Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47267 * 271.13070 * 3 2 1 5 5 C 1.53500 * 114.20830 * 174.99954 * 4 3 2 6 6 N 1.47068 * 87.98269 * 139.65516 * 5 4 3 7 7 S 1.65602 * 136.05449 * 152.84819 * 6 5 4 8 8 O 1.42104 * 106.40275 * 336.45858 * 7 6 5 9 9 O 1.42096 * 106.40308 * 203.53797 * 7 6 5 10 10 C 1.76201 * 107.21768 * 89.99823 * 7 6 5 11 11 H 1.08000 * 120.00595 * 359.97438 * 10 7 6 12 12 C 1.37885 * 119.99870 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47064 * 87.88926 * 333.10048 * 6 5 4 19 19 H 1.09001 * 109.46854 * 151.12773 * 3 2 1 20 20 H 1.08997 * 109.46889 * 31.13398 * 3 2 1 21 21 H 1.08997 * 113.28113 * 41.93388 * 4 3 2 22 22 H 1.09000 * 113.46119 * 24.87919 * 5 4 3 23 23 H 1.08998 * 113.46832 * 254.44046 * 5 4 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 25 25 H 1.09001 * 113.46577 * 141.67633 * 18 6 5 26 26 H 1.09001 * 113.47090 * 272.12000 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0276 1.4421 5 6 4.6428 -0.1514 1.5682 6 7 4.5783 0.8190 2.6714 7 16 5.4807 1.1540 4.0189 8 8 6.1826 -0.0394 4.3388 9 8 4.6117 1.8126 4.9302 10 6 6.6990 2.3373 3.5498 11 1 6.7397 2.6963 2.5320 12 6 7.6014 2.8043 4.4820 13 7 7.5523 2.3669 5.7213 14 14 8.8935 4.0583 3.9845 15 1 9.7344 4.3960 5.1610 16 1 9.7481 3.4894 2.9116 17 1 8.2248 5.2868 3.4856 18 6 3.3563 1.3568 2.0547 19 1 2.9709 0.9008 -0.4962 20 1 2.9717 -0.8788 -0.5313 21 1 2.5597 -0.7097 2.0833 22 1 5.1818 0.2182 0.6959 23 1 4.9735 -1.1421 1.8802 24 1 8.1874 2.6952 6.3769 25 1 2.5954 1.6459 2.7796 26 1 3.5493 2.1321 1.3133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933421.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -32.551234 kcal Electronic energy + Delta-G solvation = -13837.876229 eV Core-core repulsion = 11237.411693 eV Total energy + Delta-G solvation = -2600.464536 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36630 -36.50316 -35.22703 -33.99180 -33.10900 -31.49532 -26.24758 -25.86677 -25.66817 -20.38050 -18.79060 -17.80559 -17.27181 -16.28191 -15.48871 -15.10311 -14.77326 -14.32604 -13.89654 -13.60882 -13.00000 -12.69316 -12.44134 -12.15438 -12.05102 -11.72427 -11.40725 -11.22184 -11.19511 -10.64585 -10.35369 -10.32262 -10.21542 -10.16177 -9.26338 -9.01872 -8.31622 -6.71952 -5.34708 2.13765 2.71315 2.73747 3.06463 3.10989 3.16029 3.86757 4.01993 4.43512 4.48624 4.61570 4.89913 5.15239 5.29017 5.45988 5.56147 5.61128 5.77537 5.87304 5.91459 6.03854 6.38241 7.06662 7.23434 7.32787 7.51213 7.94734 8.86311 10.21669 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.048106 B = 0.007028 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.910871 B = 3983.149521 C = 4184.384367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.212 3.788 3 C -0.017 4.017 4 C -0.130 4.130 5 C 0.135 3.865 6 N -1.045 6.045 7 S 2.735 3.265 8 O -0.998 6.998 9 O -0.998 6.998 10 C -1.023 5.023 11 H 0.101 0.899 12 C 0.132 3.868 13 N -0.847 5.847 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.264 1.264 17 H -0.264 1.264 18 C 0.127 3.873 19 H 0.114 0.886 20 H 0.116 0.884 21 H 0.108 0.892 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.292 0.708 25 H 0.075 0.925 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -2.562 -11.249 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.106 4.106 3 C -0.058 4.058 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.880 5.880 7 S 2.837 3.163 8 O -0.988 6.988 9 O -0.989 6.989 10 C -1.156 5.156 11 H 0.119 0.881 12 C -0.086 4.086 13 N -0.476 5.476 14 Si 0.745 3.255 15 H -0.201 1.201 16 H -0.188 1.188 17 H -0.189 1.189 18 C 0.001 3.999 19 H 0.132 0.868 20 H 0.134 0.866 21 H 0.126 0.874 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.169 -2.915 -9.982 11.613 hybrid contribution 1.533 1.155 -0.571 2.002 sum -3.636 -1.760 -10.553 11.300 Atomic orbital electron populations 1.81222 1.13234 1.09173 1.08723 1.29253 0.95341 0.92951 0.93014 1.19326 0.81433 1.06141 0.98887 1.23155 0.97760 1.00125 0.94140 1.22307 0.93082 0.94021 0.89794 1.60779 1.40297 1.46728 1.40169 0.99959 0.72610 0.74140 0.69596 1.93361 1.73500 1.50421 1.81563 1.93363 1.68639 1.76836 1.60042 1.30639 1.34162 1.45025 1.05804 0.88056 1.24771 0.96141 0.94490 0.93208 1.69884 1.35398 1.39500 1.02849 0.86187 0.79796 0.80504 0.78977 1.20089 1.18837 1.18871 1.22382 0.86747 0.94591 0.96200 0.86791 0.86649 0.87391 0.90119 0.90214 0.89768 0.90641 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.05 18.54 42.15 0.78 -5.27 15 2 C 0.21 2.16 15.41 -20.76 -0.32 1.84 15 3 C -0.02 -0.11 5.62 -29.52 -0.17 -0.28 15 4 C -0.13 -1.36 3.95 -90.24 -0.36 -1.71 15 5 C 0.13 1.75 8.32 -8.49 -0.07 1.68 15 6 N -1.05 -19.69 4.24 -125.30 -0.53 -20.22 15 7 S 2.73 71.79 5.55 -107.50 -0.60 71.19 15 8 O -1.00 -28.81 18.02 -57.17 -1.03 -29.84 15 9 O -1.00 -29.20 18.02 -57.17 -1.03 -30.23 15 10 C -1.02 -27.82 9.75 30.60 0.30 -27.52 15 11 H 0.10 2.49 7.81 -52.49 -0.41 2.08 15 12 C 0.13 3.65 5.46 -17.82 -0.10 3.56 15 13 N -0.85 -24.82 13.19 55.43 0.73 -24.09 15 14 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 15 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 18 C 0.13 1.79 8.29 -8.63 -0.07 1.72 15 19 H 0.11 0.52 7.81 -51.93 -0.41 0.12 15 20 H 0.12 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.11 1.15 8.11 -51.93 -0.42 0.73 15 22 H 0.08 0.82 8.10 -51.93 -0.42 0.40 15 23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.08 0.91 7.88 -51.93 -0.41 0.50 15 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -37.26 257.66 -6.07 -43.32 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -2.47 Total: -3.32 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.78 Total: -20.72 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.98 Total: -49.58 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -2.06 Total: -60.07 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 71.79 SS G_CDS: -0.60 Total: 71.19 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -37.26 -6.07 -43.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933421.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.771 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds