Wall clock time and date at job start Sun Mar 29 2020 22:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00277 * 2 1 4 4 H 1.48499 * 109.47475 * 270.00306 * 3 2 1 5 5 H 1.48499 * 109.46954 * 30.00335 * 3 2 1 6 6 H 1.48504 * 109.47314 * 150.00379 * 3 2 1 7 7 C 1.37881 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99722 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.81393 * 103.00355 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47654 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46716 * 304.99897 * 12 11 10 14 14 C 1.52992 * 109.46961 * 64.99527 * 12 11 10 15 15 C 1.53002 * 109.47106 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47128 * 300.00123 * 15 14 12 17 17 C 1.52997 * 109.46978 * 59.99726 * 16 15 14 18 18 C 1.52997 * 109.47317 * 184.99988 * 12 11 10 19 19 H 1.09002 * 109.47153 * 299.99641 * 18 12 11 20 20 O 1.42898 * 109.47319 * 59.99948 * 18 12 11 21 21 H 0.96999 * 119.99555 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46909 * 60.00240 * 9 7 2 23 23 H 1.08994 * 109.47431 * 299.99885 * 9 7 2 24 24 H 1.08998 * 109.47158 * 59.99388 * 11 10 9 25 25 H 1.09000 * 109.46948 * 300.00028 * 11 10 9 26 26 H 1.09002 * 109.47103 * 60.00608 * 14 12 11 27 27 H 1.08996 * 109.47747 * 300.00196 * 14 12 11 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47596 * 60.00070 * 15 14 12 30 30 H 1.09002 * 109.47097 * 299.99925 * 16 15 14 31 31 H 1.08998 * 109.47844 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47140 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47497 * 60.00450 * 17 16 15 34 34 H 0.96701 * 113.99881 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 6 1.3515 -5.3367 -0.0027 12 6 2.2082 -6.6043 -0.0033 13 1 2.9000 -6.5748 -0.8452 14 6 2.9990 -6.6860 1.3038 15 6 3.8563 -7.9534 1.3029 16 6 2.9517 -9.1809 1.1765 17 6 2.1609 -9.0991 -0.1307 18 6 1.3033 -7.8315 -0.1296 19 1 0.6116 -7.8610 0.7123 20 8 0.5647 -7.7552 -1.3505 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5572 0.8896 24 1 0.7219 -5.3228 -0.8923 25 1 0.7227 -5.3241 0.8876 26 1 2.3073 -6.7155 2.1457 27 1 3.6438 -5.8118 1.3938 28 1 4.4194 -8.0118 2.2343 29 1 4.5481 -7.9236 0.4611 30 1 2.2600 -9.2107 2.0183 31 1 3.5623 -10.0838 1.1763 32 1 1.5162 -9.9733 -0.2206 33 1 2.8526 -9.0693 -0.9726 34 1 -0.0317 -8.5022 -1.4968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189495194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:07 Heat of formation + Delta-G solvation = -110.876484 kcal Electronic energy + Delta-G solvation = -14053.304644 eV Core-core repulsion = 11688.817108 eV Total energy + Delta-G solvation = -2364.487536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16605 -36.51229 -35.30833 -33.61884 -30.74333 -30.54739 -27.39711 -25.16067 -23.53672 -22.24591 -20.81437 -18.65554 -18.20082 -17.17624 -16.61974 -16.23856 -15.70611 -15.14847 -15.06488 -14.53292 -14.48182 -14.31975 -14.00678 -13.81742 -13.28792 -12.87263 -12.71023 -12.54498 -12.44095 -12.06087 -11.88819 -11.66638 -11.51248 -11.40969 -11.05060 -10.76143 -10.67064 -10.62173 -8.45126 -8.34568 -6.48535 1.02919 1.39116 1.41039 1.53662 2.03622 2.36097 2.99612 3.27919 3.58498 3.79787 3.93154 4.16096 4.28358 4.31366 4.41055 4.42824 4.55081 4.59448 4.78094 4.90903 4.91652 4.96899 5.03632 5.18089 5.21958 5.23290 5.31347 5.40353 5.53511 5.55384 5.86888 6.59049 6.94672 7.19639 8.77919 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.052657 B = 0.005188 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.611469 B = 5395.988135 C = 5759.943498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.091 3.909 10 S -0.311 6.311 11 C -0.066 4.066 12 C -0.055 4.055 13 H 0.066 0.934 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.115 3.885 19 H 0.063 0.937 20 O -0.586 6.586 21 H 0.271 0.729 22 H 0.007 0.993 23 H 0.012 0.988 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -19.227 2.254 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.057 4.057 10 S -0.084 6.084 11 C -0.215 4.215 12 C -0.074 4.074 13 H 0.085 0.915 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.180 4.180 18 C 0.054 3.946 19 H 0.081 0.919 20 O -0.395 6.395 21 H 0.080 0.920 22 H 0.026 0.974 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.878 -18.524 2.199 19.281 hybrid contribution -1.670 0.630 -0.116 1.789 sum 3.208 -17.894 2.083 18.299 Atomic orbital electron populations 1.70074 1.07821 1.28616 1.50099 1.25979 0.95912 1.03239 0.93669 0.85220 0.78460 0.77196 0.78822 1.19372 1.19858 1.18815 1.21012 0.93436 0.90179 1.52932 0.91907 1.20724 0.94214 0.93216 0.97497 1.86246 1.21471 1.02716 1.97946 1.23322 0.99880 0.94544 1.03725 1.20896 0.96091 0.90796 0.99649 0.91514 1.21603 0.98829 0.99111 0.95544 1.21566 0.97844 0.93632 1.02502 1.21502 0.98520 0.98072 0.97044 1.22211 0.99607 0.97098 0.99080 1.21836 0.92313 0.93881 0.86529 0.91933 1.86544 1.60362 1.51021 1.41543 0.92041 0.97421 0.96965 0.91433 0.91062 0.91381 0.92101 0.90520 0.92231 0.91103 0.90003 0.89422 0.91849 0.75674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -32.07 9.13 25.60 0.23 -31.84 16 8 H 0.06 3.72 7.71 -2.91 -0.02 3.69 16 9 C 0.09 5.16 5.70 71.24 0.41 5.57 16 10 S -0.31 -14.49 20.47 -56.49 -1.16 -15.65 16 11 C -0.07 -2.47 5.31 71.98 0.38 -2.09 16 12 C -0.05 -1.59 1.93 -10.80 -0.02 -1.61 16 13 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.11 -2.91 5.03 30.59 0.15 -2.76 16 15 C -0.12 -2.25 5.92 30.60 0.18 -2.07 16 16 C -0.11 -1.69 5.92 30.59 0.18 -1.51 16 17 C -0.14 -2.32 5.55 30.61 0.17 -2.15 16 18 C 0.11 2.56 2.90 30.61 0.09 2.65 16 19 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 20 O -0.59 -14.10 12.56 -148.98 -1.87 -15.97 16 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 2.69 7.54 -2.39 -0.02 2.67 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.39 5.40 9.08 -74.06 -0.67 4.73 16 Total: -1.00 -68.10 287.49 1.91 -66.19 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.39 Total: 9.27 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 2.24 Total: -34.63 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.06 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.87 Total: -15.97 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -14.49 SS G_CDS: -1.16 Total: -15.65 kcal Total: -68.10 1.91 -66.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189495194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.687 kcal (2) G-P(sol) polarization free energy of solvation -68.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds