5.4552
13 1 5.7422 -3.8725 3.9401
14 7 2.0196 -0.6924 -1.1995
15 6 2.4991 -2.0512 -0.8682
16 6 3.6781 -2.3028 -1.8411
17 6 4.3348 -0.8988 -1.9072
18 6 3.1246 0.0552 -1.8271
19 1 2.8355 0.3723 -2.8292
20 6 3.4761 1.2770 -0.9759
21 9 2.4796 2.2483 -1.1205
22 1 -0.3633 -1.0231 0.0963
23 1 -0.3633 0.5950 0.8379
24 1 -0.3633 0.4282 -0.9342
25 1 1.7919 -1.7807 1.1838
26 1 1.5699 -0.2920 2.1340
27 1 3.8001 0.4899 1.5244
28 1 4.0202 -0.8864 0.4172
29 1 7.2094 -0.6988 2.2494
30 1 2.8445 -2.0904 0.1648
31 1 1.7084 -2.7832 -1.0328
32 1 3.3160 -2.6111 -2.8218
33 1 4.3708 -3.0392 -1.4337
34 1 4.8681 -0.7668 -2.8487
35 1 5.0046 -0.7436 -1.0614
36 1 3.5468 0.9821 0.0711
37 1 4.4319 1.6855 -1.3038
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172501367.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:41
Heat of formation + Delta-G solvation = -19.374929 kcal
Electronic energy + Delta-G solvation = -17692.530232 eV
Core-core repulsion = 14999.349082 eV
Total energy + Delta-G solvation = -2693.181150 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-47.48054 -39.66238 -34.35637 -32.90385 -30.51354 -29.93895 -28.38578 -25.18723
-24.35451 -22.05372 -21.24569 -20.49087 -18.32156 -16.90275 -16.12207 -15.81770
-15.32119 -14.63710 -14.41458 -14.11524 -13.62308 -12.85652 -12.74686 -12.45186
-12.16698 -11.89004 -11.79895 -11.38349 -11.25851 -10.92531 -10.73209 -10.72295
-10.55081 -10.40836 -10.26274 -9.92308 -9.85814 -9.56849 -9.30599 -8.88280
-8.41950 -7.62773 -6.10218 -4.11972 3.27394 3.32353 3.34984 4.38386
4.44589 4.95454 5.08022 5.17263 5.26121 5.50731 5.60505 5.63548
5.66583 5.88363 5.91145 6.05558 6.07602 6.22319 6.24422 6.34771
6.37411 6.43638 6.44710 6.53350 6.67383 6.73707 6.83068 6.87122
7.01397 7.50531 7.56024 7.60812 7.76593 7.88177 8.32807 8.92866
9.52555 11.00426
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.027393 B = 0.009235 C = 0.008929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.897069 B = 3031.271434 C = 3135.233665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.027 3.973
3 H 0.101 0.899
4 C -0.143 4.143
5 C -0.001 4.001
6 C -0.521 4.521
7 H 0.054 0.946
8 C 0.060 3.940
9 N -0.894 5.894
10 Si 0.890 3.110
11 H -0.287 1.287
12 H -0.277 1.277
13 H -0.277 1.277
14 N -0.513 5.513
15 C 0.003 3.997
16 C -0.123 4.123
17 C -0.140 4.140
18 C 0.051 3.949
19 H 0.082 0.918
20 C 0.007 3.993
21 F -0.218 7.218
22 H 0.046 0.954
23 H 0.048 0.952
24 H 0.051 0.949
25 H 0.063 0.937
26 H 0.052 0.948
27 H 0.017 0.983
28 H 0.042 0.958
29 H 0.262 0.738
30 H 0.111 0.889
31 H 0.064 0.936
32 H 0.061 0.939
33 H 0.072 0.928
34 H 0.065 0.935
35 H 0.094 0.906
36 H 0.126 0.874
37 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.010 0.313 -6.720 8.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.081 4.081
3 H 0.119 0.881
4 C -0.182 4.182
5 C -0.037 4.037
6 C -0.559 4.559
7 H 0.072 0.928
8 C -0.141 4.141
9 N -0.533 5.533
10 Si 0.718 3.282
11 H -0.213 1.213
12 H -0.203 1.203
13 H -0.202 1.202
14 N -0.237 5.237
15 C -0.124 4.124
16 C -0.161 4.161
17 C -0.178 4.178
18 C -0.058 4.058
19 H 0.100 0.900
20 C -0.047 4.047
21 F -0.199 7.199
22 H 0.065 0.935
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.082 0.918
26 H 0.071 0.929
27 H 0.035 0.965
28 H 0.060 0.940
29 H 0.071 0.929
30 H 0.129 0.871
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.091 0.909
34 H 0.084 0.916
35 H 0.112 0.888
36 H 0.143 0.857
37 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -5.277 0.352 -7.092 8.847
hybrid contribution 1.068 -0.431 1.279 1.721
sum -4.209 -0.079 -5.813 7.177
Atomic orbital electron populations
1.21658 0.95516 1.00790 1.00542 1.22665 0.95480 1.00682 0.89248
0.88135 1.22334 0.99869 1.00009 0.95949 1.19672 0.89119 0.96538
0.98389 1.21179 0.92394 1.27372 1.14959 0.92754 1.24975 0.97069
0.95582 0.96470 1.69907 1.03299 1.40571 1.39551 0.86682 0.77700
0.80912 0.82882 1.21300 1.20293 1.20227 1.63852 1.31495 1.02248
1.26084 1.23853 0.96035 0.89983 1.02487 1.22575 0.97501 0.96800
0.99199 1.22881 0.97365 0.94694 1.02897 1.22964 0.91373 0.93128
0.98365 0.90000 1.23403 0.88368 0.86740 1.06235 1.92611 1.64380
1.65802 1.97103 0.93504 0.93283 0.93016 0.91832 0.92915 0.96534
0.93993 0.92878 0.87119 0.91749 0.92064 0.90902 0.91620 0.88787
0.85711 0.90998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.05 9.51 37.16 0.35 -1.69 16
2 C 0.03 0.49 2.36 -67.71 -0.16 0.34 16
3 H 0.10 1.93 3.27 -51.93 -0.17 1.76 16
4 C -0.14 -2.92 4.09 -26.73 -0.11 -3.03 16
5 C 0.00 -0.03 2.60 -27.88 -0.07 -0.10 16
6 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 16
7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16
8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
9 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16
10 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16
11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
14 N -0.51 -9.12 5.01 -215.44 -1.08 -10.20 16
15 C 0.00 0.05 5.27 -2.30 -0.01 0.04 16
16 C -0.12 -1.99 7.01 -24.59 -0.17 -2.16 16
17 C -0.14 -2.33 5.81 -24.91 -0.14 -2.48 16
18 C 0.05 0.86 3.45 -66.73 -0.23 0.63 16
19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16
20 C 0.01 0.13 5.69 37.16 0.21 0.34 16
21 F -0.22 -3.99 15.45 2.25 0.03 -3.95 16
22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
25 H 0.06 1.29 6.02 -51.93 -0.31 0.98 16
26 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16
27 H 0.02 0.43 6.54 -51.93 -0.34 0.09 16
28 H 0.04 0.98 2.75 -51.93 -0.14 0.84 16
29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
30 H 0.11 2.26 3.12 -51.93 -0.16 2.10 16
31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16
35 H 0.09 1.84 6.34 -51.93 -0.33 1.52 16
36 H 0.13 2.54 2.47 -51.93 -0.13 2.41 16
37 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16
LS Contribution 272.88 15.07 4.11 4.11
Total: -1.00 -27.22 272.88 -7.32 -34.53
By element:
Atomic # 1 Polarization: 10.03 SS G_CDS: -5.35 Total: 4.68 kcal
Atomic # 6 Polarization: -20.06 SS G_CDS: -0.75 Total: -20.81 kcal
Atomic # 7 Polarization: -34.16 SS G_CDS: -0.34 Total: -34.50 kcal
Atomic # 9 Polarization: -3.99 SS G_CDS: 0.03 Total: -3.95 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -27.22 -7.32 -34.53 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172501367.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.159 kcal
(2) G-P(sol) polarization free energy of solvation -27.219 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds