Wall clock time and date at job start Sun Mar 29 2020 21:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30929 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47283 * 240.00193 * 3 2 1 5 5 H 1.48502 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46930 * 120.00167 * 3 2 1 7 7 C 1.39826 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99705 * 192.74688 * 7 2 1 9 9 C 1.41089 * 119.99758 * 12.75037 * 7 2 1 10 10 C 1.40914 * 120.14250 * 207.60392 * 9 7 2 11 11 C 1.36292 * 119.83911 * 179.72716 * 10 9 7 12 12 C 1.39648 * 120.15768 * 0.22411 * 11 10 9 13 13 N 1.38662 * 119.85330 * 180.02562 * 12 11 10 14 14 C 1.40414 * 120.00222 * 145.57307 * 13 12 11 15 15 C 1.41868 * 128.07343 * 171.27895 * 14 13 12 16 16 N 1.30147 * 106.37918 * 179.97438 * 15 14 13 17 17 O 1.20886 * 111.78343 * 0.02562 * 16 15 14 18 18 C 1.34294 * 111.65388 * 359.74428 * 17 16 15 19 19 C 1.39650 * 120.29784 * 0.03021 * 12 11 10 20 20 C 1.36289 * 120.15994 * 359.96834 * 19 12 11 21 21 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.08308 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.92172 * 180.25340 * 11 10 9 24 24 H 0.97010 * 119.99765 * 325.57361 * 13 12 11 25 25 H 1.07996 * 126.80842 * 359.97221 * 15 14 13 26 26 H 1.08001 * 126.84139 * 180.28078 * 18 17 16 27 27 H 1.08006 * 119.91818 * 179.97438 * 19 12 11 28 28 H 1.07997 * 120.07762 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0970 1.6965 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0084 -1.2109 -0.0005 8 1 3.0685 -1.2224 0.2058 9 6 1.3291 -2.4176 -0.2708 10 6 1.8041 -3.6320 0.2633 11 6 1.1398 -4.7932 0.0029 12 6 -0.0063 -4.7821 -0.7949 13 7 -0.6775 -5.9672 -1.0553 14 6 -2.0760 -5.9690 -1.1808 15 6 -2.9147 -7.0306 -1.6077 16 7 -4.1333 -6.5756 -1.5650 17 8 -4.1705 -5.4277 -1.1877 18 6 -2.9431 -4.9552 -0.9163 19 6 -0.4794 -3.5829 -1.3317 20 6 0.1750 -2.4143 -1.0794 21 1 -0.4851 0.8400 0.0004 22 1 2.6901 -3.6420 0.8808 23 1 1.5004 -5.7242 0.4150 24 1 -0.1808 -6.7950 -1.1509 25 1 -2.6036 -8.0201 -1.9086 26 1 -2.6939 -3.9664 -0.5606 27 1 -1.3662 -3.5814 -1.9483 28 1 -0.1923 -1.4876 -1.4948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203237919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:15 Heat of formation + Delta-G solvation = 72.003302 kcal Electronic energy + Delta-G solvation = -14925.388485 eV Core-core repulsion = 12329.846917 eV Total energy + Delta-G solvation = -2595.541568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.70308 -39.98373 -37.29203 -35.19207 -33.70020 -31.96050 -31.36581 -30.19952 -26.66676 -24.27739 -23.40068 -22.67875 -21.73786 -19.24911 -19.06670 -18.37172 -17.75350 -17.35416 -16.91522 -15.67506 -15.29383 -14.82646 -14.53782 -14.00663 -13.87193 -13.85384 -13.36683 -12.92089 -12.75224 -12.42355 -12.34260 -12.22643 -11.63434 -11.31961 -11.13196 -10.93558 -9.68076 -9.47397 -8.58427 -8.28537 -6.18913 0.55966 0.92017 1.12517 1.41273 1.45143 1.52374 1.67647 2.10497 2.24670 2.79595 2.87205 3.53643 3.74081 3.80693 4.26545 4.39833 4.46763 4.82538 4.88202 5.02488 5.13932 5.21730 5.37202 5.60752 5.71180 5.92085 6.11163 6.28744 6.51953 6.72808 6.90903 6.98815 7.10634 7.33398 8.40226 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.045286 B = 0.006232 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.141260 B = 4491.716880 C = 5014.656196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.064 3.936 10 C -0.211 4.211 11 C -0.117 4.117 12 C 0.048 3.952 13 N -0.640 5.640 14 C 0.077 3.923 15 C -0.029 4.029 16 N -0.375 5.375 17 O 0.088 5.912 18 C -0.150 4.150 19 C -0.138 4.138 20 C -0.156 4.156 21 H 0.286 0.714 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.418 0.582 25 H 0.224 0.776 26 H 0.210 0.790 27 H 0.107 0.893 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -7.082 -1.755 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.061 3.939 10 C -0.231 4.231 11 C -0.138 4.138 12 C -0.047 4.047 13 N -0.268 5.268 14 C -0.028 4.028 15 C -0.210 4.210 16 N -0.079 5.079 17 O 0.023 5.977 18 C -0.236 4.236 19 C -0.158 4.158 20 C -0.176 4.176 21 H 0.096 0.904 22 H 0.122 0.878 23 H 0.143 0.857 24 H 0.256 0.744 25 H 0.240 0.760 26 H 0.226 0.774 27 H 0.125 0.875 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.782 -7.339 -2.007 8.101 hybrid contribution 1.414 0.807 0.204 1.640 sum -1.368 -6.532 -1.803 6.913 Atomic orbital electron populations 1.69870 1.08662 1.30279 1.37144 1.26655 0.95576 1.04223 0.91591 0.85286 0.78706 0.76045 0.79881 1.18640 1.19513 1.18580 1.19712 0.96652 0.91994 1.44473 0.90712 1.17958 0.92541 0.93173 0.90228 1.20837 1.03381 0.93001 1.05898 1.20372 0.96855 0.97985 0.98602 1.17191 0.97379 0.85658 1.04519 1.40489 0.99980 1.08664 1.77651 1.18951 0.86731 0.94689 1.02413 1.25102 0.87414 1.02748 1.05752 1.73684 1.22809 0.94814 1.16639 1.84729 1.29573 1.20433 1.62939 1.25426 0.82422 1.02888 1.12897 1.20542 1.01263 0.92556 1.01489 1.20916 0.98890 0.96660 1.01139 0.90370 0.87799 0.85694 0.74400 0.75995 0.77355 0.87493 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.71 10.87 21.81 0.24 -42.47 15 2 C 0.03 1.64 5.22 85.21 0.44 2.08 15 3 Si 0.98 37.73 29.58 68.60 2.03 39.76 15 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 7 C -0.50 -26.10 9.04 23.35 0.21 -25.89 15 8 H 0.07 3.76 7.88 -2.91 -0.02 3.74 15 9 C 0.06 3.29 5.56 -21.27 -0.12 3.17 15 10 C -0.21 -9.66 9.74 22.47 0.22 -9.44 15 11 C -0.12 -4.65 9.90 22.16 0.22 -4.43 15 12 C 0.05 1.86 6.29 38.74 0.24 2.10 15 13 N -0.64 -19.78 5.51 -179.52 -0.99 -20.77 15 14 C 0.08 2.35 6.92 38.14 0.26 2.62 15 15 C -0.03 -0.76 12.19 85.84 1.05 0.28 15 16 N -0.37 -11.45 12.06 -58.57 -0.71 -12.15 15 17 O 0.09 2.82 11.20 69.25 0.78 3.60 15 18 C -0.15 -4.92 10.28 67.30 0.69 -4.23 15 19 C -0.14 -6.00 7.90 22.16 0.18 -5.82 15 20 C -0.16 -7.83 8.60 22.47 0.19 -7.64 15 21 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15 22 H 0.10 4.47 8.06 -2.91 -0.02 4.45 15 23 H 0.13 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.42 10.17 8.94 -92.70 -0.83 9.34 15 25 H 0.22 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.21 7.19 6.43 -2.91 -0.02 7.17 15 27 H 0.11 4.34 6.13 -2.91 -0.02 4.32 15 28 H 0.10 5.52 6.21 -2.91 -0.02 5.50 15 Total: -1.00 -56.98 250.22 5.31 -51.66 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.38 Total: 27.57 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 3.59 Total: -47.19 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.46 Total: -75.40 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.78 Total: 3.60 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -56.98 5.31 -51.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203237919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.668 kcal (2) G-P(sol) polarization free energy of solvation -56.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds