Wall clock time and date at job start Sun Mar 29 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00111 * 2 1 4 4 C 1.52998 * 109.47343 * 66.04245 * 3 2 1 5 5 F 1.39891 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.46898 * 110.99873 * 236.04521 * 2 1 3 7 7 C 1.52999 * 109.47548 * 58.95499 * 6 2 1 8 8 C 1.52997 * 109.47317 * 179.97438 * 7 6 2 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 C 1.50696 * 109.47264 * 60.00033 * 9 8 7 11 11 H 1.07998 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99662 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00409 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47285 * 60.00175 * 14 12 10 16 16 H 1.48508 * 109.47183 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47086 * 299.99815 * 14 12 10 18 18 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 9 8 20 20 H 1.09008 * 109.46689 * 183.95707 * 1 2 3 21 21 H 1.09003 * 109.47283 * 303.95381 * 1 2 3 22 22 H 1.08994 * 109.47461 * 63.95735 * 1 2 3 23 23 H 1.08994 * 109.47469 * 186.04794 * 3 2 1 24 24 H 1.09002 * 109.46862 * 306.04638 * 3 2 1 25 25 H 1.09004 * 109.47214 * 300.00654 * 4 3 2 26 26 H 1.09002 * 109.46821 * 60.00368 * 4 3 2 27 27 H 1.09002 * 109.47032 * 178.95207 * 6 2 1 28 28 H 1.08996 * 109.46929 * 59.99097 * 7 6 2 29 29 H 1.09002 * 109.46716 * 299.99902 * 7 6 2 30 30 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 31 31 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 0.96998 * 120.00365 * 179.97438 * 13 12 10 34 34 H 1.08993 * 109.47662 * 180.02562 * 18 9 8 35 35 H 1.09002 * 109.47075 * 300.00932 * 18 9 8 36 36 H 1.09002 * 109.47153 * 60.00231 * 19 18 9 37 37 H 1.09001 * 109.47289 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 9 2.1323 3.3637 1.3180 6 6 1.9954 -0.7660 -1.1376 7 6 1.4837 -0.1558 -2.4440 8 6 2.0325 -0.9532 -3.6287 9 6 1.5639 -2.4061 -3.5265 10 6 0.0577 -2.4506 -3.5456 11 1 -0.5087 -1.5342 -3.6225 12 6 -0.5973 -3.6611 -3.4638 13 7 0.0924 -4.7769 -3.3697 14 14 -2.4643 -3.7162 -3.4868 15 1 -2.9615 -3.1243 -4.7546 16 1 -2.9192 -5.1263 -3.3864 17 1 -2.9965 -2.9419 -2.3368 18 6 2.0757 -3.0164 -2.2202 19 6 1.5269 -2.2189 -1.0354 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8524 22 1 -0.3634 0.4511 -0.9232 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 0.5471 2.0845 1.4265 26 1 2.0658 1.5016 2.1491 27 1 3.0849 -0.7342 -1.1240 28 1 1.8179 0.8791 -2.5169 29 1 0.3943 -0.1876 -2.4575 30 1 3.1220 -0.9210 -3.6150 31 1 1.6676 -0.5187 -4.5594 32 1 1.9553 -2.9743 -4.3704 33 1 -0.3684 -5.6285 -3.3118 34 1 1.7422 -4.0515 -2.1475 35 1 3.1651 -2.9841 -2.2064 36 1 0.4374 -2.2511 -1.0492 37 1 1.8918 -2.6534 -0.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:33 Heat of formation + Delta-G solvation = -81.136799 kcal Electronic energy + Delta-G solvation = -17077.861925 eV Core-core repulsion = 14382.002579 eV Total energy + Delta-G solvation = -2695.859346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.56830 -40.43971 -37.25346 -34.16561 -31.75247 -31.01786 -29.44267 -27.19460 -26.27810 -23.68262 -22.71148 -21.35795 -20.20587 -17.78561 -17.44905 -17.13412 -16.76936 -16.42097 -15.76240 -15.46078 -15.18679 -14.97786 -14.64383 -14.46417 -13.52962 -13.25785 -13.15118 -12.97802 -12.82247 -12.68196 -12.60786 -12.43804 -12.12418 -11.87980 -11.68053 -11.54470 -11.32815 -11.00219 -10.67759 -10.53537 -10.27818 -9.17952 -8.01757 -6.11952 1.41460 1.42621 1.48944 2.45931 2.87379 3.26297 3.78015 3.93216 4.01186 4.09650 4.15829 4.38871 4.44452 4.52851 4.62135 4.71792 4.75717 4.79954 4.87625 4.95252 4.99974 5.04277 5.07898 5.15341 5.21598 5.41239 5.49382 5.67621 5.70042 5.75285 5.91489 6.14140 6.18185 6.27482 6.47442 6.97449 7.53734 9.02808 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.007376 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.824560 B = 3795.076451 C = 4122.773809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.533 5.533 3 C 0.022 3.978 4 C 0.067 3.933 5 F -0.231 7.231 6 C 0.100 3.900 7 C -0.129 4.129 8 C -0.099 4.099 9 C 0.038 3.962 10 C -0.504 4.504 11 H 0.050 0.950 12 C 0.016 3.984 13 N -0.918 5.918 14 Si 0.938 3.062 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.269 1.269 18 C -0.103 4.103 19 C -0.081 4.081 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.026 0.974 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.041 0.959 32 H -0.013 1.013 33 H 0.257 0.743 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.050 0.950 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 10.610 7.964 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.256 5.256 3 C -0.107 4.107 4 C 0.012 3.988 5 F -0.212 7.212 6 C -0.008 4.008 7 C -0.168 4.168 8 C -0.137 4.137 9 C 0.019 3.981 10 C -0.543 4.543 11 H 0.068 0.932 12 C -0.182 4.182 13 N -0.558 5.558 14 Si 0.765 3.235 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.194 1.194 18 C -0.142 4.142 19 C -0.119 4.119 20 H 0.079 0.921 21 H 0.105 0.895 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.005 0.995 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.299 10.228 8.430 13.453 hybrid contribution -1.273 -0.153 -1.181 1.744 sum 1.026 10.075 7.249 12.454 Atomic orbital electron populations 1.22550 0.87488 1.02512 1.00843 1.62202 1.08327 1.12342 1.42728 1.22636 1.01577 0.89278 0.97176 1.22016 1.00444 0.77301 0.99035 1.92723 1.90030 1.40630 1.97821 1.21593 0.98623 0.93259 0.87323 1.21970 1.01138 0.97861 0.95816 1.21405 0.98452 0.96742 0.97076 1.18695 0.94691 0.91546 0.93152 1.21309 0.92330 0.91941 1.48673 0.93183 1.25590 1.01396 0.95706 0.95526 1.69996 1.36206 0.97850 1.51766 0.85922 0.82148 0.76792 0.78686 1.20213 1.21465 1.19445 1.21370 0.95892 1.00920 0.95982 1.21248 1.00479 0.93496 0.96673 0.92090 0.89469 0.95578 0.89666 0.93990 0.89568 0.88792 0.90407 0.92383 0.92504 0.93152 0.94012 0.99483 0.93368 0.92313 0.95466 0.93104 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 8.62 127.69 1.10 1.49 16 2 N -0.53 -15.12 4.75 -897.04 -4.26 -19.38 16 3 C 0.02 0.52 4.85 86.30 0.42 0.94 16 4 C 0.07 1.34 7.48 71.98 0.54 1.88 16 5 F -0.23 -5.46 17.36 44.97 0.78 -4.68 16 6 C 0.10 3.36 2.22 44.92 0.10 3.46 16 7 C -0.13 -4.56 4.28 30.59 0.13 -4.43 16 8 C -0.10 -3.94 5.41 30.59 0.17 -3.78 16 9 C 0.04 1.84 2.59 -11.54 -0.03 1.81 16 10 C -0.50 -26.54 6.61 25.60 0.17 -26.37 16 11 H 0.05 2.61 6.71 -2.91 -0.02 2.59 16 12 C 0.02 0.86 5.30 84.66 0.45 1.31 16 13 N -0.92 -52.38 11.32 21.45 0.24 -52.14 16 14 Si 0.94 42.89 29.54 68.60 2.03 44.92 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.10 -4.76 5.24 30.59 0.16 -4.60 16 19 C -0.08 -3.26 4.78 30.60 0.15 -3.11 16 20 H 0.06 1.95 6.33 -2.38 -0.02 1.93 16 21 H 0.09 1.89 6.30 -2.39 -0.02 1.87 16 22 H 0.03 0.77 6.28 -2.39 -0.02 0.76 16 23 H 0.08 1.97 8.00 -2.39 -0.02 1.95 16 24 H 0.04 1.04 6.94 -2.39 -0.02 1.02 16 25 H 0.09 1.51 6.47 -2.39 -0.02 1.49 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.51 8.03 -2.39 -0.02 2.49 16 28 H 0.06 1.79 6.75 -2.39 -0.02 1.78 16 29 H 0.06 2.22 4.86 -2.39 -0.01 2.21 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 2.27 5.50 -2.39 -0.01 2.26 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -57.12 277.08 3.18 -53.94 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.04 Total: 8.75 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.35 Total: -31.41 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -4.02 Total: -71.52 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -57.12 3.18 -53.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.202 kcal (2) G-P(sol) polarization free energy of solvation -57.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds