Wall clock time and date at job start Sun Mar 29 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.81394 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.47484 * 54.99983 * 12 11 10 14 14 C 1.52998 * 109.47261 * 295.00145 * 12 11 10 15 15 C 1.52999 * 109.47261 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47190 * 59.99995 * 15 14 12 17 17 C 1.52998 * 109.47022 * 300.00151 * 16 15 14 18 18 C 1.52999 * 109.47261 * 59.99892 * 17 16 15 19 19 H 1.08999 * 109.46999 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46884 * 60.00371 * 18 17 16 21 21 H 0.97006 * 119.99823 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09002 * 109.47501 * 299.99574 * 11 10 9 25 25 H 1.08998 * 109.47135 * 60.00434 * 11 10 9 26 26 H 1.09002 * 109.47021 * 299.99882 * 14 12 11 27 27 H 1.09003 * 109.47245 * 59.99902 * 14 12 11 28 28 H 1.09009 * 109.47415 * 179.97438 * 15 14 12 29 29 H 1.08993 * 109.47214 * 299.99835 * 15 14 12 30 30 H 1.09002 * 109.47231 * 60.00033 * 16 15 14 31 31 H 1.09007 * 109.47077 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47245 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.47155 * 299.99260 * 17 16 15 34 34 H 0.96696 * 114.00635 * 59.99857 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4296 -3.8781 -0.0005 11 6 1.3512 -5.3367 0.0003 12 6 2.2079 -6.6043 -0.0003 13 1 2.9004 -6.5753 0.8410 14 6 2.9977 -6.6855 -1.3082 15 6 3.8550 -7.9528 -1.3085 16 6 2.9505 -9.1803 -1.1818 17 6 2.1608 -9.0991 0.1260 18 6 1.3035 -7.8318 0.1263 19 1 0.7405 -7.7743 1.0579 20 8 0.3958 -7.8706 -0.9766 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 0.7223 -5.3232 0.8905 25 1 0.7218 -5.3237 -0.8895 26 1 2.3053 -6.7146 -2.1495 27 1 3.6424 -5.8112 -1.3982 28 1 4.4173 -8.0109 -2.2405 29 1 4.5473 -7.9233 -0.4672 30 1 2.2581 -9.2099 -2.0231 31 1 3.5613 -10.0832 -1.1825 32 1 1.5161 -9.9734 0.2161 33 1 2.8532 -9.0697 0.9674 34 1 -0.2095 -8.6245 -0.9615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189495191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:04 Heat of formation + Delta-G solvation = -89.110122 kcal Electronic energy + Delta-G solvation = -14131.121585 eV Core-core repulsion = 11767.577910 eV Total energy + Delta-G solvation = -2363.543676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.28565 -35.05599 -33.08803 -32.50260 -29.88228 -28.47012 -26.12660 -23.01304 -22.57231 -21.25792 -19.62676 -16.85932 -16.45059 -15.62029 -15.31012 -14.84889 -14.36402 -14.10015 -13.89611 -12.96466 -12.89178 -12.57553 -12.41080 -12.10623 -11.96827 -11.66880 -11.47352 -10.93749 -10.84119 -10.67072 -10.56006 -10.42250 -10.13731 -9.72495 -9.68529 -9.40243 -8.72995 -8.56283 -6.56238 -6.14047 -4.17753 2.78719 3.29524 3.34823 3.40616 3.98464 4.26573 4.39968 4.69112 4.73867 4.86469 5.17984 5.22914 5.28587 5.38289 5.46087 5.53793 5.58893 5.72870 5.82007 5.94112 6.04090 6.15847 6.20643 6.32057 6.37045 6.55471 6.70396 7.17849 7.20183 7.67395 7.80601 8.08293 8.84162 9.44761 10.97433 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005135 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.931386 B = 5451.391616 C = 5734.491855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.091 3.909 10 S -0.314 6.314 11 C -0.078 4.078 12 C -0.057 4.057 13 H 0.084 0.916 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.150 4.150 18 C 0.112 3.888 19 H 0.052 0.948 20 O -0.557 6.557 21 H 0.265 0.735 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -17.837 -0.408 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.056 4.056 10 S -0.087 6.087 11 C -0.226 4.226 12 C -0.077 4.077 13 H 0.102 0.898 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.188 4.188 18 C 0.051 3.949 19 H 0.070 0.930 20 O -0.361 6.361 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.104 -17.120 -0.563 17.613 hybrid contribution -1.354 0.333 0.260 1.418 sum 2.750 -16.787 -0.303 17.013 Atomic orbital electron populations 1.69965 1.06152 1.27214 1.49925 1.24975 0.94959 0.99263 0.94769 0.86359 0.79738 0.82285 0.78317 1.20371 1.21025 1.19568 1.20713 0.93444 0.88844 1.51926 0.91514 1.21012 0.93690 0.90963 0.99892 1.86444 1.21724 1.02510 1.98004 1.23204 1.00064 0.95135 1.04196 1.20926 0.95758 0.91288 0.99685 0.89769 1.21556 0.98619 0.97582 0.97173 1.21546 0.97766 0.94850 1.01460 1.21443 0.98386 0.97726 0.97644 1.22237 0.99687 0.97820 0.99053 1.21835 0.89828 0.94414 0.88795 0.92956 1.86589 1.50540 1.51149 1.47863 0.92585 0.94742 0.94855 0.91519 0.90302 0.91256 0.90488 0.92155 0.92330 0.91460 0.92647 0.92055 0.91129 0.78375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.51 -14.82 9.13 -34.44 -0.31 -15.14 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 9 C 0.09 2.48 5.70 36.01 0.21 2.68 16 10 S -0.31 -7.07 20.47 -107.50 -2.20 -9.27 16 11 C -0.08 -1.41 5.17 37.16 0.19 -1.22 16 12 C -0.06 -0.83 2.02 -90.62 -0.18 -1.02 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.11 -1.61 4.88 -26.73 -0.13 -1.74 16 15 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 16 C -0.11 -1.14 5.78 -26.73 -0.15 -1.30 16 17 C -0.15 -1.43 5.64 -26.73 -0.15 -1.58 16 18 C 0.11 1.31 3.21 -26.73 -0.09 1.22 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 20 O -0.56 -6.69 11.39 -35.23 -0.40 -7.10 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.98 8.14 -51.92 -0.42 0.55 16 23 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 24 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 25 H 0.08 1.51 7.84 -51.93 -0.41 1.11 16 26 H 0.07 1.07 7.68 -51.93 -0.40 0.68 16 27 H 0.08 1.25 7.13 -51.93 -0.37 0.88 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.37 2.81 9.08 45.56 0.41 3.23 16 LS Contribution 285.76 15.07 4.31 4.31 Total: -1.00 -30.81 285.76 -8.39 -39.20 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.93 Total: -0.12 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.88 Total: -17.88 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.40 Total: -7.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -2.20 Total: -9.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.81 -8.39 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.910 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds