Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00277 * 2 1 4 4 H 1.48499 * 109.47475 * 270.00306 * 3 2 1 5 5 H 1.48499 * 109.46954 * 30.00335 * 3 2 1 6 6 H 1.48504 * 109.47314 * 150.00379 * 3 2 1 7 7 C 1.37881 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99722 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.81393 * 103.00355 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47654 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46716 * 304.99897 * 12 11 10 14 14 C 1.52992 * 109.46961 * 64.99527 * 12 11 10 15 15 C 1.53002 * 109.47106 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47128 * 300.00123 * 15 14 12 17 17 C 1.52997 * 109.46978 * 59.99726 * 16 15 14 18 18 C 1.52997 * 109.47317 * 184.99988 * 12 11 10 19 19 H 1.09002 * 109.47153 * 299.99641 * 18 12 11 20 20 O 1.42898 * 109.47319 * 59.99948 * 18 12 11 21 21 H 0.96999 * 119.99555 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46909 * 60.00240 * 9 7 2 23 23 H 1.08994 * 109.47431 * 299.99885 * 9 7 2 24 24 H 1.08998 * 109.47158 * 59.99388 * 11 10 9 25 25 H 1.09000 * 109.46948 * 300.00028 * 11 10 9 26 26 H 1.09002 * 109.47103 * 60.00608 * 14 12 11 27 27 H 1.08996 * 109.47747 * 300.00196 * 14 12 11 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47596 * 60.00070 * 15 14 12 30 30 H 1.09002 * 109.47097 * 299.99925 * 16 15 14 31 31 H 1.08998 * 109.47844 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47140 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47497 * 60.00450 * 17 16 15 34 34 H 0.96701 * 113.99881 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 6 1.3515 -5.3367 -0.0027 12 6 2.2082 -6.6043 -0.0033 13 1 2.9000 -6.5748 -0.8452 14 6 2.9990 -6.6860 1.3038 15 6 3.8563 -7.9534 1.3029 16 6 2.9517 -9.1809 1.1765 17 6 2.1609 -9.0991 -0.1307 18 6 1.3033 -7.8315 -0.1296 19 1 0.6116 -7.8610 0.7123 20 8 0.5647 -7.7552 -1.3505 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5572 0.8896 24 1 0.7219 -5.3228 -0.8923 25 1 0.7227 -5.3241 0.8876 26 1 2.3073 -6.7155 2.1457 27 1 3.6438 -5.8118 1.3938 28 1 4.4194 -8.0118 2.2343 29 1 4.5481 -7.9236 0.4611 30 1 2.2600 -9.2107 2.0183 31 1 3.5623 -10.0838 1.1763 32 1 1.5162 -9.9733 -0.2206 33 1 2.8526 -9.0693 -0.9726 34 1 -0.0317 -8.5022 -1.4968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189495194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = -90.863634 kcal Electronic energy + Delta-G solvation = -14052.436821 eV Core-core repulsion = 11688.817108 eV Total energy + Delta-G solvation = -2363.619714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18522 -35.56268 -33.08594 -32.50506 -29.67340 -28.46568 -26.13604 -23.01417 -22.60137 -21.19806 -19.82111 -17.24625 -16.44291 -15.46272 -15.34383 -14.72617 -14.45457 -14.06780 -13.76477 -13.31777 -12.96342 -12.61064 -12.40247 -12.22972 -11.88665 -11.67061 -11.38401 -11.02144 -10.83981 -10.75436 -10.61559 -10.42081 -10.23431 -9.83430 -9.72449 -9.39687 -8.73117 -8.56057 -6.55621 -6.13799 -4.17486 2.78934 3.29736 3.35014 3.40780 3.98812 4.17513 4.40183 4.60763 4.68733 4.93704 5.09723 5.19072 5.23168 5.32862 5.41102 5.45545 5.50481 5.70780 5.79202 5.93678 6.00987 6.04592 6.16508 6.20867 6.36987 6.46817 6.55001 7.18190 7.20564 7.65904 7.80881 8.08564 8.84430 9.45012 10.97706 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.052657 B = 0.005188 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.611469 B = 5395.988135 C = 5759.943498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.091 3.909 10 S -0.313 6.313 11 C -0.079 4.079 12 C -0.057 4.057 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.149 4.149 18 C 0.112 3.888 19 H 0.054 0.946 20 O -0.562 6.562 21 H 0.265 0.735 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -17.914 1.794 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.056 4.056 10 S -0.086 6.086 11 C -0.228 4.228 12 C -0.077 4.077 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.187 4.187 18 C 0.051 3.949 19 H 0.072 0.928 20 O -0.367 6.367 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.158 -17.187 1.742 17.769 hybrid contribution -1.392 0.311 0.049 1.427 sum 2.766 -16.876 1.791 17.195 Atomic orbital electron populations 1.69965 1.06151 1.27210 1.49939 1.24974 0.94960 0.99263 0.94772 0.86358 0.79732 0.82283 0.78316 1.20376 1.21027 1.19569 1.20711 0.93446 0.88841 1.51911 0.91511 1.21014 0.93704 0.90964 0.99898 1.86428 1.21697 1.02443 1.98005 1.23212 1.00153 0.95203 1.04183 1.20867 0.96141 0.91360 0.99304 0.89988 1.21648 0.98889 0.98406 0.96332 1.21586 0.97979 0.94415 1.01916 1.21495 0.98518 0.98303 0.97147 1.22266 0.99742 0.97741 0.98982 1.21880 0.92253 0.94394 0.86355 0.92844 1.86599 1.59569 1.49255 1.41293 0.92588 0.94769 0.94810 0.90172 0.91516 0.91938 0.89594 0.91822 0.91853 0.91971 0.92002 0.92030 0.91107 0.78144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.84 9.13 -34.44 -0.31 -15.15 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 9 C 0.09 2.47 5.70 36.01 0.21 2.68 16 10 S -0.31 -7.08 20.47 -107.50 -2.20 -9.28 16 11 C -0.08 -1.45 5.31 37.16 0.20 -1.26 16 12 C -0.06 -0.85 1.93 -90.63 -0.17 -1.02 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.12 -1.54 5.03 -26.73 -0.13 -1.67 16 15 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 16 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 17 C -0.15 -1.45 5.55 -26.71 -0.15 -1.60 16 18 C 0.11 1.35 2.90 -26.71 -0.08 1.27 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 O -0.56 -7.18 12.56 -35.23 -0.44 -7.63 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 23 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.56 7.54 -51.93 -0.39 1.17 16 25 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.31 7.13 -51.93 -0.37 0.94 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.37 2.96 9.08 45.56 0.41 3.37 16 LS Contribution 287.49 15.07 4.33 4.33 Total: -1.00 -31.09 287.49 -8.42 -39.51 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.96 Total: -0.09 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.86 Total: -17.69 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.44 Total: -7.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -2.20 Total: -9.28 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.09 -8.42 -39.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.356 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds