Wall clock time and date at job start Sun Mar 29 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47696 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47026 * 119.99902 * 3 2 1 7 7 C 1.38867 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00566 * 179.97438 * 7 2 1 9 9 N 1.37072 * 119.99695 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00337 * 179.97438 * 9 7 2 11 11 S 1.71201 * 119.99673 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00281 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00037 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47316 * 180.02562 * 13 12 10 15 15 H 1.08999 * 110.33077 * 57.74767 * 14 13 12 16 16 C 1.54477 * 110.37308 * 180.02562 * 14 13 12 17 17 C 1.54507 * 104.06510 * 142.80822 * 16 14 13 18 18 C 1.54483 * 104.06211 * 359.97438 * 17 16 14 19 19 O 1.44428 * 104.89902 * 335.96812 * 18 17 16 20 20 H 0.96999 * 120.00080 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00467 * 359.97438 * 9 7 2 22 22 H 0.96998 * 119.99809 * 0.02562 * 12 10 9 23 23 H 1.09000 * 109.47057 * 60.00168 * 13 12 10 24 24 H 1.09008 * 109.47505 * 300.00671 * 13 12 10 25 25 H 1.09000 * 110.51486 * 24.16264 * 16 14 13 26 26 H 1.09000 * 110.62726 * 261.50882 * 16 14 13 27 27 H 1.09005 * 110.51421 * 241.35469 * 17 16 14 28 28 H 1.09004 * 110.63217 * 118.69765 * 17 16 14 29 29 H 1.09002 * 110.37322 * 94.85326 * 18 17 16 30 30 H 1.08999 * 110.37312 * 217.08002 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.1025 1.6966 -1.2124 5 1 1.2837 2.7465 0.0006 6 1 3.1025 1.6964 1.2126 7 6 2.0092 -1.2026 -0.0005 8 1 3.0892 -1.2026 -0.0010 9 7 1.3239 -2.3897 -0.0016 10 6 1.9978 -3.5569 -0.0026 11 16 3.7098 -3.5568 -0.0020 12 7 1.3239 -4.7241 -0.0032 13 6 2.0564 -5.9928 -0.0049 14 6 1.0623 -7.1558 -0.0058 15 1 0.4013 -7.0882 -0.8698 16 6 1.8136 -8.5055 -0.0069 17 6 0.9530 -9.4150 0.8983 18 6 -0.2161 -8.5070 1.3399 19 8 0.2935 -7.1609 1.2203 20 1 -0.4850 0.8400 0.0004 21 1 0.3539 -2.3898 -0.0016 22 1 0.3540 -4.7241 -0.0032 23 1 2.6838 -6.0513 0.8846 24 1 2.6826 -6.0497 -0.8954 25 1 2.8132 -8.3866 0.4110 26 1 1.8687 -8.9135 -1.0162 27 1 1.5272 -9.7457 1.7639 28 1 0.5804 -10.2726 0.3381 29 1 -1.0747 -8.6474 0.6832 30 1 -0.4912 -8.7181 2.3732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200031335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:38 Heat of formation + Delta-G solvation = -44.753522 kcal Electronic energy + Delta-G solvation = -13820.137049 eV Core-core repulsion = 11354.976476 eV Total energy + Delta-G solvation = -2465.160573 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.52296 -37.55471 -34.84269 -32.29970 -32.02891 -29.87339 -25.97299 -24.40492 -22.26984 -21.95485 -20.96593 -18.64305 -17.35001 -16.56462 -15.62676 -15.57568 -15.23408 -14.61040 -13.84160 -13.75181 -13.60505 -13.55912 -12.18822 -12.03938 -11.88107 -11.80470 -11.35668 -11.22557 -10.99951 -10.73086 -10.72822 -10.47748 -9.83950 -9.79153 -9.43162 -8.28270 -6.87597 -6.60632 -6.03432 -4.17172 2.71665 3.12898 3.17356 3.27903 3.47061 3.81219 3.91970 4.16822 4.49018 4.70332 4.80702 4.91547 5.04576 5.15719 5.18653 5.40298 5.46410 5.57038 5.66663 5.83602 5.94031 6.09458 6.34208 6.79322 7.19497 7.33553 7.41634 8.18507 8.47067 8.96827 9.13343 10.26796 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.052348 B = 0.005597 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.754076 B = 5001.521800 C = 5423.586145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.289 4.289 8 H 0.143 0.857 9 N -0.473 5.473 10 C 0.464 3.536 11 S -0.766 6.766 12 N -0.715 5.715 13 C 0.156 3.844 14 C 0.060 3.940 15 H 0.071 0.929 16 C -0.145 4.145 17 C -0.154 4.154 18 C 0.042 3.958 19 O -0.366 6.366 20 H 0.282 0.718 21 H 0.393 0.607 22 H 0.385 0.615 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -13.618 -0.083 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.423 4.423 8 H 0.161 0.839 9 N -0.077 5.077 10 C 0.101 3.899 11 S -0.642 6.642 12 N -0.354 5.354 13 C 0.031 3.969 14 C 0.001 3.999 15 H 0.089 0.911 16 C -0.184 4.184 17 C -0.192 4.192 18 C -0.035 4.035 19 O -0.285 6.285 20 H 0.092 0.908 21 H 0.228 0.772 22 H 0.219 0.781 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.373 -13.197 0.065 13.621 hybrid contribution -1.680 0.533 -0.123 1.767 sum -5.053 -12.663 -0.058 13.634 Atomic orbital electron populations 1.69666 1.06555 1.29909 1.45254 1.25690 0.95757 1.01096 0.95062 0.85586 0.78727 0.78147 0.80110 1.18924 1.20702 1.18916 1.20718 0.95693 0.80102 1.45810 0.83935 1.41035 1.08898 1.03905 1.53829 1.20904 0.93819 0.80770 0.94362 1.92388 0.93809 1.95338 1.82685 1.43965 1.07737 1.03588 1.80065 1.21310 0.92463 0.79080 1.04072 1.23443 0.92878 0.95520 0.88023 0.91072 1.22872 1.00515 0.94189 1.00785 1.22931 0.97345 0.98710 1.00210 1.23379 0.95814 0.82440 1.01839 1.89300 1.68854 1.28664 1.41678 0.90753 0.77158 0.78078 0.90282 0.89745 0.89788 0.90248 0.90607 0.90691 0.92532 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.37 13.05 55.49 0.72 -21.65 16 2 C 0.03 0.80 5.50 -17.47 -0.10 0.70 16 3 Si 0.95 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.29 -7.75 9.51 -14.98 -0.14 -7.89 16 8 H 0.14 4.08 6.22 -52.49 -0.33 3.76 16 9 N -0.47 -11.81 5.29 -12.53 -0.07 -11.87 16 10 C 0.46 11.26 7.94 -86.91 -0.69 10.57 16 11 S -0.77 -21.15 27.15 -107.50 -2.92 -24.07 16 12 N -0.72 -13.85 5.52 -62.03 -0.34 -14.20 16 13 C 0.16 2.62 4.74 -4.05 -0.02 2.60 16 14 C 0.06 0.77 3.33 -25.96 -0.09 0.68 16 15 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.15 -1.47 6.63 -25.17 -0.17 -1.64 16 17 C -0.15 -1.34 7.09 -25.16 -0.18 -1.52 16 18 C 0.04 0.43 7.62 37.94 0.29 0.72 16 19 O -0.37 -5.20 11.33 -35.23 -0.40 -5.60 16 20 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 21 H 0.39 9.29 7.91 -40.82 -0.32 8.97 16 22 H 0.38 6.65 8.49 -40.82 -0.35 6.30 16 23 H 0.08 1.49 7.99 -51.93 -0.41 1.08 16 24 H 0.08 1.46 7.99 -51.92 -0.42 1.05 16 25 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 269.22 15.07 4.06 4.06 Total: -1.00 -31.36 269.22 -8.97 -40.32 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -3.91 Total: 13.68 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.09 Total: 4.23 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.32 Total: -47.72 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.40 Total: -5.60 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -21.15 SS G_CDS: -2.92 Total: -24.07 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.36 -8.97 -40.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200031335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.430 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds