Wall clock time and date at job start Sun Mar 29 2020 21:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46842 * 2 1 4 4 N 1.27939 * 119.99698 * 125.00658 * 3 2 1 5 5 Si 1.86801 * 119.99918 * 304.99906 * 3 2 1 6 6 H 1.48494 * 109.46906 * 90.00497 * 5 3 2 7 7 H 1.48503 * 109.46901 * 210.00438 * 5 3 2 8 8 H 1.48496 * 109.47304 * 330.00404 * 5 3 2 9 9 S 1.81397 * 109.46909 * 120.00118 * 2 1 3 10 10 O 1.42101 * 110.54417 * 308.37124 * 9 2 1 11 11 O 1.42101 * 110.53840 * 171.62444 * 9 2 1 12 12 N 1.65593 * 104.45135 * 60.00068 * 9 2 1 13 13 C 1.46500 * 120.00311 * 64.99844 * 12 9 2 14 14 H 1.09005 * 110.34254 * 337.28653 * 13 12 9 15 15 C 1.54632 * 110.38830 * 215.00071 * 13 12 9 16 16 H 1.09002 * 109.46911 * 21.29939 * 15 13 12 17 17 C 1.54630 * 101.40775 * 265.70553 * 15 13 12 18 18 C 1.51107 * 104.72605 * 335.36562 * 17 15 13 19 19 C 1.30519 * 111.10429 * 16.43630 * 18 17 15 20 20 H 1.09001 * 109.47097 * 60.00018 * 1 2 3 21 21 H 1.09002 * 109.47189 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47167 * 299.99957 * 1 2 3 23 23 H 1.09007 * 109.46690 * 240.00265 * 2 1 3 24 24 H 0.97001 * 119.99597 * 179.97438 * 4 3 2 25 25 H 0.97002 * 119.99654 * 244.99521 * 12 9 2 26 26 H 1.09002 * 110.38578 * 94.17755 * 17 15 13 27 27 H 1.08997 * 110.38641 * 216.55518 * 17 15 13 28 28 H 1.08000 * 124.44715 * 196.39492 * 18 17 15 29 29 H 1.07999 * 124.44943 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.8448 1.8121 0.9076 5 14 1.4688 2.6107 -1.3252 6 1 0.2383 3.3083 -0.8733 7 1 2.5380 3.6089 -1.5813 8 1 1.1822 1.8608 -2.5744 9 16 2.1346 -0.8552 1.4811 10 8 1.5221 -0.3245 2.6483 11 8 3.5420 -1.0386 1.4112 12 7 1.5165 -2.3862 1.3556 13 6 1.9457 -3.2622 0.2626 14 1 2.3289 -2.6707 -0.5690 15 6 0.7721 -4.1533 -0.2062 16 1 -0.1720 -3.6961 0.0900 17 6 1.0085 -5.4340 0.6276 18 6 2.4859 -5.4186 0.9447 19 6 2.9970 -4.2342 0.7456 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 3.1684 2.7265 0.9073 25 1 0.8702 -2.7031 2.0058 26 1 0.4227 -5.4025 1.5462 27 1 0.7546 -6.3190 0.0443 28 1 3.0453 -6.2750 1.2912 29 1 4.0350 -3.9822 0.9047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193185557.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:07 Heat of formation + Delta-G solvation = -24.274383 kcal Electronic energy + Delta-G solvation = -14943.398115 eV Core-core repulsion = 12381.406923 eV Total energy + Delta-G solvation = -2561.991193 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 231.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -36.64456 -36.58612 -35.98950 -34.88411 -32.43682 -31.45914 -26.14353 -24.85978 -24.42346 -20.67441 -18.17544 -18.14884 -17.52025 -17.10012 -16.19597 -15.47034 -15.00294 -14.53655 -14.13680 -13.65932 -13.33787 -13.09245 -12.57850 -11.92557 -11.69609 -11.56403 -11.31769 -11.28533 -11.13123 -11.02302 -10.71687 -10.55237 -10.18765 -10.00839 -9.04539 -8.84809 -8.54889 -7.95624 -7.70103 -3.91300 1.11445 1.63186 1.96432 2.19216 2.52353 2.68732 3.50124 4.03652 4.33145 4.73730 4.85769 5.29791 5.57457 5.69735 5.96881 6.05922 6.32592 6.36158 6.44638 6.58194 6.98902 7.24052 7.38099 7.53702 7.65432 7.85598 8.13251 8.42171 8.72605 8.76894 9.08623 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.040188 B = 0.009828 C = 0.009031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.560656 B = 2848.442080 C = 3099.560443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.573 4.573 3 C 0.019 3.981 4 N -0.652 5.652 5 Si 0.949 3.051 6 H -0.235 1.235 7 H -0.248 1.248 8 H -0.225 1.225 9 S 2.596 3.404 10 O -0.989 6.989 11 O -0.967 6.967 12 N -1.105 6.105 13 C 0.199 3.801 14 H 0.044 0.956 15 C -0.583 4.583 16 H -0.025 1.025 17 C -0.061 4.061 18 C -0.161 4.161 19 C -0.181 4.181 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.069 0.931 23 H 0.157 0.843 24 H 0.350 0.650 25 H 0.396 0.604 26 H -0.012 1.012 27 H 0.028 0.972 28 H 0.087 0.913 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 11.201 -3.618 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.679 4.679 3 C -0.229 4.229 4 N -0.268 5.268 5 Si 0.764 3.236 6 H -0.158 1.158 7 H -0.171 1.171 8 H -0.147 1.147 9 S 2.691 3.309 10 O -0.979 6.979 11 O -0.956 6.956 12 N -0.866 5.866 13 C 0.099 3.901 14 H 0.062 0.938 15 C -0.614 4.614 16 H -0.007 1.007 17 C -0.097 4.097 18 C -0.180 4.180 19 C -0.201 4.201 20 H 0.089 0.911 21 H 0.112 0.888 22 H 0.088 0.912 23 H 0.174 0.826 24 H 0.168 0.832 25 H 0.228 0.772 26 H 0.006 0.994 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.345 11.898 -2.762 12.219 hybrid contribution -0.301 0.555 1.126 1.291 sum 0.044 12.454 -1.636 12.561 Atomic orbital electron populations 1.21484 0.88953 1.05428 1.03173 1.29737 1.07331 1.03789 1.27039 1.29870 0.93020 1.00127 0.99862 1.68072 1.09546 1.24249 1.24886 0.85473 0.81418 0.77754 0.78981 1.15833 1.17127 1.14712 1.06053 0.75072 0.74671 0.75115 1.93411 1.78391 1.80994 1.45144 1.93462 1.30816 1.84859 1.86504 1.57684 1.59325 1.28074 1.41517 1.21122 0.97477 0.89328 0.82153 0.93763 1.41352 0.85308 0.84123 1.50611 1.00657 1.21075 0.89511 1.04096 0.95056 1.23387 0.98917 0.96105 0.99601 1.23783 0.97869 0.97226 1.01252 0.91101 0.88763 0.91228 0.82594 0.83168 0.77163 0.99384 0.95367 0.89492 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.62 37.16 0.32 -1.73 15 2 C -0.57 -10.12 2.90 -27.88 -0.08 -10.20 15 3 C 0.02 0.30 5.33 -13.90 -0.07 0.23 15 4 N -0.65 -10.91 12.40 56.23 0.70 -10.21 15 5 Si 0.95 10.33 27.80 -169.99 -4.73 5.61 15 6 H -0.24 -2.43 7.11 56.52 0.40 -2.03 15 7 H -0.25 -2.49 7.11 56.52 0.40 -2.09 15 8 H -0.23 -2.40 7.11 56.52 0.40 -2.00 15 9 S 2.60 58.97 3.88 -107.50 -0.42 58.56 15 10 O -0.99 -24.13 17.96 -57.54 -1.03 -25.17 15 11 O -0.97 -24.68 17.70 -57.54 -1.02 -25.70 15 12 N -1.11 -26.85 5.03 -4.97 -0.02 -26.87 15 13 C 0.20 5.26 3.32 -68.03 -0.23 5.03 15 14 H 0.04 1.12 7.26 -51.93 -0.38 0.74 15 15 C -0.58 -16.96 12.12 -25.02 -0.30 -17.27 15 16 H -0.03 -0.76 8.01 -51.93 -0.42 -1.17 15 17 C -0.06 -1.68 6.81 -26.83 -0.18 -1.86 15 18 C -0.16 -4.12 10.77 -35.69 -0.38 -4.51 15 19 C -0.18 -4.76 10.41 -35.69 -0.37 -5.13 15 20 H 0.07 0.86 6.65 -51.93 -0.35 0.52 15 21 H 0.09 1.60 7.91 -51.93 -0.41 1.19 15 22 H 0.07 1.04 8.11 -51.93 -0.42 0.62 15 23 H 0.16 2.52 7.51 -51.92 -0.39 2.13 15 24 H 0.35 4.48 8.23 -40.82 -0.34 4.14 15 25 H 0.40 9.56 8.83 -34.46 -0.30 9.26 15 26 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 15 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.09 1.95 8.06 -52.49 -0.42 1.53 15 29 H 0.09 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -33.65 261.30 -7.38 -41.02 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -3.49 Total: 14.26 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -1.30 Total: -35.44 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.67 Total: -37.08 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.05 Total: -50.87 kcal Atomic # 14 Polarization: 10.33 SS G_CDS: -4.73 Total: 5.61 kcal Atomic # 16 Polarization: 58.97 SS G_CDS: -0.42 Total: 58.56 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.65 -7.38 -41.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193185557.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.750 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds