Wall clock time and date at job start Sun Mar 29 2020 21:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47216 * 2 1 4 4 C 1.52999 * 109.47144 * 120.00056 * 2 1 3 5 5 C 1.52999 * 109.47082 * 187.59719 * 4 2 1 6 6 C 1.50702 * 109.46877 * 186.22368 * 5 4 2 7 7 H 1.07996 * 120.00188 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99649 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00213 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99805 * 180.27326 * 8 6 5 11 11 H 1.48503 * 109.47103 * 179.72424 * 10 8 6 12 12 H 1.48505 * 109.47326 * 299.72294 * 10 8 6 13 13 H 1.48495 * 109.47108 * 59.72438 * 10 8 6 14 14 N 1.46900 * 109.47017 * 240.00279 * 2 1 3 15 15 C 1.47845 * 110.99947 * 256.54134 * 14 2 1 16 16 C 1.54910 * 104.79576 * 213.63507 * 15 14 2 17 17 C 1.55138 * 101.64988 * 37.07179 * 16 15 14 18 18 C 1.47443 * 111.00053 * 135.70251 * 14 2 1 19 19 H 1.09004 * 109.88478 * 242.66126 * 18 14 2 20 20 C 1.52999 * 109.88997 * 3.68785 * 18 14 2 21 21 F 1.39903 * 109.46907 * 286.45207 * 20 18 14 22 22 H 1.08995 * 109.47020 * 185.37561 * 1 2 3 23 23 H 1.08997 * 109.46974 * 305.38167 * 1 2 3 24 24 H 1.08997 * 109.46950 * 65.37588 * 1 2 3 25 25 H 1.09004 * 109.47022 * 67.60219 * 4 2 1 26 26 H 1.08996 * 109.47121 * 307.60231 * 4 2 1 27 27 H 1.09000 * 109.46946 * 66.22204 * 5 4 2 28 28 H 1.09003 * 109.47174 * 306.22320 * 5 4 2 29 29 H 0.96997 * 119.99983 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.37623 * 332.46846 * 15 14 2 31 31 H 1.09002 * 110.37350 * 94.80711 * 15 14 2 32 32 H 1.08992 * 110.99210 * 278.97493 * 16 15 14 33 33 H 1.09000 * 111.01865 * 155.17795 * 16 15 14 34 34 H 1.09009 * 110.70168 * 205.95938 * 17 16 15 35 35 H 1.09000 * 110.85442 * 82.80346 * 17 16 15 36 36 H 1.09001 * 109.47344 * 46.44988 * 20 18 14 37 37 H 1.08996 * 109.47484 * 166.46022 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5580 -0.5582 1.3482 6 6 4.0795 -1.3930 2.4894 7 1 3.3965 -1.9806 3.0848 8 6 5.4286 -1.4056 2.7740 9 7 6.2603 -0.6896 2.0493 10 14 6.0760 -2.4463 4.1838 11 1 7.5500 -2.2917 4.2769 12 1 5.4504 -2.0018 5.4552 13 1 5.7422 -3.8725 3.9401 14 7 2.0196 -0.6924 -1.1995 15 6 2.4991 -2.0512 -0.8682 16 6 3.6781 -2.3028 -1.8411 17 6 4.3348 -0.8988 -1.9072 18 6 3.1246 0.0552 -1.8271 19 1 2.8355 0.3723 -2.8292 20 6 3.4761 1.2770 -0.9759 21 9 2.4796 2.2483 -1.1205 22 1 -0.3633 -1.0231 0.0963 23 1 -0.3633 0.5950 0.8379 24 1 -0.3633 0.4282 -0.9342 25 1 1.7919 -1.7807 1.1838 26 1 1.5699 -0.2920 2.1340 27 1 3.8001 0.4899 1.5244 28 1 4.0202 -0.8864 0.4172 29 1 7.2094 -0.6988 2.2494 30 1 2.8445 -2.0904 0.1648 31 1 1.7084 -2.7832 -1.0328 32 1 3.3160 -2.6111 -2.8218 33 1 4.3708 -3.0392 -1.4337 34 1 4.8681 -0.7668 -2.8487 35 1 5.0046 -0.7436 -1.0614 36 1 3.5468 0.9821 0.0711 37 1 4.4319 1.6855 -1.3038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:41 Heat of formation + Delta-G solvation = -35.132976 kcal Electronic energy + Delta-G solvation = -17693.213552 eV Core-core repulsion = 14999.349082 eV Total energy + Delta-G solvation = -2693.864470 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.93679 -41.11960 -35.96549 -34.75281 -32.03307 -31.60627 -29.74806 -27.07159 -25.78870 -23.52429 -23.01683 -21.88123 -19.79178 -18.65357 -17.84219 -17.31664 -16.79803 -16.48832 -15.93449 -15.59954 -15.08150 -14.51157 -14.33257 -13.89441 -13.63295 -13.45725 -13.30811 -13.05916 -12.89238 -12.69163 -12.36665 -12.26570 -12.03151 -11.82270 -11.76414 -11.55588 -11.37703 -11.20467 -11.06092 -10.64148 -10.47716 -9.08618 -8.17730 -6.26091 1.40069 1.40432 1.48182 2.40852 3.04809 3.15366 3.55249 3.70244 3.80557 4.11233 4.14336 4.19393 4.32235 4.42701 4.51777 4.55350 4.69554 4.77930 4.88047 4.92067 4.99624 5.04974 5.07352 5.12165 5.22385 5.26551 5.27920 5.44849 5.48374 5.57653 5.72637 5.89556 6.15189 6.26374 6.30655 6.87039 7.41414 8.91803 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.009235 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.897069 B = 3031.271434 C = 3135.233665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.030 3.970 3 H 0.091 0.909 4 C -0.132 4.132 5 C 0.007 3.993 6 C -0.541 4.541 7 H 0.050 0.950 8 C 0.013 3.987 9 N -0.921 5.921 10 Si 0.950 3.050 11 H -0.284 1.284 12 H -0.274 1.274 13 H -0.269 1.269 14 N -0.509 5.509 15 C 0.001 3.999 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.051 3.949 19 H 0.101 0.899 20 C 0.010 3.990 21 F -0.219 7.219 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.046 0.954 27 H -0.011 1.011 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -0.368 -7.581 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 H 0.109 0.891 4 C -0.171 4.171 5 C -0.029 4.029 6 C -0.579 4.579 7 H 0.069 0.931 8 C -0.186 4.186 9 N -0.561 5.561 10 Si 0.776 3.224 11 H -0.209 1.209 12 H -0.199 1.199 13 H -0.194 1.194 14 N -0.233 5.233 15 C -0.125 4.125 16 C -0.155 4.155 17 C -0.174 4.174 18 C -0.058 4.058 19 H 0.118 0.882 20 C -0.045 4.045 21 F -0.201 7.201 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.006 0.994 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.876 -0.330 -7.951 9.892 hybrid contribution 1.253 -0.194 1.545 1.998 sum -4.623 -0.524 -6.406 7.917 Atomic orbital electron populations 1.21604 0.93488 1.01439 1.01380 1.22622 0.97047 0.99769 0.88414 0.89113 1.22192 0.97484 1.00343 0.97038 1.19579 0.91462 0.94196 0.97625 1.21585 0.92789 1.27726 1.15841 0.93130 1.25721 0.97385 0.96708 0.98797 1.70018 1.03437 1.41703 1.40895 0.85727 0.77091 0.79611 0.79974 1.20938 1.19943 1.19427 1.63976 1.31653 1.02241 1.25434 1.23796 0.97093 0.90415 1.01241 1.22578 0.96647 0.96320 1.00005 1.22810 0.96837 0.95002 1.02765 1.23057 0.91383 0.92571 0.98783 0.88161 1.23294 0.88946 0.87331 1.04901 1.92606 1.64520 1.65912 1.97031 0.92965 0.92375 0.92244 0.91726 0.93491 0.99353 0.93596 0.92884 0.90126 0.90356 0.89468 0.91465 0.88862 0.92353 0.88385 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 9.51 71.98 0.68 -2.99 16 2 C 0.03 1.06 2.36 44.91 0.11 1.16 16 3 H 0.09 3.47 3.27 -2.38 -0.01 3.46 16 4 C -0.13 -5.42 4.09 30.59 0.13 -5.29 16 5 C 0.01 0.36 2.60 29.85 0.08 0.44 16 6 C -0.54 -29.46 9.09 25.60 0.23 -29.23 16 7 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 8 C 0.01 0.70 5.46 84.66 0.46 1.16 16 9 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 10 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 N -0.51 -17.31 5.01 -835.53 -4.19 -21.50 16 15 C 0.00 0.05 5.27 86.77 0.46 0.51 16 16 C -0.12 -3.59 7.01 31.98 0.22 -3.37 16 17 C -0.14 -4.34 5.81 31.77 0.18 -4.16 16 18 C 0.05 1.65 3.45 45.26 0.16 1.81 16 19 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 20 C 0.01 0.36 5.69 71.98 0.41 0.77 16 21 F -0.22 -7.86 15.45 44.97 0.69 -7.17 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.62 6.02 -2.38 -0.01 2.61 16 26 H 0.05 1.93 8.13 -2.39 -0.02 1.91 16 27 H -0.01 -0.62 6.54 -2.39 -0.02 -0.63 16 28 H 0.05 2.21 2.75 -2.39 -0.01 2.20 16 29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.08 3.29 3.12 -2.39 -0.01 3.28 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.06 2.31 6.34 -2.39 -0.02 2.29 16 36 H 0.10 4.09 2.47 -2.39 -0.01 4.08 16 37 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 Total: -1.00 -57.40 272.88 3.00 -54.41 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.06 Total: 20.47 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 3.12 Total: -39.20 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -3.90 Total: -73.63 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.69 Total: -7.17 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -57.40 3.00 -54.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.274 kcal (2) G-P(sol) polarization free energy of solvation -57.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds