Wall clock time and date at job start Sun Mar 29 2020 21:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36714 * 119.99741 * 2 1 4 4 H 1.07997 * 120.00125 * 142.77767 * 3 2 1 5 5 C 1.39127 * 119.99967 * 322.77925 * 3 2 1 6 6 N 1.31320 * 119.99812 * 158.45006 * 5 3 2 7 7 Si 1.86798 * 120.00154 * 338.45423 * 5 3 2 8 8 H 1.48492 * 109.47642 * 95.71383 * 7 5 3 9 9 H 1.48510 * 109.46865 * 215.71746 * 7 5 3 10 10 H 1.48498 * 109.47002 * 335.71359 * 7 5 3 11 11 C 1.34776 * 120.00013 * 179.97438 * 2 1 3 12 12 O 1.21763 * 119.99705 * 180.02562 * 11 2 1 13 13 C 1.43196 * 120.00256 * 359.97438 * 11 2 1 14 14 C 3.48137 * 79.58997 * 179.97438 * 2 1 3 15 15 C 4.85426 * 73.91454 * 179.97438 * 2 1 3 16 16 C 1.40309 * 120.58796 * 223.38572 * 15 14 13 17 17 C 1.38273 * 118.26388 * 180.21738 * 16 15 14 18 18 C 1.38403 * 119.33804 * 359.51311 * 17 16 15 19 19 N 1.31948 * 121.14838 * 0.26913 * 18 17 16 20 20 C 1.31652 * 121.90341 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46928 * 265.14140 * 1 2 3 22 22 H 1.08992 * 109.46858 * 25.14202 * 1 2 3 23 23 H 1.09004 * 109.46709 * 145.14019 * 1 2 3 24 24 H 0.97001 * 120.00079 * 180.02562 * 6 5 3 25 25 H 1.07999 * 120.86736 * 359.97438 * 16 15 14 26 26 H 1.08001 * 120.33474 * 179.78560 * 17 16 15 27 27 H 1.08003 * 119.43201 * 180.25220 * 18 17 16 28 28 H 1.08009 * 119.73587 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.0636 1.2793 0.5658 5 6 1.6654 2.2661 -0.7288 6 7 2.0413 3.4860 -0.4202 7 14 0.4820 1.9840 -2.1463 8 1 -0.9132 2.1565 -1.6682 9 1 0.7602 2.9649 -3.2261 10 1 0.6584 0.6063 -2.6716 11 6 2.1390 -1.1672 0.0005 12 8 3.3566 -1.1671 0.0010 13 6 1.4230 -2.4073 0.0016 14 6 0.8360 -3.4241 0.0015 15 6 0.1201 -4.6642 0.0021 16 6 0.5235 -5.7211 0.8320 17 6 -0.1998 -6.8989 0.7907 18 6 -1.2937 -6.9936 -0.0518 19 7 -1.6542 -5.9822 -0.8187 20 6 -0.9968 -4.8416 -0.8205 21 1 -0.3633 -0.0870 1.0240 22 1 -0.3633 0.9302 -0.4366 23 1 -0.3633 -0.8433 -0.5874 24 1 1.7042 4.2405 -0.9281 25 1 1.3790 -5.6188 1.4832 26 1 0.0834 -7.7350 1.4129 27 1 -1.8622 -7.9114 -0.0822 28 1 -1.3228 -4.0363 -1.4622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177777170.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:40 Heat of formation + Delta-G solvation = 48.326472 kcal Electronic energy + Delta-G solvation = -14408.775824 eV Core-core repulsion = 11812.207552 eV Total energy + Delta-G solvation = -2596.568272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06847 -40.63614 -36.93235 -35.55375 -34.27062 -33.22188 -31.76353 -28.42019 -27.65267 -25.26626 -24.50775 -22.99356 -19.55429 -19.16841 -18.26789 -17.83173 -17.45554 -17.23003 -16.38057 -16.01234 -15.10121 -14.94830 -14.68126 -14.45180 -14.30882 -14.11845 -13.69503 -13.13477 -12.82953 -12.68627 -12.39331 -12.02196 -11.86461 -11.26365 -10.92060 -10.77197 -10.51454 -9.97792 -9.80591 -8.64790 -6.28022 -0.48219 0.21922 0.67778 1.17828 1.32029 1.42459 1.48307 2.09466 2.28204 2.40929 2.81439 2.94977 3.18147 3.52609 3.81621 3.95484 4.07978 4.16892 4.19336 4.43528 4.57288 4.66253 4.78374 5.05395 5.13839 5.37175 5.63399 5.89253 6.06213 6.35281 6.69698 6.88813 7.03865 7.58578 8.50826 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.005703 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.596632 B = 4908.094274 C = 5368.989828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.451 5.451 3 C -0.347 4.347 4 H 0.055 0.945 5 C 0.021 3.979 6 N -0.890 5.890 7 Si 0.950 3.050 8 H -0.231 1.231 9 H -0.279 1.279 10 H -0.263 1.263 11 C 0.548 3.452 12 O -0.607 6.607 13 C -0.187 4.187 14 C -0.052 4.052 15 C -0.064 4.064 16 C -0.052 4.052 17 C -0.158 4.158 18 C 0.109 3.891 19 N -0.504 5.504 20 C 0.127 3.873 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.288 0.712 25 H 0.150 0.850 26 H 0.181 0.819 27 H 0.195 0.805 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 -19.189 0.291 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.169 5.169 3 C -0.474 4.474 4 H 0.073 0.927 5 C -0.184 4.184 6 N -0.525 5.525 7 Si 0.772 3.228 8 H -0.156 1.156 9 H -0.206 1.206 10 H -0.187 1.187 11 C 0.339 3.661 12 O -0.494 6.494 13 C -0.190 4.190 14 C -0.056 4.056 15 C -0.067 4.067 16 C -0.077 4.077 17 C -0.177 4.177 18 C -0.047 4.047 19 N -0.212 5.212 20 C -0.031 4.031 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.168 0.832 26 H 0.198 0.802 27 H 0.212 0.788 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.445 -18.995 -0.263 22.711 hybrid contribution 1.048 0.851 0.130 1.356 sum -11.397 -18.144 -0.134 21.427 Atomic orbital electron populations 1.22285 0.79491 1.02949 1.03730 1.43578 1.06494 1.04080 1.62766 1.18720 1.10238 0.87035 1.31406 0.92669 1.26222 0.99554 0.93664 0.98971 1.69781 1.44471 0.99301 1.38979 0.85816 0.79560 0.79080 0.78319 1.15583 1.20578 1.18735 1.15306 0.85858 0.81656 0.83234 1.90702 1.14788 1.87309 1.56612 1.20656 0.98901 0.95140 1.04349 1.19226 0.96945 0.92998 0.96420 1.17171 0.97640 0.89411 1.02442 1.22084 0.98941 0.91602 0.95100 1.22484 0.95951 0.98520 1.00753 1.23659 0.94003 0.97509 0.89496 1.67806 1.30456 1.00695 1.22279 1.23170 0.89434 0.95620 0.94834 0.90201 0.91227 0.89520 0.90223 0.83194 0.80215 0.78784 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.23 8.78 127.77 1.12 3.35 15 2 N -0.45 -23.19 2.58 -667.37 -1.72 -24.91 15 3 C -0.35 -20.69 9.36 84.15 0.79 -19.90 15 4 H 0.06 3.81 7.90 -2.91 -0.02 3.79 15 5 C 0.02 1.17 5.29 84.98 0.45 1.62 15 6 N -0.89 -51.62 13.95 21.69 0.30 -51.32 15 7 Si 0.95 41.03 24.96 68.60 1.71 42.74 15 8 H -0.23 -8.52 6.70 99.48 0.67 -7.85 15 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 10 H -0.26 -11.38 7.11 99.48 0.71 -10.68 15 11 C 0.55 28.64 7.48 85.49 0.64 29.28 15 12 O -0.61 -37.11 16.96 -4.55 -0.08 -37.18 15 13 C -0.19 -7.74 11.79 30.01 0.35 -7.39 15 14 C -0.05 -1.72 13.29 30.01 0.40 -1.32 15 15 C -0.06 -1.60 5.76 -21.14 -0.12 -1.72 15 16 C -0.05 -0.97 9.92 22.78 0.23 -0.74 15 17 C -0.16 -1.94 10.09 22.32 0.23 -1.72 15 18 C 0.11 1.50 11.17 84.71 0.95 2.45 15 19 N -0.50 -10.31 10.34 -194.46 -2.01 -12.32 15 20 C 0.13 2.84 10.94 85.11 0.93 3.77 15 21 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 22 H 0.07 2.71 3.42 -2.39 -0.01 2.70 15 23 H 0.09 2.85 7.09 -2.38 -0.02 2.84 15 24 H 0.29 15.05 8.31 -92.71 -0.77 14.28 15 25 H 0.15 2.50 8.06 -2.91 -0.02 2.48 15 26 H 0.18 0.82 8.06 -2.91 -0.02 0.80 15 27 H 0.20 1.18 8.06 -2.91 -0.02 1.16 15 28 H 0.17 3.38 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -76.17 260.67 5.31 -70.86 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.15 Total: 4.45 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.96 Total: 7.69 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.43 Total: -88.56 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.08 Total: -37.18 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.71 Total: 42.74 kcal Total: -76.17 5.31 -70.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177777170.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.184 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds