Wall clock time and date at job start Sun Mar 29 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.81394 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.47484 * 54.99983 * 12 11 10 14 14 C 1.52998 * 109.47261 * 295.00145 * 12 11 10 15 15 C 1.52999 * 109.47261 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47190 * 59.99995 * 15 14 12 17 17 C 1.52998 * 109.47022 * 300.00151 * 16 15 14 18 18 C 1.52999 * 109.47261 * 59.99892 * 17 16 15 19 19 H 1.08999 * 109.46999 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46884 * 60.00371 * 18 17 16 21 21 H 0.97006 * 119.99823 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09002 * 109.47501 * 299.99574 * 11 10 9 25 25 H 1.08998 * 109.47135 * 60.00434 * 11 10 9 26 26 H 1.09002 * 109.47021 * 299.99882 * 14 12 11 27 27 H 1.09003 * 109.47245 * 59.99902 * 14 12 11 28 28 H 1.09009 * 109.47415 * 179.97438 * 15 14 12 29 29 H 1.08993 * 109.47214 * 299.99835 * 15 14 12 30 30 H 1.09002 * 109.47231 * 60.00033 * 16 15 14 31 31 H 1.09007 * 109.47077 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47245 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.47155 * 299.99260 * 17 16 15 34 34 H 0.96696 * 114.00635 * 59.99857 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4296 -3.8781 -0.0005 11 6 1.3512 -5.3367 0.0003 12 6 2.2079 -6.6043 -0.0003 13 1 2.9004 -6.5753 0.8410 14 6 2.9977 -6.6855 -1.3082 15 6 3.8550 -7.9528 -1.3085 16 6 2.9505 -9.1803 -1.1818 17 6 2.1608 -9.0991 0.1260 18 6 1.3035 -7.8318 0.1263 19 1 0.7405 -7.7743 1.0579 20 8 0.3958 -7.8706 -0.9766 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 0.7223 -5.3232 0.8905 25 1 0.7218 -5.3237 -0.8895 26 1 2.3053 -6.7146 -2.1495 27 1 3.6424 -5.8112 -1.3982 28 1 4.4173 -8.0109 -2.2405 29 1 4.5473 -7.9233 -0.4672 30 1 2.2581 -9.2099 -2.0231 31 1 3.5613 -10.0832 -1.1825 32 1 1.5161 -9.9734 0.2161 33 1 2.8532 -9.0697 0.9674 34 1 -0.2095 -8.6245 -0.9615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189495191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:04 Heat of formation + Delta-G solvation = -108.713049 kcal Electronic energy + Delta-G solvation = -14131.971632 eV Core-core repulsion = 11767.577910 eV Total energy + Delta-G solvation = -2364.393722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25863 -36.00358 -35.30644 -33.62361 -30.84196 -30.66356 -27.40414 -25.15840 -23.52108 -22.32047 -20.65623 -18.65335 -17.75566 -17.17927 -16.56164 -16.42373 -15.65074 -15.40110 -15.08946 -14.56110 -14.38972 -14.33462 -13.82984 -13.57696 -13.14877 -13.07888 -12.74894 -12.52785 -12.40715 -12.01282 -11.84522 -11.68727 -11.52621 -11.39435 -10.94007 -10.76257 -10.62463 -10.52624 -8.44457 -8.34538 -6.48486 1.04030 1.39116 1.40988 1.53637 2.04269 2.36077 2.99651 3.38065 3.68049 3.84796 3.87811 4.13802 4.32490 4.34858 4.46931 4.49593 4.61613 4.64815 4.79146 4.90882 4.91994 4.99315 5.03246 5.12097 5.27821 5.30449 5.34764 5.46627 5.55412 5.60581 5.87036 6.59154 6.99942 7.19699 8.77920 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.058942 B = 0.005135 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.931386 B = 5451.391616 C = 5734.491855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.091 3.909 10 S -0.312 6.312 11 C -0.064 4.064 12 C -0.056 4.056 13 H 0.088 0.912 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.143 4.143 18 C 0.115 3.885 19 H 0.061 0.939 20 O -0.577 6.577 21 H 0.271 0.729 22 H 0.008 0.992 23 H 0.011 0.989 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -19.169 -0.050 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.057 4.057 10 S -0.085 6.085 11 C -0.212 4.212 12 C -0.076 4.076 13 H 0.106 0.894 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.181 4.181 18 C 0.055 3.945 19 H 0.079 0.921 20 O -0.385 6.385 21 H 0.080 0.920 22 H 0.026 0.974 23 H 0.029 0.971 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.956 -18.474 -0.206 19.129 hybrid contribution -1.673 0.656 0.124 1.801 sum 3.283 -17.818 -0.082 18.118 Atomic orbital electron populations 1.70075 1.07826 1.28609 1.50110 1.25980 0.95908 1.03243 0.93678 0.85223 0.78459 0.77205 0.78827 1.19354 1.19884 1.18819 1.21017 0.93438 0.90191 1.52911 0.91901 1.20719 0.94214 0.93254 0.97465 1.86246 1.21486 1.02786 1.97940 1.23314 0.99776 0.94462 1.03684 1.20981 0.95998 0.90722 0.99884 0.89368 1.21481 0.98284 0.98369 0.96529 1.21531 0.97707 0.93993 1.02096 1.21435 0.98242 0.97490 0.97776 1.22203 0.99723 0.97229 0.98949 1.21767 0.89858 0.93844 0.89042 0.92081 1.86542 1.51224 1.52743 1.48020 0.92049 0.97377 0.97084 0.91191 0.91552 0.92755 0.93038 0.91617 0.91693 0.92044 0.90599 0.89488 0.90377 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.72 5.46 84.66 0.46 1.18 16 3 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -32.02 9.13 25.60 0.23 -31.78 16 8 H 0.06 3.71 7.71 -2.91 -0.02 3.69 16 9 C 0.09 5.15 5.70 71.24 0.41 5.55 16 10 S -0.31 -14.41 20.47 -56.49 -1.16 -15.57 16 11 C -0.06 -2.35 5.17 71.98 0.37 -1.98 16 12 C -0.06 -1.59 2.02 -10.79 -0.02 -1.61 16 13 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 14 C -0.11 -3.10 4.88 30.59 0.15 -2.95 16 15 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 16 C -0.11 -1.89 5.78 30.59 0.18 -1.72 16 17 C -0.14 -2.21 5.64 30.59 0.17 -2.04 16 18 C 0.12 2.45 3.21 30.59 0.10 2.54 16 19 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 20 O -0.58 -12.87 11.39 -148.98 -1.70 -14.56 16 21 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.07 2.61 7.84 -2.39 -0.02 2.59 16 26 H 0.05 1.69 7.68 -2.39 -0.02 1.67 16 27 H 0.05 1.70 7.13 -2.39 -0.02 1.68 16 28 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 34 H 0.39 4.98 9.08 -74.06 -0.67 4.31 16 Total: -1.00 -67.51 285.76 2.08 -65.43 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.39 Total: 9.01 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 2.23 Total: -35.07 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.05 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.70 Total: -14.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -14.41 SS G_CDS: -1.16 Total: -15.57 kcal Total: -67.51 2.08 -65.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.284 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds