Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99405 * 2 1 4 4 H 1.48501 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 299.99835 * 3 2 1 6 6 H 1.48497 * 109.47081 * 60.00465 * 3 2 1 7 7 C 1.37874 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00088 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46810 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47465 * 305.00157 * 12 11 10 14 14 C 1.53002 * 109.47069 * 65.00428 * 12 11 10 15 15 C 1.53002 * 109.46918 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47365 * 299.99575 * 15 14 12 17 17 C 1.53006 * 109.46700 * 59.99977 * 16 15 14 18 18 C 1.52993 * 109.47172 * 300.00228 * 17 16 15 19 19 H 1.09000 * 109.47115 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47188 * 299.99893 * 18 17 16 21 21 H 0.96993 * 120.00193 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47378 * 59.99872 * 9 7 2 23 23 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 24 24 H 1.09000 * 109.47070 * 300.00061 * 11 10 9 25 25 H 1.09001 * 109.46593 * 60.00058 * 11 10 9 26 26 H 1.09000 * 109.47048 * 299.99452 * 14 12 11 27 27 H 1.08994 * 109.47199 * 59.99565 * 14 12 11 28 28 H 1.09000 * 109.47173 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.47265 * 59.99943 * 15 14 12 30 30 H 1.08999 * 109.47145 * 300.00867 * 16 15 14 31 31 H 1.08998 * 109.46914 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.46739 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.46595 * 60.00553 * 17 16 15 34 34 H 0.96695 * 113.99959 * 299.99943 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 6 1.3519 -5.3366 0.0013 12 6 2.2089 -6.6041 0.0008 13 1 2.9001 -6.5750 -0.8415 14 6 3.0004 -6.6851 1.3076 15 6 3.8569 -7.9529 1.3073 16 6 2.9516 -9.1801 1.1825 17 6 2.1600 -9.0990 -0.1243 18 6 1.3036 -7.8312 -0.1240 19 1 0.7393 -7.7737 -1.0548 20 8 0.3973 -7.8689 0.9803 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6243 -2.5567 0.8903 24 1 0.7230 -5.3232 0.8915 25 1 0.7225 -5.3236 -0.8885 26 1 3.6451 -5.8107 1.3967 27 1 2.3092 -6.7142 2.1498 28 1 4.4212 -8.0105 2.2381 29 1 4.5481 -7.9242 0.4650 30 1 2.2603 -9.2087 2.0248 31 1 3.5619 -10.0832 1.1818 32 1 1.5154 -9.9734 -0.2135 33 1 2.8513 -9.0703 -0.9666 34 1 -0.2085 -8.6224 0.9664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189495181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = -89.127244 kcal Electronic energy + Delta-G solvation = -14131.337552 eV Core-core repulsion = 11767.793134 eV Total energy + Delta-G solvation = -2363.544418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.28539 -35.05527 -33.08967 -32.50298 -29.88264 -28.47169 -26.12608 -23.01630 -22.57242 -21.25853 -19.62733 -16.85917 -16.45366 -15.62181 -15.31094 -14.84886 -14.36211 -14.09844 -13.89502 -12.96389 -12.89200 -12.57726 -12.41896 -12.10775 -11.96845 -11.66575 -11.47380 -10.94044 -10.85934 -10.66362 -10.55126 -10.42147 -10.14044 -9.71712 -9.68454 -9.39501 -8.72847 -8.57001 -6.56288 -6.14261 -4.17937 2.78685 3.28111 3.35015 3.41889 3.98454 4.26543 4.39867 4.69111 4.73850 4.86467 5.17990 5.22754 5.28577 5.38272 5.46063 5.53775 5.58940 5.72884 5.81982 5.94098 6.04085 6.15863 6.20668 6.32054 6.37026 6.55471 6.70424 7.17729 7.20157 7.67348 7.80686 8.08131 8.84359 9.44717 10.97270 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005135 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.927639 B = 5451.142482 C = 5734.329925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.091 3.909 10 S -0.314 6.314 11 C -0.078 4.078 12 C -0.057 4.057 13 H 0.084 0.916 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.150 4.150 18 C 0.112 3.888 19 H 0.052 0.948 20 O -0.557 6.557 21 H 0.264 0.736 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 -17.850 0.413 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.085 0.915 9 C -0.056 4.056 10 S -0.087 6.087 11 C -0.226 4.226 12 C -0.077 4.077 13 H 0.102 0.898 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.188 4.188 18 C 0.051 3.949 19 H 0.070 0.930 20 O -0.361 6.361 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.120 -17.134 0.571 17.632 hybrid contribution -1.367 0.337 -0.269 1.434 sum 2.753 -16.797 0.302 17.024 Atomic orbital electron populations 1.69970 1.06150 1.27115 1.50031 1.24976 0.94956 0.99274 0.94781 0.86308 0.80107 0.82638 0.77682 1.19424 1.20778 1.20764 1.20753 0.93485 0.88829 1.51775 0.91453 1.21018 0.93699 0.90987 0.99898 1.86446 1.21721 1.02508 1.98004 1.23206 1.00063 0.95136 1.04197 1.20927 0.95747 0.91290 0.99693 0.89761 1.21556 0.98618 0.97575 0.97183 1.21545 0.97760 0.94852 1.01466 1.21444 0.98370 0.97724 0.97655 1.22236 0.99690 0.97815 0.99060 1.21835 0.89853 0.94411 0.88771 0.92956 1.86591 1.50588 1.51172 1.47789 0.92636 0.94853 0.94731 0.90294 0.91526 0.90483 0.91258 0.92155 0.92339 0.91452 0.92645 0.92053 0.91135 0.78375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.80 9.13 -34.44 -0.31 -15.11 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 9 C 0.09 2.46 5.70 36.01 0.21 2.67 16 10 S -0.31 -7.07 20.47 -107.50 -2.20 -9.27 16 11 C -0.08 -1.41 5.16 37.16 0.19 -1.22 16 12 C -0.06 -0.83 2.02 -90.62 -0.18 -1.02 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.11 -1.61 4.88 -26.73 -0.13 -1.74 16 15 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 16 C -0.11 -1.14 5.78 -26.73 -0.15 -1.30 16 17 C -0.15 -1.43 5.64 -26.73 -0.15 -1.58 16 18 C 0.11 1.31 3.21 -26.73 -0.09 1.22 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 20 O -0.56 -6.69 11.39 -35.23 -0.40 -7.09 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 23 H 0.03 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.08 1.51 7.83 -51.92 -0.41 1.11 16 25 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.08 1.25 7.13 -51.93 -0.37 0.88 16 27 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.37 2.81 9.08 45.56 0.41 3.23 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -30.84 285.75 -8.39 -39.22 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.93 Total: -0.15 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -0.88 Total: -17.87 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.40 Total: -7.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -2.20 Total: -9.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.84 -8.39 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.903 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds