Wall clock time and date at job start Sun Mar 29 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47696 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47026 * 119.99902 * 3 2 1 7 7 C 1.38867 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00566 * 179.97438 * 7 2 1 9 9 N 1.37072 * 119.99695 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00337 * 179.97438 * 9 7 2 11 11 S 1.71201 * 119.99673 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00281 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00037 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47316 * 180.02562 * 13 12 10 15 15 H 1.08999 * 110.33077 * 57.74767 * 14 13 12 16 16 C 1.54477 * 110.37308 * 180.02562 * 14 13 12 17 17 C 1.54507 * 104.06510 * 142.80822 * 16 14 13 18 18 C 1.54483 * 104.06211 * 359.97438 * 17 16 14 19 19 O 1.44428 * 104.89902 * 335.96812 * 18 17 16 20 20 H 0.96999 * 120.00080 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00467 * 359.97438 * 9 7 2 22 22 H 0.96998 * 119.99809 * 0.02562 * 12 10 9 23 23 H 1.09000 * 109.47057 * 60.00168 * 13 12 10 24 24 H 1.09008 * 109.47505 * 300.00671 * 13 12 10 25 25 H 1.09000 * 110.51486 * 24.16264 * 16 14 13 26 26 H 1.09000 * 110.62726 * 261.50882 * 16 14 13 27 27 H 1.09005 * 110.51421 * 241.35469 * 17 16 14 28 28 H 1.09004 * 110.63217 * 118.69765 * 17 16 14 29 29 H 1.09002 * 110.37322 * 94.85326 * 18 17 16 30 30 H 1.08999 * 110.37312 * 217.08002 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.1025 1.6966 -1.2124 5 1 1.2837 2.7465 0.0006 6 1 3.1025 1.6964 1.2126 7 6 2.0092 -1.2026 -0.0005 8 1 3.0892 -1.2026 -0.0010 9 7 1.3239 -2.3897 -0.0016 10 6 1.9978 -3.5569 -0.0026 11 16 3.7098 -3.5568 -0.0020 12 7 1.3239 -4.7241 -0.0032 13 6 2.0564 -5.9928 -0.0049 14 6 1.0623 -7.1558 -0.0058 15 1 0.4013 -7.0882 -0.8698 16 6 1.8136 -8.5055 -0.0069 17 6 0.9530 -9.4150 0.8983 18 6 -0.2161 -8.5070 1.3399 19 8 0.2935 -7.1609 1.2203 20 1 -0.4850 0.8400 0.0004 21 1 0.3539 -2.3898 -0.0016 22 1 0.3540 -4.7241 -0.0032 23 1 2.6838 -6.0513 0.8846 24 1 2.6826 -6.0497 -0.8954 25 1 2.8132 -8.3866 0.4110 26 1 1.8687 -8.9135 -1.0162 27 1 1.5272 -9.7457 1.7639 28 1 0.5804 -10.2726 0.3381 29 1 -1.0747 -8.6474 0.6832 30 1 -0.4912 -8.7181 2.3732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200031335.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:38 Heat of formation + Delta-G solvation = -66.258704 kcal Electronic energy + Delta-G solvation = -13821.069584 eV Core-core repulsion = 11354.976476 eV Total energy + Delta-G solvation = -2466.093107 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55443 -39.35143 -36.56217 -34.01990 -33.03645 -31.10654 -27.58424 -25.86722 -24.13466 -22.94214 -21.94039 -20.57431 -19.07445 -17.64798 -17.10489 -16.78484 -16.56510 -16.23980 -15.58373 -15.25229 -15.20540 -14.57097 -13.69396 -13.67018 -13.19894 -12.78997 -12.77095 -12.62724 -12.26345 -12.13735 -12.08271 -11.92551 -11.48283 -11.25228 -10.76402 -10.09177 -8.81279 -8.74895 -8.23662 -6.21093 0.80401 1.39841 1.48887 1.56482 1.57821 2.12043 2.42090 2.90669 2.93443 3.32468 3.62198 3.81730 3.99912 4.20050 4.22672 4.46524 4.61070 4.74716 4.87132 4.95071 4.99268 5.14177 5.19535 5.25906 5.40651 5.67992 5.89988 6.44097 6.49912 6.97346 7.18311 8.33309 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.052348 B = 0.005597 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.754076 B = 5001.521800 C = 5423.586145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.005 3.995 3 Si 1.009 2.991 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.120 0.880 9 N -0.474 5.474 10 C 0.475 3.525 11 S -0.827 6.827 12 N -0.696 5.696 13 C 0.156 3.844 14 C 0.067 3.933 15 H 0.088 0.912 16 C -0.144 4.144 17 C -0.147 4.147 18 C 0.034 3.966 19 O -0.399 6.399 20 H 0.291 0.709 21 H 0.399 0.601 22 H 0.400 0.600 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 -14.382 -0.379 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.201 4.201 3 Si 0.830 3.170 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.137 0.863 9 N -0.078 5.078 10 C 0.109 3.891 11 S -0.704 6.704 12 N -0.333 5.333 13 C 0.032 3.968 14 C 0.009 3.991 15 H 0.106 0.894 16 C -0.182 4.182 17 C -0.185 4.185 18 C -0.042 4.042 19 O -0.319 6.319 20 H 0.101 0.899 21 H 0.236 0.764 22 H 0.236 0.764 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.663 -14.008 -0.230 14.766 hybrid contribution -1.367 0.681 -0.009 1.528 sum -6.030 -13.327 -0.239 14.630 Atomic orbital electron populations 1.69688 1.07303 1.31179 1.44635 1.26443 0.96567 1.03338 0.93787 0.84736 0.77787 0.74760 0.79719 1.18986 1.18757 1.19176 1.20607 0.95060 0.81424 1.48642 0.86268 1.40955 1.09047 1.03728 1.54115 1.20671 0.92636 0.82043 0.93716 1.92464 0.97378 1.95848 1.84755 1.44020 1.08521 1.02969 1.77802 1.21414 0.93484 0.79310 1.02633 1.23391 0.92510 0.94839 0.88393 0.89419 1.22903 0.99904 0.92923 1.02491 1.22928 0.96446 0.98834 1.00258 1.23636 0.96749 0.80807 1.02986 1.89258 1.69276 1.31271 1.42114 0.89900 0.76425 0.76359 0.92630 0.90264 0.90761 0.88041 0.90408 0.88104 0.90942 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.56 13.05 21.65 0.28 -44.28 16 2 C 0.00 0.24 5.50 84.90 0.47 0.70 16 3 Si 1.01 40.58 29.55 68.60 2.03 42.61 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.32 -17.56 9.51 84.02 0.80 -16.76 16 8 H 0.12 7.02 6.22 -2.91 -0.02 7.00 16 9 N -0.47 -23.82 5.29 -193.56 -1.02 -24.84 16 10 C 0.47 23.26 7.94 179.05 1.42 24.69 16 11 S -0.83 -46.79 27.15 -56.49 -1.53 -48.32 16 12 N -0.70 -26.71 5.52 -350.17 -1.93 -28.64 16 13 C 0.16 5.21 4.74 86.38 0.41 5.62 16 14 C 0.07 1.60 3.33 31.10 0.10 1.71 16 15 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.14 -2.60 6.63 31.61 0.21 -2.39 16 17 C -0.15 -2.12 7.09 31.61 0.22 -1.89 16 18 C 0.03 0.61 7.62 72.49 0.55 1.16 16 19 O -0.40 -10.74 11.33 -148.98 -1.69 -12.43 16 20 H 0.29 13.43 8.31 -92.71 -0.77 12.66 16 21 H 0.40 18.82 7.91 -92.71 -0.73 18.09 16 22 H 0.40 13.37 8.49 -92.71 -0.79 12.58 16 23 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 24 H 0.08 2.75 7.99 -2.38 -0.02 2.73 16 25 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -67.69 269.22 -0.04 -67.73 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.36 Total: 35.33 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 4.19 Total: 12.84 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -2.68 Total: -97.76 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.69 Total: -12.43 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: -46.79 SS G_CDS: -1.53 Total: -48.32 kcal Total: -67.69 -0.04 -67.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200031335.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.471 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds