Wall clock time and date at job start Sun Mar 29 2020 21:43:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13596 * 1
3 3 C 1.47204 * 179.97438 * 2 1
4 4 C 1.52993 * 109.47267 * 271.13070 * 3 2 1
5 5 C 1.53500 * 114.20830 * 174.99954 * 4 3 2
6 6 N 1.47068 * 87.98269 * 139.65516 * 5 4 3
7 7 S 1.65602 * 136.05449 * 152.84819 * 6 5 4
8 8 O 1.42104 * 106.40275 * 336.45858 * 7 6 5
9 9 O 1.42096 * 106.40308 * 203.53797 * 7 6 5
10 10 C 1.76201 * 107.21768 * 89.99823 * 7 6 5
11 11 H 1.08000 * 120.00595 * 359.97438 * 10 7 6
12 12 C 1.37885 * 119.99870 * 180.02562 * 10 7 6
13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7
14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7
15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10
16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10
17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10
18 18 C 1.47064 * 87.88926 * 333.10048 * 6 5 4
19 19 H 1.09001 * 109.46854 * 151.12773 * 3 2 1
20 20 H 1.08997 * 109.46889 * 31.13398 * 3 2 1
21 21 H 1.08997 * 113.28113 * 41.93388 * 4 3 2
22 22 H 1.09000 * 113.46119 * 24.87919 * 5 4 3
23 23 H 1.08998 * 113.46832 * 254.44046 * 5 4 3
24 24 H 0.97001 * 119.99646 * 179.97438 * 13 12 10
25 25 H 1.09001 * 113.46577 * 141.67633 * 18 6 5
26 26 H 1.09001 * 113.47090 * 272.12000 * 18 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1180 -0.0276 1.4421
5 6 4.6428 -0.1514 1.5682
6 7 4.5783 0.8190 2.6714
7 16 5.4807 1.1540 4.0189
8 8 6.1826 -0.0394 4.3388
9 8 4.6117 1.8126 4.9302
10 6 6.6990 2.3373 3.5498
11 1 6.7397 2.6963 2.5320
12 6 7.6014 2.8043 4.4820
13 7 7.5523 2.3669 5.7213
14 14 8.8935 4.0583 3.9845
15 1 9.7344 4.3960 5.1610
16 1 9.7481 3.4894 2.9116
17 1 8.2248 5.2868 3.4856
18 6 3.3563 1.3568 2.0547
19 1 2.9709 0.9008 -0.4962
20 1 2.9717 -0.8788 -0.5313
21 1 2.5597 -0.7097 2.0833
22 1 5.1818 0.2182 0.6959
23 1 4.9735 -1.1421 1.8802
24 1 8.1874 2.6952 6.3769
25 1 2.5954 1.6459 2.7796
26 1 3.5493 2.1321 1.3133
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192933421.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:43:32
Heat of formation + Delta-G solvation = -32.551234 kcal
Electronic energy + Delta-G solvation = -13837.876229 eV
Core-core repulsion = 11237.411693 eV
Total energy + Delta-G solvation = -2600.464536 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 230.051 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.36630 -36.50316 -35.22703 -33.99180 -33.10900 -31.49532 -26.24758 -25.86677
-25.66817 -20.38050 -18.79060 -17.80559 -17.27181 -16.28191 -15.48871 -15.10311
-14.77326 -14.32604 -13.89654 -13.60882 -13.00000 -12.69316 -12.44134 -12.15438
-12.05102 -11.72427 -11.40725 -11.22184 -11.19511 -10.64585 -10.35369 -10.32262
-10.21542 -10.16177 -9.26338 -9.01872 -8.31622 -6.71952 -5.34708 2.13765
2.71315 2.73747 3.06463 3.10989 3.16029 3.86757 4.01993 4.43512
4.48624 4.61570 4.89913 5.15239 5.29017 5.45988 5.56147 5.61128
5.77537 5.87304 5.91459 6.03854 6.38241 7.06662 7.23434 7.32787
7.51213 7.94734 8.86311 10.21669
Molecular weight = 230.05amu
Principal moments of inertia in cm(-1)
A = 0.048106 B = 0.007028 C = 0.006690
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 581.910871 B = 3983.149521 C = 4184.384367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.446 5.446
2 C 0.212 3.788
3 C -0.017 4.017
4 C -0.130 4.130
5 C 0.135 3.865
6 N -1.045 6.045
7 S 2.735 3.265
8 O -0.998 6.998
9 O -0.998 6.998
10 C -1.023 5.023
11 H 0.101 0.899
12 C 0.132 3.868
13 N -0.847 5.847
14 Si 0.922 3.078
15 H -0.276 1.276
16 H -0.264 1.264
17 H -0.264 1.264
18 C 0.127 3.873
19 H 0.114 0.886
20 H 0.116 0.884
21 H 0.108 0.892
22 H 0.081 0.919
23 H 0.079 0.921
24 H 0.292 0.708
25 H 0.075 0.925
26 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.522 -2.562 -11.249 12.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.124 5.124
2 C -0.106 4.106
3 C -0.058 4.058
4 C -0.152 4.152
5 C 0.008 3.992
6 N -0.880 5.880
7 S 2.837 3.163
8 O -0.988 6.988
9 O -0.989 6.989
10 C -1.156 5.156
11 H 0.119 0.881
12 C -0.086 4.086
13 N -0.476 5.476
14 Si 0.745 3.255
15 H -0.201 1.201
16 H -0.188 1.188
17 H -0.189 1.189
18 C 0.001 3.999
19 H 0.132 0.868
20 H 0.134 0.866
21 H 0.126 0.874
22 H 0.099 0.901
23 H 0.098 0.902
24 H 0.102 0.898
25 H 0.094 0.906
26 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -5.169 -2.915 -9.982 11.613
hybrid contribution 1.533 1.155 -0.571 2.002
sum -3.636 -1.760 -10.553 11.300
Atomic orbital electron populations
1.81222 1.13234 1.09173 1.08723 1.29253 0.95341 0.92951 0.93014
1.19326 0.81433 1.06141 0.98887 1.23155 0.97760 1.00125 0.94140
1.22307 0.93082 0.94021 0.89794 1.60779 1.40297 1.46728 1.40169
0.99959 0.72610 0.74140 0.69596 1.93361 1.73500 1.50421 1.81563
1.93363 1.68639 1.76836 1.60042 1.30639 1.34162 1.45025 1.05804
0.88056 1.24771 0.96141 0.94490 0.93208 1.69884 1.35398 1.39500
1.02849 0.86187 0.79796 0.80504 0.78977 1.20089 1.18837 1.18871
1.22382 0.86747 0.94591 0.96200 0.86791 0.86649 0.87391 0.90119
0.90214 0.89768 0.90641 0.90235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -6.05 18.54 42.15 0.78 -5.27 15
2 C 0.21 2.16 15.41 -20.76 -0.32 1.84 15
3 C -0.02 -0.11 5.62 -29.52 -0.17 -0.28 15
4 C -0.13 -1.36 3.95 -90.24 -0.36 -1.71 15
5 C 0.13 1.75 8.32 -8.49 -0.07 1.68 15
6 N -1.05 -19.69 4.24 -125.30 -0.53 -20.22 15
7 S 2.73 71.79 5.55 -107.50 -0.60 71.19 15
8 O -1.00 -28.81 18.02 -57.17 -1.03 -29.84 15
9 O -1.00 -29.20 18.02 -57.17 -1.03 -30.23 15
10 C -1.02 -27.82 9.75 30.60 0.30 -27.52 15
11 H 0.10 2.49 7.81 -52.49 -0.41 2.08 15
12 C 0.13 3.65 5.46 -17.82 -0.10 3.56 15
13 N -0.85 -24.82 13.19 55.43 0.73 -24.09 15
14 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 15
15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15
16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15
17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15
18 C 0.13 1.79 8.29 -8.63 -0.07 1.72 15
19 H 0.11 0.52 7.81 -51.93 -0.41 0.12 15
20 H 0.12 0.44 8.14 -51.93 -0.42 0.02 15
21 H 0.11 1.15 8.11 -51.93 -0.42 0.73 15
22 H 0.08 0.82 8.10 -51.93 -0.42 0.40 15
23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15
24 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15
25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15
26 H 0.08 0.91 7.88 -51.93 -0.41 0.50 15
LS Contribution 257.66 15.07 3.88 3.88
Total: -1.00 -37.26 257.66 -6.07 -43.32
By element:
Atomic # 1 Polarization: -0.85 SS G_CDS: -2.47 Total: -3.32 kcal
Atomic # 6 Polarization: -19.93 SS G_CDS: -0.78 Total: -20.72 kcal
Atomic # 7 Polarization: -50.56 SS G_CDS: 0.98 Total: -49.58 kcal
Atomic # 8 Polarization: -58.01 SS G_CDS: -2.06 Total: -60.07 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal
Atomic # 16 Polarization: 71.79 SS G_CDS: -0.60 Total: 71.19 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -37.26 -6.07 -43.32 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192933421.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.771 kcal
(2) G-P(sol) polarization free energy of solvation -37.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds