Wall clock time and date at job start Sun Mar 29 2020 21:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47570 * 2 1 4 4 C 1.53004 * 109.46879 * 119.99855 * 2 1 3 5 5 C 1.52993 * 109.47197 * 297.29136 * 4 2 1 6 6 C 1.50697 * 109.47338 * 184.57455 * 5 4 2 7 7 H 1.08003 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00105 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99766 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99779 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47485 * 59.99533 * 10 8 6 12 12 H 1.48500 * 109.46956 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47089 * 299.99517 * 10 8 6 14 14 N 1.46900 * 109.47269 * 239.99340 * 2 1 3 15 15 C 1.46842 * 111.00044 * 186.49158 * 14 2 1 16 16 C 1.53040 * 109.52119 * 174.16316 * 15 14 2 17 17 C 1.53126 * 109.27725 * 59.18352 * 16 15 14 18 18 C 1.53118 * 109.14710 * 302.33568 * 17 16 15 19 19 H 1.08994 * 109.51477 * 297.72017 * 18 17 16 20 20 F 1.39906 * 109.48790 * 177.60896 * 18 17 16 21 21 C 1.46854 * 110.99618 * 62.28493 * 14 2 1 22 22 H 1.09003 * 109.47178 * 300.00224 * 1 2 3 23 23 H 1.08997 * 109.47117 * 60.00424 * 1 2 3 24 24 H 1.09003 * 109.47489 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47182 * 57.29372 * 4 2 1 26 26 H 1.09002 * 109.46783 * 177.29476 * 4 2 1 27 27 H 1.09007 * 109.47569 * 304.57340 * 5 4 2 28 28 H 1.09001 * 109.47525 * 64.57038 * 5 4 2 29 29 H 0.97002 * 119.99724 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.46627 * 294.17520 * 15 14 2 31 31 H 1.09000 * 109.46526 * 54.14885 * 15 14 2 32 32 H 1.09003 * 109.49997 * 179.11814 * 16 15 14 33 33 H 1.08992 * 109.50610 * 299.20104 * 16 15 14 34 34 H 1.08997 * 109.52363 * 62.25158 * 17 16 15 35 35 H 1.08999 * 109.52133 * 182.37619 * 17 16 15 36 36 H 1.08998 * 109.46240 * 305.85236 * 21 14 2 37 37 H 1.08994 * 109.45911 * 65.83161 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5863 0.0383 2.4975 6 6 2.1814 -0.6072 3.7223 7 1 2.8191 -1.4730 3.6207 8 6 1.9110 -0.0932 4.9729 9 7 1.1342 0.9606 5.0967 10 14 2.6482 -0.8939 6.4911 11 1 4.1299 -0.8565 6.4005 12 1 2.2080 -0.1566 7.7026 13 1 2.1930 -2.3048 6.5771 14 7 2.0196 -0.6926 -1.1993 15 6 3.4792 -0.8479 -1.1583 16 6 3.9368 -1.6974 -2.3462 17 6 3.5140 -1.0135 -3.6494 18 6 1.9951 -0.8203 -3.6453 19 1 1.5045 -1.7928 -3.6064 20 9 1.6072 -0.1469 -4.8087 21 6 1.5939 0.0040 -2.4200 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6375 -1.7339 1.2739 26 1 3.1288 -0.7634 1.2254 27 1 1.9203 1.0740 2.4341 28 1 0.4987 0.0108 2.5645 29 1 0.9442 1.3225 5.9765 30 1 3.9506 0.1336 -1.2108 31 1 3.7662 -1.3392 -0.2285 32 1 5.0218 -1.7994 -2.3241 33 1 3.4772 -2.6839 -2.2865 34 1 4.0047 -0.0434 -3.7274 35 1 3.8007 -1.6359 -4.4970 36 1 0.5115 0.1315 -2.4066 37 1 2.0741 0.9814 -2.4665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:44 Heat of formation + Delta-G solvation = -88.798348 kcal Electronic energy + Delta-G solvation = -16449.276297 eV Core-core repulsion = 13753.084721 eV Total energy + Delta-G solvation = -2696.191576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.64917 -40.21179 -36.68938 -34.89412 -32.66502 -31.36603 -30.04667 -27.14865 -25.49765 -23.90287 -23.08201 -21.12839 -20.70994 -18.60327 -17.43582 -17.07463 -16.57492 -16.19735 -16.02650 -15.86929 -15.28424 -14.84702 -14.38531 -14.21085 -14.01368 -13.68623 -13.53575 -13.27369 -12.85969 -12.70349 -12.50379 -12.44647 -12.21508 -11.96747 -11.83825 -11.51931 -11.39478 -11.31501 -11.05690 -10.95101 -10.51340 -9.35161 -8.18725 -6.29387 1.40683 1.43477 1.51371 2.41534 2.73199 3.14622 3.55412 3.65397 3.70850 3.94760 4.04300 4.12883 4.20699 4.36853 4.44085 4.51242 4.64091 4.70757 4.78345 4.86635 4.90679 4.96737 4.97459 5.04139 5.07814 5.16279 5.25497 5.35700 5.40392 5.52972 5.78039 5.87129 6.05655 6.14010 6.28698 6.87613 7.39641 8.92877 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.050812 B = 0.005170 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.918070 B = 5414.688071 C = 5828.600282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.023 0.977 4 C -0.089 4.089 5 C 0.028 3.972 6 C -0.543 4.543 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.267 1.267 14 N -0.529 5.529 15 C 0.038 3.962 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.095 3.905 19 H 0.102 0.898 20 F -0.224 7.224 21 C 0.027 3.973 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.054 0.946 27 H -0.015 1.015 28 H 0.000 1.000 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -4.644 -16.549 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 H 0.041 0.959 4 C -0.127 4.127 5 C -0.009 4.009 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.254 5.254 15 C -0.089 4.089 16 C -0.142 4.142 17 C -0.179 4.179 18 C 0.059 3.941 19 H 0.119 0.881 20 F -0.205 7.205 21 C -0.102 4.102 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.003 0.997 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.476 -4.977 -16.467 17.551 hybrid contribution 0.411 1.005 1.083 1.533 sum 3.887 -3.972 -15.385 16.358 Atomic orbital electron populations 1.21817 0.93893 1.02432 1.01327 1.21549 0.96205 0.94576 0.89457 0.95857 1.21544 0.99577 0.98886 0.92666 1.19000 0.95380 0.94081 0.92451 1.21679 1.29954 1.13850 0.92624 0.92290 1.25953 0.95585 0.95531 1.02626 1.70089 1.38410 1.24367 1.24507 0.85534 0.79012 0.78719 0.77996 1.19218 1.20904 1.19145 1.61907 1.12289 1.50301 1.00933 1.22359 0.86843 0.99122 1.00591 1.21498 1.01968 0.99163 0.91612 1.22163 0.93488 1.02440 0.99800 1.21611 0.97000 0.95752 0.79776 0.88054 1.92779 1.92809 1.83289 1.51605 1.22668 1.02175 0.95440 0.89883 0.93313 0.91534 0.91812 0.92628 0.92770 0.99684 0.98150 0.92829 0.95454 0.90184 0.88984 0.90285 0.91422 0.88923 0.89267 0.94751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.74 71.98 0.63 -3.86 16 2 C 0.09 3.11 2.17 44.91 0.10 3.21 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.09 -3.66 4.31 30.59 0.13 -3.53 16 5 C 0.03 1.50 4.56 29.84 0.14 1.63 16 6 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.04 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 10 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 N -0.53 -15.01 4.52 -871.13 -3.94 -18.95 16 15 C 0.04 0.99 5.08 86.33 0.44 1.43 16 16 C -0.10 -1.95 6.09 30.65 0.19 -1.77 16 17 C -0.14 -2.52 5.74 30.68 0.18 -2.35 16 18 C 0.10 2.00 4.04 30.64 0.12 2.13 16 19 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 20 F -0.22 -5.37 17.09 44.97 0.77 -4.60 16 21 C 0.03 0.67 4.99 86.32 0.43 1.10 16 22 H 0.05 1.81 6.60 -2.39 -0.02 1.79 16 23 H 0.07 1.84 6.33 -2.39 -0.02 1.82 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 2.18 6.04 -2.39 -0.01 2.16 16 27 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 28 H 0.00 0.01 6.74 -2.39 -0.02 -0.01 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 2.26 5.80 -2.39 -0.01 2.24 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 2.18 6.08 -2.39 -0.01 2.17 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -62.79 289.25 3.21 -59.58 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.02 Total: 6.68 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.05 Total: -32.26 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -3.66 Total: -75.68 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.77 Total: -4.60 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.79 3.21 -59.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.220 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds