Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47267 * 271.13070 * 3 2 1 5 5 C 1.53500 * 114.20830 * 174.99954 * 4 3 2 6 6 N 1.47068 * 87.98269 * 139.65516 * 5 4 3 7 7 S 1.65602 * 136.05449 * 152.84819 * 6 5 4 8 8 O 1.42104 * 106.40275 * 336.45858 * 7 6 5 9 9 O 1.42096 * 106.40308 * 203.53797 * 7 6 5 10 10 C 1.76201 * 107.21768 * 89.99823 * 7 6 5 11 11 H 1.08000 * 120.00595 * 359.97438 * 10 7 6 12 12 C 1.37885 * 119.99870 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.47064 * 87.88926 * 333.10048 * 6 5 4 19 19 H 1.09001 * 109.46854 * 151.12773 * 3 2 1 20 20 H 1.08997 * 109.46889 * 31.13398 * 3 2 1 21 21 H 1.08997 * 113.28113 * 41.93388 * 4 3 2 22 22 H 1.09000 * 113.46119 * 24.87919 * 5 4 3 23 23 H 1.08998 * 113.46832 * 254.44046 * 5 4 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 25 25 H 1.09001 * 113.46577 * 141.67633 * 18 6 5 26 26 H 1.09001 * 113.47090 * 272.12000 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0276 1.4421 5 6 4.6428 -0.1514 1.5682 6 7 4.5783 0.8190 2.6714 7 16 5.4807 1.1540 4.0189 8 8 6.1826 -0.0394 4.3388 9 8 4.6117 1.8126 4.9302 10 6 6.6990 2.3373 3.5498 11 1 6.7397 2.6963 2.5320 12 6 7.6014 2.8043 4.4820 13 7 7.5523 2.3669 5.7213 14 14 8.8935 4.0583 3.9845 15 1 9.7344 4.3960 5.1610 16 1 9.7481 3.4894 2.9116 17 1 8.2248 5.2868 3.4856 18 6 3.3563 1.3568 2.0547 19 1 2.9709 0.9008 -0.4962 20 1 2.9717 -0.8788 -0.5313 21 1 2.5597 -0.7097 2.0833 22 1 5.1818 0.2182 0.6959 23 1 4.9735 -1.1421 1.8802 24 1 8.1874 2.6952 6.3769 25 1 2.5954 1.6459 2.7796 26 1 3.5493 2.1321 1.3133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933421.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = -63.267004 kcal Electronic energy + Delta-G solvation = -13839.208165 eV Core-core repulsion = 11237.411693 eV Total energy + Delta-G solvation = -2601.796472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44964 -37.40283 -37.37473 -36.13627 -35.17079 -32.40822 -28.26165 -27.09374 -26.75908 -21.49559 -20.66108 -19.03287 -18.52052 -18.16229 -17.00400 -16.61050 -16.19053 -15.75720 -15.32793 -14.81383 -14.40774 -13.99560 -13.60843 -13.58208 -13.32222 -13.17145 -12.98539 -12.72305 -12.51762 -12.46196 -12.32255 -12.17129 -11.62141 -11.23114 -11.22039 -10.98947 -9.75547 -8.72817 -7.47937 0.27904 1.34730 1.37228 1.50224 1.91669 1.98881 2.21294 2.58291 2.91007 3.12333 3.58215 3.79835 4.11284 4.12031 4.20297 4.42599 4.78038 4.82546 4.89598 4.97896 5.04779 5.24982 5.46290 5.54343 5.74688 5.99751 6.77331 6.78986 8.21344 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.048106 B = 0.007028 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.910871 B = 3983.149521 C = 4184.384367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.239 3.761 3 C -0.004 4.004 4 C -0.103 4.103 5 C 0.128 3.872 6 N -1.063 6.063 7 S 2.739 3.261 8 O -1.040 7.040 9 O -1.046 7.046 10 C -1.044 5.044 11 H 0.123 0.877 12 C 0.066 3.934 13 N -0.898 5.898 14 Si 0.992 3.008 15 H -0.267 1.267 16 H -0.246 1.246 17 H -0.250 1.250 18 C 0.112 3.888 19 H 0.150 0.850 20 H 0.159 0.841 21 H 0.101 0.899 22 H 0.121 0.879 23 H 0.076 0.924 24 H 0.298 0.702 25 H 0.056 0.944 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -1.980 -14.299 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.077 4.077 3 C -0.044 4.044 4 C -0.125 4.125 5 C 0.003 3.997 6 N -0.903 5.903 7 S 2.844 3.156 8 O -1.030 7.030 9 O -1.037 7.037 10 C -1.177 5.177 11 H 0.141 0.859 12 C -0.146 4.146 13 N -0.530 5.530 14 Si 0.810 3.190 15 H -0.191 1.191 16 H -0.170 1.170 17 H -0.174 1.174 18 C -0.013 4.013 19 H 0.167 0.833 20 H 0.177 0.823 21 H 0.119 0.881 22 H 0.139 0.861 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.321 -2.351 -13.034 13.931 hybrid contribution 1.191 0.918 0.305 1.534 sum -3.130 -1.433 -12.729 13.186 Atomic orbital electron populations 1.81264 1.15516 1.11717 1.10689 1.29863 0.95860 0.90849 0.91113 1.19559 0.78661 1.09945 0.96252 1.22876 0.96118 0.97034 0.96469 1.22812 0.95253 0.92796 0.88819 1.60188 1.40933 1.48819 1.40392 0.99208 0.72407 0.73301 0.70702 1.93292 1.74777 1.51584 1.83381 1.93289 1.69513 1.77569 1.63280 1.31077 1.34463 1.45265 1.06918 0.85901 1.26098 0.98816 0.96765 0.92964 1.69998 1.37003 1.41547 1.04462 0.85137 0.76807 0.77722 0.79353 1.19102 1.16980 1.17385 1.22921 0.84208 0.97798 0.96363 0.83289 0.82348 0.88115 0.86082 0.90566 0.89158 0.92528 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.22 18.54 20.01 0.37 -12.85 15 2 C 0.24 4.12 15.41 89.44 1.38 5.50 15 3 C 0.00 -0.03 5.62 28.79 0.16 0.13 15 4 C -0.10 -1.79 3.95 -10.55 -0.04 -1.83 15 5 C 0.13 2.91 8.32 83.19 0.69 3.60 15 6 N -1.06 -38.98 4.24 -550.34 -2.33 -41.31 15 7 S 2.74 147.07 5.55 -56.49 -0.31 146.76 15 8 O -1.04 -62.05 18.02 -128.00 -2.31 -64.36 15 9 O -1.05 -63.75 18.02 -128.00 -2.31 -66.06 15 10 C -1.04 -56.67 9.75 67.74 0.66 -56.01 15 11 H 0.12 5.85 7.81 -2.91 -0.02 5.83 15 12 C 0.07 3.65 5.46 84.66 0.46 4.11 15 13 N -0.90 -54.00 13.19 21.45 0.28 -53.72 15 14 Si 0.99 40.57 29.54 68.60 2.03 42.59 15 15 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 16 H -0.25 -9.29 7.11 99.48 0.71 -8.59 15 17 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 18 C 0.11 2.91 8.29 83.10 0.69 3.60 15 19 H 0.15 0.32 7.81 -2.39 -0.02 0.30 15 20 H 0.16 0.10 8.14 -2.39 -0.02 0.08 15 21 H 0.10 1.94 8.11 -2.39 -0.02 1.92 15 22 H 0.12 1.81 8.10 -2.39 -0.02 1.79 15 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.30 16.13 8.31 -92.71 -0.77 15.36 15 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 26 H 0.11 2.16 7.88 -2.39 -0.02 2.14 15 Total: -1.00 -86.72 257.66 0.62 -86.10 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.19 Total: 3.74 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.00 Total: -40.90 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -1.68 Total: -107.88 kcal Atomic # 8 Polarization: -125.81 SS G_CDS: -4.61 Total: -130.42 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 147.07 SS G_CDS: -0.31 Total: 146.76 kcal Total: -86.72 0.62 -86.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933421.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.836 kcal (2) G-P(sol) polarization free energy of solvation -86.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds