Wall clock time and date at job start Sun Mar 29 2020 21:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47216 * 2 1
4 4 C 1.52999 * 109.47144 * 120.00056 * 2 1 3
5 5 C 1.52999 * 109.47082 * 187.59719 * 4 2 1
6 6 C 1.50702 * 109.46877 * 186.22368 * 5 4 2
7 7 H 1.07996 * 120.00188 * 359.97438 * 6 5 4
8 8 C 1.37881 * 119.99649 * 180.02562 * 6 5 4
9 9 N 1.31515 * 120.00213 * 359.97438 * 8 6 5
10 10 Si 1.86802 * 119.99805 * 180.27326 * 8 6 5
11 11 H 1.48503 * 109.47103 * 179.72424 * 10 8 6
12 12 H 1.48505 * 109.47326 * 299.72294 * 10 8 6
13 13 H 1.48495 * 109.47108 * 59.72438 * 10 8 6
14 14 N 1.46900 * 109.47017 * 240.00279 * 2 1 3
15 15 C 1.47845 * 110.99947 * 256.54134 * 14 2 1
16 16 C 1.54910 * 104.79576 * 213.63507 * 15 14 2
17 17 C 1.55138 * 101.64988 * 37.07179 * 16 15 14
18 18 C 1.47443 * 111.00053 * 135.70251 * 14 2 1
19 19 H 1.09004 * 109.88478 * 242.66126 * 18 14 2
20 20 C 1.52999 * 109.88997 * 3.68785 * 18 14 2
21 21 F 1.39903 * 109.46907 * 286.45207 * 20 18 14
22 22 H 1.08995 * 109.47020 * 185.37561 * 1 2 3
23 23 H 1.08997 * 109.46974 * 305.38167 * 1 2 3
24 24 H 1.08997 * 109.46950 * 65.37588 * 1 2 3
25 25 H 1.09004 * 109.47022 * 67.60219 * 4 2 1
26 26 H 1.08996 * 109.47121 * 307.60231 * 4 2 1
27 27 H 1.09000 * 109.46946 * 66.22204 * 5 4 2
28 28 H 1.09003 * 109.47174 * 306.22320 * 5 4 2
29 29 H 0.96997 * 119.99983 * 180.02562 * 9 8 6
30 30 H 1.08997 * 110.37623 * 332.46846 * 15 14 2
31 31 H 1.09002 * 110.37350 * 94.80711 * 15 14 2
32 32 H 1.08992 * 110.99210 * 278.97493 * 16 15 14
33 33 H 1.09000 * 111.01865 * 155.17795 * 16 15 14
34 34 H 1.09009 * 110.70168 * 205.95938 * 17 16 15
35 35 H 1.09000 * 110.85442 * 82.80346 * 17 16 15
36 36 H 1.09001 * 109.47344 * 46.44988 * 20 18 14
37 37 H 1.08996 * 109.47484 * 166.46022 * 20 18 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5580 -0.5582 1.3482
6 6 4.0795 -1.3930 2.4894
7 1 3.3965 -1.9806 3.0848
8 6 5.4286 -1.4056 2.7740
9 7 6.2603 -0.6896 2.0493
10 14 6.0760 -2.4463 4.1838
11 1 7.5500 -2.2917 4.2769
12 1 5.4504 -2.0018 5.4552
13 1 5.7422 -3.8725 3.9401
14 7 2.0196 -0.6924 -1.1995
15 6 2.4991 -2.0512 -0.8682
16 6 3.6781 -2.3028 -1.8411
17 6 4.3348 -0.8988 -1.9072
18 6 3.1246 0.0552 -1.8271
19 1 2.8355 0.3723 -2.8292
20 6 3.4761 1.2770 -0.9759
21 9 2.4796 2.2483 -1.1205
22 1 -0.3633 -1.0231 0.0963
23 1 -0.3633 0.5950 0.8379
24 1 -0.3633 0.4282 -0.9342
25 1 1.7919 -1.7807 1.1838
26 1 1.5699 -0.2920 2.1340
27 1 3.8001 0.4899 1.5244
28 1 4.0202 -0.8864 0.4172
29 1 7.2094 -0.6988 2.2494
30 1 2.8445 -2.0904 0.1648
31 1 1.7084 -2.7832 -1.0328
32 1 3.3160 -2.6111 -2.8218
33 1 4.3708 -3.0392 -1.4337
34 1 4.8681 -0.7668 -2.8487
35 1 5.0046 -0.7436 -1.0614
36 1 3.5468 0.9821 0.0711
37 1 4.4319 1.6855 -1.3038
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172501367.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:41
Heat of formation + Delta-G solvation = -35.132976 kcal
Electronic energy + Delta-G solvation = -17693.213552 eV
Core-core repulsion = 14999.349082 eV
Total energy + Delta-G solvation = -2693.864470 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-48.93679 -41.11960 -35.96549 -34.75281 -32.03307 -31.60627 -29.74806 -27.07159
-25.78870 -23.52429 -23.01683 -21.88123 -19.79178 -18.65357 -17.84219 -17.31664
-16.79803 -16.48832 -15.93449 -15.59954 -15.08150 -14.51157 -14.33257 -13.89441
-13.63295 -13.45725 -13.30811 -13.05916 -12.89238 -12.69163 -12.36665 -12.26570
-12.03151 -11.82270 -11.76414 -11.55588 -11.37703 -11.20467 -11.06092 -10.64148
-10.47716 -9.08618 -8.17730 -6.26091 1.40069 1.40432 1.48182 2.40852
3.04809 3.15366 3.55249 3.70244 3.80557 4.11233 4.14336 4.19393
4.32235 4.42701 4.51777 4.55350 4.69554 4.77930 4.88047 4.92067
4.99624 5.04974 5.07352 5.12165 5.22385 5.26551 5.27920 5.44849
5.48374 5.57653 5.72637 5.89556 6.15189 6.26374 6.30655 6.87039
7.41414 8.91803
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.027393 B = 0.009235 C = 0.008929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.897069 B = 3031.271434 C = 3135.233665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.030 3.970
3 H 0.091 0.909
4 C -0.132 4.132
5 C 0.007 3.993
6 C -0.541 4.541
7 H 0.050 0.950
8 C 0.013 3.987
9 N -0.921 5.921
10 Si 0.950 3.050
11 H -0.284 1.284
12 H -0.274 1.274
13 H -0.269 1.269
14 N -0.509 5.509
15 C 0.001 3.999
16 C -0.118 4.118
17 C -0.136 4.136
18 C 0.051 3.949
19 H 0.101 0.899
20 C 0.010 3.990
21 F -0.219 7.219
22 H 0.051 0.949
23 H 0.057 0.943
24 H 0.058 0.942
25 H 0.064 0.936
26 H 0.046 0.954
27 H -0.011 1.011
28 H 0.046 0.954
29 H 0.262 0.738
30 H 0.081 0.919
31 H 0.078 0.922
32 H 0.087 0.913
33 H 0.067 0.933
34 H 0.093 0.907
35 H 0.058 0.942
36 H 0.099 0.901
37 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.597 -0.368 -7.581 9.430
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.079 4.079
3 H 0.109 0.891
4 C -0.171 4.171
5 C -0.029 4.029
6 C -0.579 4.579
7 H 0.069 0.931
8 C -0.186 4.186
9 N -0.561 5.561
10 Si 0.776 3.224
11 H -0.209 1.209
12 H -0.199 1.199
13 H -0.194 1.194
14 N -0.233 5.233
15 C -0.125 4.125
16 C -0.155 4.155
17 C -0.174 4.174
18 C -0.058 4.058
19 H 0.118 0.882
20 C -0.045 4.045
21 F -0.201 7.201
22 H 0.070 0.930
23 H 0.076 0.924
24 H 0.078 0.922
25 H 0.083 0.917
26 H 0.065 0.935
27 H 0.006 0.994
28 H 0.064 0.936
29 H 0.071 0.929
30 H 0.099 0.901
31 H 0.096 0.904
32 H 0.105 0.895
33 H 0.085 0.915
34 H 0.111 0.889
35 H 0.076 0.924
36 H 0.116 0.884
37 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -5.876 -0.330 -7.951 9.892
hybrid contribution 1.253 -0.194 1.545 1.998
sum -4.623 -0.524 -6.406 7.917
Atomic orbital electron populations
1.21604 0.93488 1.01439 1.01380 1.22622 0.97047 0.99769 0.88414
0.89113 1.22192 0.97484 1.00343 0.97038 1.19579 0.91462 0.94196
0.97625 1.21585 0.92789 1.27726 1.15841 0.93130 1.25721 0.97385
0.96708 0.98797 1.70018 1.03437 1.41703 1.40895 0.85727 0.77091
0.79611 0.79974 1.20938 1.19943 1.19427 1.63976 1.31653 1.02241
1.25434 1.23796 0.97093 0.90415 1.01241 1.22578 0.96647 0.96320
1.00005 1.22810 0.96837 0.95002 1.02765 1.23057 0.91383 0.92571
0.98783 0.88161 1.23294 0.88946 0.87331 1.04901 1.92606 1.64520
1.65912 1.97031 0.92965 0.92375 0.92244 0.91726 0.93491 0.99353
0.93596 0.92884 0.90126 0.90356 0.89468 0.91465 0.88862 0.92353
0.88385 0.89805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.68 9.51 71.98 0.68 -2.99 16
2 C 0.03 1.06 2.36 44.91 0.11 1.16 16
3 H 0.09 3.47 3.27 -2.38 -0.01 3.46 16
4 C -0.13 -5.42 4.09 30.59 0.13 -5.29 16
5 C 0.01 0.36 2.60 29.85 0.08 0.44 16
6 C -0.54 -29.46 9.09 25.60 0.23 -29.23 16
7 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16
8 C 0.01 0.70 5.46 84.66 0.46 1.16 16
9 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16
10 Si 0.95 43.09 29.54 68.60 2.03 45.12 16
11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
14 N -0.51 -17.31 5.01 -835.53 -4.19 -21.50 16
15 C 0.00 0.05 5.27 86.77 0.46 0.51 16
16 C -0.12 -3.59 7.01 31.98 0.22 -3.37 16
17 C -0.14 -4.34 5.81 31.77 0.18 -4.16 16
18 C 0.05 1.65 3.45 45.26 0.16 1.81 16
19 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16
20 C 0.01 0.36 5.69 71.98 0.41 0.77 16
21 F -0.22 -7.86 15.45 44.97 0.69 -7.17 16
22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
25 H 0.06 2.62 6.02 -2.38 -0.01 2.61 16
26 H 0.05 1.93 8.13 -2.39 -0.02 1.91 16
27 H -0.01 -0.62 6.54 -2.39 -0.02 -0.63 16
28 H 0.05 2.21 2.75 -2.39 -0.01 2.20 16
29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16
30 H 0.08 3.29 3.12 -2.39 -0.01 3.28 16
31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16
32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16
34 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16
35 H 0.06 2.31 6.34 -2.39 -0.02 2.29 16
36 H 0.10 4.09 2.47 -2.39 -0.01 4.08 16
37 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16
Total: -1.00 -57.40 272.88 3.00 -54.41
By element:
Atomic # 1 Polarization: 19.41 SS G_CDS: 1.06 Total: 20.47 kcal
Atomic # 6 Polarization: -42.32 SS G_CDS: 3.12 Total: -39.20 kcal
Atomic # 7 Polarization: -69.73 SS G_CDS: -3.90 Total: -73.63 kcal
Atomic # 9 Polarization: -7.86 SS G_CDS: 0.69 Total: -7.17 kcal
Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal
Total: -57.40 3.00 -54.41 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172501367.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.274 kcal
(2) G-P(sol) polarization free energy of solvation -57.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.407 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds