Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30929 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47283 * 240.00193 * 3 2 1 5 5 H 1.48502 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46930 * 120.00167 * 3 2 1 7 7 C 1.39826 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99705 * 192.74688 * 7 2 1 9 9 C 1.41089 * 119.99758 * 12.75037 * 7 2 1 10 10 C 1.40914 * 120.14250 * 207.60392 * 9 7 2 11 11 C 1.36292 * 119.83911 * 179.72716 * 10 9 7 12 12 C 1.39648 * 120.15768 * 0.22411 * 11 10 9 13 13 N 1.38662 * 119.85330 * 180.02562 * 12 11 10 14 14 C 1.40414 * 120.00222 * 145.57307 * 13 12 11 15 15 C 1.41868 * 128.07343 * 171.27895 * 14 13 12 16 16 N 1.30147 * 106.37918 * 179.97438 * 15 14 13 17 17 O 1.20886 * 111.78343 * 0.02562 * 16 15 14 18 18 C 1.34294 * 111.65388 * 359.74428 * 17 16 15 19 19 C 1.39650 * 120.29784 * 0.03021 * 12 11 10 20 20 C 1.36289 * 120.15994 * 359.96834 * 19 12 11 21 21 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.08308 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.92172 * 180.25340 * 11 10 9 24 24 H 0.97010 * 119.99765 * 325.57361 * 13 12 11 25 25 H 1.07996 * 126.80842 * 359.97221 * 15 14 13 26 26 H 1.08001 * 126.84139 * 180.28078 * 18 17 16 27 27 H 1.08006 * 119.91818 * 179.97438 * 19 12 11 28 28 H 1.07997 * 120.07762 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0970 1.6965 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0084 -1.2109 -0.0005 8 1 3.0685 -1.2224 0.2058 9 6 1.3291 -2.4176 -0.2708 10 6 1.8041 -3.6320 0.2633 11 6 1.1398 -4.7932 0.0029 12 6 -0.0063 -4.7821 -0.7949 13 7 -0.6775 -5.9672 -1.0553 14 6 -2.0760 -5.9690 -1.1808 15 6 -2.9147 -7.0306 -1.6077 16 7 -4.1333 -6.5756 -1.5650 17 8 -4.1705 -5.4277 -1.1877 18 6 -2.9431 -4.9552 -0.9163 19 6 -0.4794 -3.5829 -1.3317 20 6 0.1750 -2.4143 -1.0794 21 1 -0.4851 0.8400 0.0004 22 1 2.6901 -3.6420 0.8808 23 1 1.5004 -5.7242 0.4150 24 1 -0.1808 -6.7950 -1.1509 25 1 -2.6036 -8.0201 -1.9086 26 1 -2.6939 -3.9664 -0.5606 27 1 -1.3662 -3.5814 -1.9483 28 1 -0.1923 -1.4876 -1.4948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203237919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = 86.434060 kcal Electronic energy + Delta-G solvation = -14924.762721 eV Core-core repulsion = 12329.846917 eV Total energy + Delta-G solvation = -2594.915803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.41795 -38.31348 -35.72306 -33.52391 -32.29915 -30.47844 -29.64187 -28.54487 -24.93141 -22.93010 -21.86761 -21.02373 -20.14307 -17.73049 -17.44356 -17.07214 -16.18827 -15.93683 -15.19882 -14.01527 -13.78408 -13.37990 -12.85084 -12.59581 -12.23638 -12.17889 -11.71249 -11.30355 -11.14377 -10.96055 -10.85664 -10.52184 -9.92804 -9.74262 -9.54844 -9.25761 -8.06433 -7.70954 -6.81785 -6.67589 -4.33914 1.90774 2.49473 2.87221 2.93979 3.04444 3.06913 3.20359 3.49451 3.89909 4.20168 4.57236 4.80247 5.00327 5.56268 5.59057 6.05407 6.06696 6.14341 6.24164 6.76104 6.84015 6.97431 7.14990 7.31798 7.47548 7.64165 7.93163 8.03685 8.21758 8.31930 8.53831 8.63260 8.81868 8.88907 10.15994 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.045286 B = 0.006232 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.141260 B = 4491.716880 C = 5014.656196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.098 3.902 10 C -0.202 4.202 11 C -0.116 4.116 12 C 0.027 3.973 13 N -0.648 5.648 14 C 0.090 3.910 15 C -0.054 4.054 16 N -0.362 5.362 17 O 0.099 5.901 18 C -0.145 4.145 19 C -0.134 4.134 20 C -0.137 4.137 21 H 0.281 0.719 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.401 0.599 25 H 0.184 0.816 26 H 0.218 0.782 27 H 0.097 0.903 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 -5.482 -1.577 5.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.137 4.137 12 C -0.067 4.067 13 N -0.273 5.273 14 C -0.016 4.016 15 C -0.235 4.235 16 N -0.064 5.064 17 O 0.031 5.969 18 C -0.232 4.232 19 C -0.154 4.154 20 C -0.157 4.157 21 H 0.092 0.908 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.235 0.765 25 H 0.201 0.799 26 H 0.235 0.765 27 H 0.115 0.885 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.881 -5.721 -1.831 6.662 hybrid contribution 1.547 0.527 0.176 1.644 sum -1.334 -5.194 -1.655 5.612 Atomic orbital electron populations 1.69804 1.07396 1.29313 1.36053 1.25881 0.94844 1.01253 0.92387 0.86324 0.80031 0.80207 0.79905 1.18897 1.20319 1.19063 1.19471 0.96463 0.90760 1.42274 0.90512 1.17639 0.91649 0.92107 0.89097 1.20624 1.02907 0.92815 1.05906 1.20078 0.97164 0.97338 0.99101 1.17145 0.98008 0.84982 1.06570 1.40667 0.99779 1.09139 1.77713 1.18798 0.86928 0.94004 1.01831 1.24561 0.88716 1.01933 1.08251 1.73670 1.21900 0.94892 1.15910 1.84716 1.29853 1.20052 1.62290 1.25418 0.81807 1.02847 1.13132 1.20444 1.01062 0.92568 1.01349 1.21007 0.98143 0.96389 1.00137 0.90778 0.88560 0.89123 0.76498 0.79896 0.76540 0.88524 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.85 10.87 55.54 0.60 -19.25 15 2 C 0.07 1.77 5.22 -17.34 -0.09 1.68 15 3 Si 0.91 18.12 29.58 -169.99 -5.03 13.09 15 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.46 -11.67 9.04 -37.91 -0.34 -12.01 15 8 H 0.08 1.87 7.88 -52.49 -0.41 1.46 15 9 C 0.10 2.47 5.56 -106.79 -0.59 1.87 15 10 C -0.20 -4.66 9.74 -39.27 -0.38 -5.04 15 11 C -0.12 -2.42 9.90 -39.76 -0.39 -2.81 15 12 C 0.03 0.55 6.29 -83.72 -0.53 0.02 15 13 N -0.65 -11.06 5.51 -8.09 -0.04 -11.10 15 14 C 0.09 1.51 6.92 -83.34 -0.58 0.93 15 15 C -0.05 -0.81 12.19 -16.88 -0.21 -1.02 15 16 N -0.36 -5.99 12.06 30.52 0.37 -5.62 15 17 O 0.10 1.67 11.20 16.51 0.18 1.85 15 18 C -0.15 -2.48 10.28 29.93 0.31 -2.17 15 19 C -0.13 -2.92 7.90 -39.76 -0.31 -3.24 15 20 C -0.14 -3.34 8.60 -39.27 -0.34 -3.68 15 21 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 22 H 0.10 2.08 8.06 -52.49 -0.42 1.66 15 23 H 0.09 1.64 8.06 -52.48 -0.42 1.22 15 24 H 0.40 5.72 8.94 -40.82 -0.36 5.36 15 25 H 0.18 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.22 3.75 6.43 -52.49 -0.34 3.41 15 27 H 0.10 1.97 6.13 -52.48 -0.32 1.65 15 28 H 0.12 3.12 6.21 -52.49 -0.33 2.79 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -26.35 250.22 -5.77 -32.12 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -2.17 Total: 10.61 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.46 Total: -25.46 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.93 Total: -35.97 kcal Atomic # 8 Polarization: 1.67 SS G_CDS: 0.18 Total: 1.85 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.35 -5.77 -32.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203237919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.555 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds