Wall clock time and date at job start Sun Mar 29 2020 21:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36714 * 119.99741 * 2 1 4 4 H 1.07997 * 120.00125 * 142.77767 * 3 2 1 5 5 C 1.39127 * 119.99967 * 322.77925 * 3 2 1 6 6 N 1.31320 * 119.99812 * 158.45006 * 5 3 2 7 7 Si 1.86798 * 120.00154 * 338.45423 * 5 3 2 8 8 H 1.48492 * 109.47642 * 95.71383 * 7 5 3 9 9 H 1.48510 * 109.46865 * 215.71746 * 7 5 3 10 10 H 1.48498 * 109.47002 * 335.71359 * 7 5 3 11 11 C 1.34776 * 120.00013 * 179.97438 * 2 1 3 12 12 O 1.21763 * 119.99705 * 180.02562 * 11 2 1 13 13 C 1.43196 * 120.00256 * 359.97438 * 11 2 1 14 14 C 3.48137 * 79.58997 * 179.97438 * 2 1 3 15 15 C 4.85426 * 73.91454 * 179.97438 * 2 1 3 16 16 C 1.40309 * 120.58796 * 223.38572 * 15 14 13 17 17 C 1.38273 * 118.26388 * 180.21738 * 16 15 14 18 18 C 1.38403 * 119.33804 * 359.51311 * 17 16 15 19 19 N 1.31948 * 121.14838 * 0.26913 * 18 17 16 20 20 C 1.31652 * 121.90341 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46928 * 265.14140 * 1 2 3 22 22 H 1.08992 * 109.46858 * 25.14202 * 1 2 3 23 23 H 1.09004 * 109.46709 * 145.14019 * 1 2 3 24 24 H 0.97001 * 120.00079 * 180.02562 * 6 5 3 25 25 H 1.07999 * 120.86736 * 359.97438 * 16 15 14 26 26 H 1.08001 * 120.33474 * 179.78560 * 17 16 15 27 27 H 1.08003 * 119.43201 * 180.25220 * 18 17 16 28 28 H 1.08009 * 119.73587 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.0636 1.2793 0.5658 5 6 1.6654 2.2661 -0.7288 6 7 2.0413 3.4860 -0.4202 7 14 0.4820 1.9840 -2.1463 8 1 -0.9132 2.1565 -1.6682 9 1 0.7602 2.9649 -3.2261 10 1 0.6584 0.6063 -2.6716 11 6 2.1390 -1.1672 0.0005 12 8 3.3566 -1.1671 0.0010 13 6 1.4230 -2.4073 0.0016 14 6 0.8360 -3.4241 0.0015 15 6 0.1201 -4.6642 0.0021 16 6 0.5235 -5.7211 0.8320 17 6 -0.1998 -6.8989 0.7907 18 6 -1.2937 -6.9936 -0.0518 19 7 -1.6542 -5.9822 -0.8187 20 6 -0.9968 -4.8416 -0.8205 21 1 -0.3633 -0.0870 1.0240 22 1 -0.3633 0.9302 -0.4366 23 1 -0.3633 -0.8433 -0.5874 24 1 1.7042 4.2405 -0.9281 25 1 1.3790 -5.6188 1.4832 26 1 0.0834 -7.7350 1.4129 27 1 -1.8622 -7.9114 -0.0822 28 1 -1.3228 -4.0363 -1.4622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177777170.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:40 Heat of formation + Delta-G solvation = 70.752057 kcal Electronic energy + Delta-G solvation = -14407.803378 eV Core-core repulsion = 11812.207552 eV Total energy + Delta-G solvation = -2595.595826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18223 -38.73180 -34.95811 -34.25716 -32.42010 -32.15864 -30.60287 -26.64552 -25.86797 -24.05857 -23.64946 -21.35146 -18.06194 -17.29261 -17.03869 -16.44822 -16.22182 -15.82081 -14.53089 -14.31786 -14.15667 -13.93856 -13.28358 -12.78545 -12.61840 -12.55726 -12.30024 -11.94101 -11.34808 -10.95222 -10.60471 -10.45583 -10.05233 -9.91899 -9.60652 -9.29761 -8.98355 -8.76151 -7.94408 -6.58664 -4.12667 0.54128 1.04583 2.22659 2.82766 2.96728 3.15481 3.19386 3.70380 3.84563 4.01144 4.28458 4.30096 4.63464 4.65970 4.71965 4.92317 4.95578 5.24238 5.50403 5.69774 5.78434 5.89129 5.99921 6.03512 6.20328 6.45490 7.32223 7.53104 7.74644 8.07732 8.31181 8.74080 9.08935 9.54801 10.51619 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.005703 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.596632 B = 4908.094274 C = 5368.989828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.441 5.441 3 C -0.318 4.318 4 H 0.113 0.887 5 C 0.063 3.937 6 N -0.848 5.848 7 Si 0.881 3.119 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.261 1.261 11 C 0.545 3.455 12 O -0.551 6.551 13 C -0.114 4.114 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.054 4.054 17 C -0.170 4.170 18 C 0.098 3.902 19 N -0.483 5.483 20 C 0.123 3.877 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.279 0.721 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.158 0.842 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 -15.783 0.885 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.160 5.160 3 C -0.444 4.444 4 H 0.130 0.870 5 C -0.146 4.146 6 N -0.482 5.482 7 Si 0.708 3.292 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.185 1.185 11 C 0.335 3.665 12 O -0.435 6.435 13 C -0.118 4.118 14 C -0.137 4.137 15 C -0.022 4.022 16 C -0.080 4.080 17 C -0.190 4.190 18 C -0.059 4.059 19 N -0.191 5.191 20 C -0.035 4.035 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.158 0.842 27 H 0.175 0.825 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.124 -15.595 0.311 18.071 hybrid contribution 0.081 0.114 -0.160 0.212 sum -9.043 -15.481 0.151 17.929 Atomic orbital electron populations 1.22085 0.82661 1.01884 1.01682 1.43512 1.04568 1.05169 1.62708 1.19117 1.10634 0.84766 1.29926 0.86966 1.25441 0.97424 0.94641 0.97054 1.69695 1.42583 0.98236 1.37691 0.86886 0.80143 0.79497 0.82677 1.19845 1.20948 1.18549 1.14916 0.86231 0.80222 0.85178 1.90767 1.12178 1.86025 1.54490 1.21727 0.95603 0.94825 0.99620 1.18780 0.99721 0.93872 1.01291 1.17035 0.96090 0.89961 0.99161 1.21823 0.98608 0.91564 0.96014 1.22076 0.97193 0.98564 1.01188 1.22899 0.94296 0.97231 0.91464 1.67702 1.30024 1.00307 1.21026 1.23076 0.90123 0.94946 0.95338 0.92325 0.91115 0.92391 0.91072 0.84143 0.84245 0.82516 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 8.78 59.85 0.53 1.73 15 2 N -0.44 -10.94 2.58 -124.94 -0.32 -11.26 15 3 C -0.32 -8.91 9.36 -15.05 -0.14 -9.05 15 4 H 0.11 3.49 7.90 -52.49 -0.41 3.08 15 5 C 0.06 1.69 5.29 -17.44 -0.09 1.60 15 6 N -0.85 -23.69 13.95 55.51 0.77 -22.91 15 7 Si 0.88 20.01 24.96 -169.99 -4.24 15.76 15 8 H -0.27 -5.67 6.70 56.52 0.38 -5.29 15 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 10 H -0.26 -5.96 7.11 56.52 0.40 -5.56 15 11 C 0.54 13.57 7.48 -14.34 -0.11 13.46 15 12 O -0.55 -15.71 16.96 5.13 0.09 -15.62 15 13 C -0.11 -2.34 11.79 -38.84 -0.46 -2.80 15 14 C -0.13 -2.28 13.29 -38.84 -0.52 -2.80 15 15 C -0.02 -0.28 5.76 -106.60 -0.61 -0.89 15 16 C -0.05 -0.61 9.92 -38.79 -0.38 -1.00 15 17 C -0.17 -1.51 10.09 -39.51 -0.40 -1.91 15 18 C 0.10 0.93 11.17 -17.44 -0.19 0.74 15 19 N -0.48 -5.90 10.34 -12.82 -0.13 -6.04 15 20 C 0.12 1.57 10.94 -17.03 -0.19 1.38 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.07 1.45 3.42 -51.93 -0.18 1.27 15 23 H 0.06 1.02 7.09 -51.93 -0.37 0.65 15 24 H 0.28 7.13 8.31 -40.82 -0.34 6.79 15 25 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.14 0.79 8.06 -52.49 -0.42 0.37 15 27 H 0.16 0.98 8.06 -52.48 -0.42 0.56 15 28 H 0.16 1.85 8.06 -52.48 -0.42 1.42 15 LS Contribution 260.67 15.07 3.93 3.93 Total: -1.00 -32.08 260.67 -4.71 -36.78 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.23 Total: -1.10 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.57 Total: 0.46 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.32 Total: -40.21 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.24 Total: 15.76 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.08 -4.71 -36.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177777170.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.535 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds