Wall clock time and date at job start Sun Mar 29 2020 22:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99405 * 2 1 4 4 H 1.48501 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 299.99835 * 3 2 1 6 6 H 1.48497 * 109.47081 * 60.00465 * 3 2 1 7 7 C 1.37874 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00088 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46810 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47465 * 305.00157 * 12 11 10 14 14 C 1.53002 * 109.47069 * 65.00428 * 12 11 10 15 15 C 1.53002 * 109.46918 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47365 * 299.99575 * 15 14 12 17 17 C 1.53006 * 109.46700 * 59.99977 * 16 15 14 18 18 C 1.52993 * 109.47172 * 300.00228 * 17 16 15 19 19 H 1.09000 * 109.47115 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47188 * 299.99893 * 18 17 16 21 21 H 0.96993 * 120.00193 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47378 * 59.99872 * 9 7 2 23 23 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 24 24 H 1.09000 * 109.47070 * 300.00061 * 11 10 9 25 25 H 1.09001 * 109.46593 * 60.00058 * 11 10 9 26 26 H 1.09000 * 109.47048 * 299.99452 * 14 12 11 27 27 H 1.08994 * 109.47199 * 59.99565 * 14 12 11 28 28 H 1.09000 * 109.47173 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.47265 * 59.99943 * 15 14 12 30 30 H 1.08999 * 109.47145 * 300.00867 * 16 15 14 31 31 H 1.08998 * 109.46914 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.46739 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.46595 * 60.00553 * 17 16 15 34 34 H 0.96695 * 113.99959 * 299.99943 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 6 1.3519 -5.3366 0.0013 12 6 2.2089 -6.6041 0.0008 13 1 2.9001 -6.5750 -0.8415 14 6 3.0004 -6.6851 1.3076 15 6 3.8569 -7.9529 1.3073 16 6 2.9516 -9.1801 1.1825 17 6 2.1600 -9.0990 -0.1243 18 6 1.3036 -7.8312 -0.1240 19 1 0.7393 -7.7737 -1.0548 20 8 0.3973 -7.8689 0.9803 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6243 -2.5567 0.8903 24 1 0.7230 -5.3232 0.8915 25 1 0.7225 -5.3236 -0.8885 26 1 3.6451 -5.8107 1.3967 27 1 2.3092 -6.7142 2.1498 28 1 4.4212 -8.0105 2.2381 29 1 4.5481 -7.9242 0.4650 30 1 2.2603 -9.2087 2.0248 31 1 3.5619 -10.0832 1.1818 32 1 1.5154 -9.9734 -0.2135 33 1 2.8513 -9.0703 -0.9666 34 1 -0.2085 -8.6224 0.9664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189495181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:02 Heat of formation + Delta-G solvation = -108.751884 kcal Electronic energy + Delta-G solvation = -14132.188540 eV Core-core repulsion = 11767.793134 eV Total energy + Delta-G solvation = -2364.395406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25822 -36.00265 -35.30827 -33.62373 -30.84253 -30.66490 -27.40347 -25.16167 -23.52107 -22.32085 -20.65660 -18.65763 -17.75535 -17.18094 -16.56156 -16.42202 -15.64918 -15.40066 -15.08903 -14.57016 -14.38854 -14.33547 -13.83024 -13.57719 -13.14611 -13.07611 -12.76999 -12.52491 -12.40978 -12.00693 -11.83981 -11.68426 -11.51946 -11.39297 -10.94144 -10.76887 -10.62457 -10.52604 -8.44501 -8.34758 -6.48663 1.04010 1.39036 1.39508 1.54876 2.04293 2.35923 2.99421 3.38056 3.68047 3.84812 3.87847 4.13832 4.32458 4.34892 4.46947 4.49586 4.61609 4.64823 4.79164 4.90818 4.91993 4.99342 5.03290 5.12136 5.27838 5.30478 5.34825 5.46613 5.55569 5.60601 5.86924 6.59303 6.99918 7.19661 8.77925 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005135 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.927639 B = 5451.142482 C = 5734.329925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.091 3.909 10 S -0.312 6.312 11 C -0.064 4.064 12 C -0.056 4.056 13 H 0.088 0.912 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.143 4.143 18 C 0.115 3.885 19 H 0.061 0.939 20 O -0.577 6.577 21 H 0.271 0.729 22 H 0.011 0.989 23 H 0.008 0.992 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -19.176 0.044 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.081 0.919 9 C -0.057 4.057 10 S -0.085 6.085 11 C -0.212 4.212 12 C -0.076 4.076 13 H 0.106 0.894 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.181 4.181 18 C 0.055 3.945 19 H 0.079 0.921 20 O -0.385 6.385 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.949 -18.482 0.202 19.134 hybrid contribution -1.680 0.660 -0.130 1.809 sum 3.270 -17.822 0.072 18.120 Atomic orbital electron populations 1.70077 1.07819 1.28556 1.50200 1.25978 0.95906 1.03246 0.93693 0.85172 0.78725 0.77504 0.78285 1.18829 1.19589 1.19716 1.21045 0.93436 0.90185 1.52782 0.91910 1.20724 0.94219 0.93265 0.97476 1.86251 1.21490 1.02792 1.97940 1.23316 0.99774 0.94456 1.03685 1.20982 0.95988 0.90724 0.99889 0.89360 1.21482 0.98284 0.98362 0.96541 1.21531 0.97704 0.93993 1.02100 1.21436 0.98225 0.97489 0.97787 1.22202 0.99726 0.97224 0.98957 1.21766 0.89880 0.93842 0.89018 0.92080 1.86544 1.51273 1.52765 1.47946 0.92048 0.97076 0.97361 0.91544 0.91196 0.93037 0.92755 0.91620 0.91702 0.92035 0.90598 0.89485 0.90383 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.54 -31.96 9.13 25.60 0.23 -31.72 16 8 H 0.06 3.72 7.71 -2.91 -0.02 3.69 16 9 C 0.09 5.13 5.70 71.24 0.41 5.54 16 10 S -0.31 -14.42 20.47 -56.49 -1.16 -15.58 16 11 C -0.06 -2.35 5.16 71.98 0.37 -1.98 16 12 C -0.06 -1.59 2.02 -10.79 -0.02 -1.61 16 13 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.11 -3.10 4.88 30.60 0.15 -2.95 16 15 C -0.12 -2.45 5.92 30.60 0.18 -2.27 16 16 C -0.11 -1.89 5.78 30.60 0.18 -1.72 16 17 C -0.14 -2.21 5.64 30.59 0.17 -2.04 16 18 C 0.12 2.45 3.21 30.59 0.10 2.54 16 19 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 20 O -0.58 -12.86 11.39 -148.98 -1.70 -14.56 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.07 2.61 7.83 -2.39 -0.02 2.59 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 1.70 7.13 -2.39 -0.02 1.68 16 27 H 0.05 1.69 7.68 -2.39 -0.02 1.67 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.13 7.68 -2.39 -0.02 1.12 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.39 4.98 9.08 -74.06 -0.67 4.31 16 Total: -1.00 -67.55 285.75 2.08 -65.47 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.39 Total: 8.90 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 2.23 Total: -35.04 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.70 Total: -14.56 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -1.16 Total: -15.58 kcal Total: -67.55 2.08 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.278 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds