Wall clock time and date at job start Sun Mar 29 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00111 * 2 1 4 4 C 1.52998 * 109.47343 * 66.04245 * 3 2 1 5 5 F 1.39891 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.46898 * 110.99873 * 236.04521 * 2 1 3 7 7 C 1.52999 * 109.47548 * 58.95499 * 6 2 1 8 8 C 1.52997 * 109.47317 * 179.97438 * 7 6 2 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 C 1.50696 * 109.47264 * 60.00033 * 9 8 7 11 11 H 1.07998 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99662 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00409 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47285 * 60.00175 * 14 12 10 16 16 H 1.48508 * 109.47183 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47086 * 299.99815 * 14 12 10 18 18 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 9 8 20 20 H 1.09008 * 109.46689 * 183.95707 * 1 2 3 21 21 H 1.09003 * 109.47283 * 303.95381 * 1 2 3 22 22 H 1.08994 * 109.47461 * 63.95735 * 1 2 3 23 23 H 1.08994 * 109.47469 * 186.04794 * 3 2 1 24 24 H 1.09002 * 109.46862 * 306.04638 * 3 2 1 25 25 H 1.09004 * 109.47214 * 300.00654 * 4 3 2 26 26 H 1.09002 * 109.46821 * 60.00368 * 4 3 2 27 27 H 1.09002 * 109.47032 * 178.95207 * 6 2 1 28 28 H 1.08996 * 109.46929 * 59.99097 * 7 6 2 29 29 H 1.09002 * 109.46716 * 299.99902 * 7 6 2 30 30 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 31 31 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 0.96998 * 120.00365 * 179.97438 * 13 12 10 34 34 H 1.08993 * 109.47662 * 180.02562 * 18 9 8 35 35 H 1.09002 * 109.47075 * 300.00932 * 18 9 8 36 36 H 1.09002 * 109.47153 * 60.00231 * 19 18 9 37 37 H 1.09001 * 109.47289 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 9 2.1323 3.3637 1.3180 6 6 1.9954 -0.7660 -1.1376 7 6 1.4837 -0.1558 -2.4440 8 6 2.0325 -0.9532 -3.6287 9 6 1.5639 -2.4061 -3.5265 10 6 0.0577 -2.4506 -3.5456 11 1 -0.5087 -1.5342 -3.6225 12 6 -0.5973 -3.6611 -3.4638 13 7 0.0924 -4.7769 -3.3697 14 14 -2.4643 -3.7162 -3.4868 15 1 -2.9615 -3.1243 -4.7546 16 1 -2.9192 -5.1263 -3.3864 17 1 -2.9965 -2.9419 -2.3368 18 6 2.0757 -3.0164 -2.2202 19 6 1.5269 -2.2189 -1.0354 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8524 22 1 -0.3634 0.4511 -0.9232 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 0.5471 2.0845 1.4265 26 1 2.0658 1.5016 2.1491 27 1 3.0849 -0.7342 -1.1240 28 1 1.8179 0.8791 -2.5169 29 1 0.3943 -0.1876 -2.4575 30 1 3.1220 -0.9210 -3.6150 31 1 1.6676 -0.5187 -4.5594 32 1 1.9553 -2.9743 -4.3704 33 1 -0.3684 -5.6285 -3.3118 34 1 1.7422 -4.0515 -2.1475 35 1 3.1651 -2.9841 -2.2064 36 1 0.4374 -2.2511 -1.0492 37 1 1.8918 -2.6534 -0.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:33 Heat of formation + Delta-G solvation = -66.067043 kcal Electronic energy + Delta-G solvation = -17077.208451 eV Core-core repulsion = 14382.002579 eV Total energy + Delta-G solvation = -2695.205872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.59757 -38.96415 -35.70877 -32.26760 -30.29008 -29.42646 -28.03880 -25.72863 -24.53257 -22.29681 -21.20557 -19.82727 -18.51059 -16.37848 -16.22753 -15.73021 -15.35523 -14.74184 -14.46589 -14.10317 -13.78657 -13.46441 -13.19419 -12.70879 -12.11217 -11.73898 -11.55965 -11.49160 -11.33719 -11.04346 -10.90433 -10.77443 -10.59469 -10.53831 -10.22824 -10.04772 -9.54782 -9.26736 -8.90159 -8.64904 -8.27226 -7.89015 -5.96441 -4.01020 3.29587 3.35597 3.37492 4.08331 4.43625 4.77393 4.90827 5.02066 5.33767 5.40755 5.54429 5.61839 5.66085 5.73588 5.92780 5.98343 6.03129 6.23226 6.32000 6.46216 6.50469 6.60890 6.70046 6.77280 6.84520 7.04313 7.13146 7.31250 7.42638 7.53007 7.60143 7.75149 7.95614 8.17628 8.49343 9.00956 9.61953 11.09375 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.007376 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.824560 B = 3795.076451 C = 4122.773809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.535 5.535 3 C 0.022 3.978 4 C 0.063 3.937 5 F -0.222 7.222 6 C 0.092 3.908 7 C -0.138 4.138 8 C -0.103 4.103 9 C 0.043 3.957 10 C -0.501 4.501 11 H 0.052 0.948 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.883 3.117 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.107 4.107 19 C -0.091 4.091 20 H 0.080 0.920 21 H 0.057 0.943 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.259 0.741 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 8.867 6.809 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.258 5.258 3 C -0.107 4.107 4 C 0.007 3.993 5 F -0.204 7.204 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.141 4.141 9 C 0.025 3.975 10 C -0.539 4.539 11 H 0.070 0.930 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.711 3.289 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.146 4.146 19 C -0.129 4.129 20 H 0.098 0.902 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.091 0.909 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.413 8.466 7.271 11.418 hybrid contribution -1.342 0.392 -0.798 1.610 sum 1.071 8.859 6.473 11.024 Atomic orbital electron populations 1.22539 0.87753 1.03237 0.99919 1.62265 1.08117 1.11119 1.44309 1.22590 1.01381 0.90660 0.96095 1.22007 0.99566 0.77905 0.99794 1.92734 1.89829 1.39957 1.97848 1.21793 0.98191 0.94782 0.86802 1.22069 1.02348 0.96892 0.96350 1.21494 0.97372 0.99106 0.96121 1.18695 0.95526 0.89397 0.93914 1.21075 0.91213 0.92127 1.49516 0.92994 1.24923 0.97569 0.95869 0.95500 1.69849 1.34850 0.97542 1.50681 0.86812 0.86663 0.76926 0.78508 1.20474 1.21367 1.20385 1.21515 0.95173 1.02478 0.95414 1.21427 1.02089 0.91686 0.97679 0.90175 0.92480 0.94729 0.90133 0.93691 0.90892 0.90066 0.91366 0.94731 0.90753 0.94846 0.93728 0.95810 0.93072 0.88936 0.96752 0.90868 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.62 60.07 0.52 0.72 16 2 N -0.54 -8.30 4.75 -234.89 -1.12 -9.42 16 3 C 0.02 0.29 4.85 -3.83 -0.02 0.28 16 4 C 0.06 0.73 7.48 37.16 0.28 1.01 16 5 F -0.22 -2.97 17.36 2.25 0.04 -2.93 16 6 C 0.09 1.63 2.22 -67.71 -0.15 1.48 16 7 C -0.14 -2.56 4.28 -26.73 -0.11 -2.68 16 8 C -0.10 -2.11 5.41 -26.73 -0.14 -2.25 16 9 C 0.04 1.04 2.59 -91.77 -0.24 0.80 16 10 C -0.50 -13.03 6.61 -34.44 -0.23 -13.26 16 11 H 0.05 1.35 6.71 -52.49 -0.35 1.00 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 14 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.11 -2.46 5.24 -26.73 -0.14 -2.60 16 19 C -0.09 -1.86 4.78 -26.73 -0.13 -1.98 16 20 H 0.08 1.32 6.33 -51.92 -0.33 0.99 16 21 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 22 H 0.03 0.55 6.28 -51.93 -0.33 0.22 16 23 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 24 H 0.04 0.63 6.94 -51.93 -0.36 0.27 16 25 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 28 H 0.03 0.58 6.75 -51.93 -0.35 0.23 16 29 H 0.07 1.50 4.86 -51.93 -0.25 1.25 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 1.63 5.50 -51.93 -0.29 1.35 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -26.68 277.08 -7.49 -34.18 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.74 Total: -0.73 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.46 Total: -16.90 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: -0.49 Total: -33.55 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.68 -7.49 -34.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.892 kcal (2) G-P(sol) polarization free energy of solvation -26.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds