Wall clock time and date at job start Sun Mar 29 2020 21:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47224 * 65.00060 * 5 4 3 7 7 C 1.42895 * 114.00294 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.88630 * 327.57493 * 7 6 5 9 9 C 1.55157 * 111.00501 * 203.65009 * 7 6 5 10 10 C 1.54326 * 102.94101 * 206.42494 * 9 7 6 11 11 N 1.47025 * 107.27319 * 22.19346 * 10 9 7 12 12 C 1.36938 * 125.65154 * 181.09932 * 11 10 9 13 13 H 1.07999 * 120.00227 * 179.97438 * 12 11 10 14 14 C 1.38814 * 120.00079 * 359.95317 * 12 11 10 15 15 N 1.31624 * 119.99437 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00207 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47347 * 59.99866 * 16 14 12 18 18 H 1.48501 * 109.46775 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46744 * 299.99746 * 16 14 12 20 20 C 1.47429 * 108.70375 * 1.05665 * 11 10 9 21 21 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 27 27 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 28 28 H 1.09004 * 109.47113 * 184.99738 * 5 4 3 29 29 H 1.08993 * 109.47646 * 305.00069 * 5 4 3 30 30 H 1.08996 * 110.72023 * 324.78601 * 9 7 6 31 31 H 1.08992 * 110.71918 * 88.06415 * 9 7 6 32 32 H 1.09001 * 109.88442 * 262.77836 * 10 9 7 33 33 H 1.08996 * 109.88701 * 141.60615 * 10 9 7 34 34 H 0.97002 * 119.99282 * 180.02562 * 15 14 12 35 35 H 1.08994 * 110.37103 * 217.03336 * 20 11 10 36 36 H 1.09000 * 110.45712 * 94.75754 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 8 3.3973 3.5463 1.2204 7 6 3.7189 4.9349 1.3223 8 1 4.6522 5.1566 0.8047 9 6 3.7848 5.3831 2.8062 10 6 3.4506 6.8877 2.7280 11 7 2.7193 7.1077 1.4716 12 6 2.2606 8.3148 1.0160 13 1 1.7323 8.3718 0.0758 14 6 2.4741 9.4652 1.7629 15 7 3.1181 9.3958 2.9088 16 14 1.8478 11.1118 1.1418 17 1 0.3720 11.0535 0.9868 18 1 2.2022 12.1754 2.1156 19 1 2.4718 11.4154 -0.1711 20 6 2.5626 5.8136 0.7830 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.8332 0.9769 0.8908 27 1 3.8340 0.9766 -0.8891 28 1 4.9081 3.0256 -0.0892 29 1 3.3498 3.4411 -0.8424 30 1 3.0417 4.8535 3.4024 31 1 4.7852 5.2308 3.2110 32 1 4.3705 7.4723 2.7287 33 1 2.8267 7.1734 3.5748 34 1 3.2670 10.1996 3.4308 35 1 2.6561 5.9437 -0.2951 36 1 1.5996 5.3657 1.0282 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204985744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:27 Heat of formation + Delta-G solvation = -70.508788 kcal Electronic energy + Delta-G solvation = -16202.694331 eV Core-core repulsion = 13494.923060 eV Total energy + Delta-G solvation = -2707.771270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.57846 -37.71340 -35.74466 -32.33574 -31.60084 -29.45299 -28.68463 -26.84743 -24.28384 -22.86177 -22.44487 -20.23310 -19.97464 -16.99644 -16.91298 -16.67063 -15.76546 -14.89608 -14.58757 -14.51196 -14.01512 -13.61916 -13.06867 -12.81144 -12.61936 -12.15656 -12.01691 -11.66482 -11.54293 -11.35296 -10.95106 -10.90333 -10.78893 -10.61748 -10.13549 -10.07279 -9.73513 -9.65162 -9.61662 -8.98972 -8.54517 -6.77658 -5.66048 -2.99621 3.44519 3.48150 3.49799 3.63625 3.96870 4.56092 4.92315 4.97754 5.18386 5.22942 5.24450 5.35213 5.41959 5.49514 5.55962 5.60097 5.69575 5.79919 5.83049 5.85269 5.94955 6.03739 6.34800 6.55303 6.60909 6.76652 6.84176 7.18717 7.60462 7.67609 7.71435 7.87901 8.31096 9.27014 9.87220 10.53682 11.45754 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041572 B = 0.005034 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.372694 B = 5561.326835 C = 5884.797899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.377 6.377 4 C 0.067 3.933 5 C 0.063 3.937 6 O -0.372 6.372 7 C 0.071 3.929 8 H 0.064 0.936 9 C -0.137 4.137 10 C 0.179 3.821 11 N -0.605 5.605 12 C -0.227 4.227 13 H 0.077 0.923 14 C -0.009 4.009 15 N -0.924 5.924 16 Si 0.913 3.087 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.119 3.881 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.252 0.748 35 H 0.036 0.964 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -16.996 -5.060 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.014 4.014 6 O -0.291 6.291 7 C 0.013 3.987 8 H 0.082 0.918 9 C -0.175 4.175 10 C 0.054 3.946 11 N -0.333 5.333 12 C -0.356 4.356 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.571 5.571 16 Si 0.744 3.256 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.008 4.008 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.941 -16.712 -4.833 17.422 hybrid contribution 0.031 0.767 -0.519 0.926 sum 0.972 -15.945 -5.352 16.847 Atomic orbital electron populations 1.21734 0.93815 1.01892 1.03455 1.22435 0.95737 0.84232 0.99612 1.88031 1.20631 1.25711 1.95290 1.22519 0.82060 0.96123 1.00300 1.22467 0.97869 0.92101 0.88981 1.87938 1.81015 1.23409 1.36697 1.23411 0.97434 0.79698 0.98149 0.91756 1.22967 1.00899 0.99543 0.94114 1.21165 0.96581 0.87611 0.89234 1.44361 1.66154 1.01865 1.20882 1.19036 1.29797 0.83174 1.03560 0.90476 1.24806 1.00816 0.97857 0.97033 1.69956 1.45919 1.27386 1.13877 0.86174 0.78478 0.83362 0.77599 1.21159 1.21587 1.21205 1.21928 0.95917 0.87401 0.95563 0.91390 0.91592 0.91862 0.93827 0.93580 0.92662 0.92330 0.92188 0.92545 0.91491 0.91937 0.93403 0.93610 0.93722 0.94616 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.59 6.66 37.16 0.25 0.84 16 3 O -0.38 -5.38 10.31 -40.08 -0.41 -5.80 16 4 C 0.07 0.80 6.32 37.16 0.23 1.04 16 5 C 0.06 0.88 6.20 37.16 0.23 1.11 16 6 O -0.37 -6.75 10.12 -40.08 -0.41 -7.16 16 7 C 0.07 1.41 3.49 -24.58 -0.09 1.32 16 8 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 9 C -0.14 -2.81 6.69 -24.89 -0.17 -2.98 16 10 C 0.18 4.56 5.37 -3.06 -0.02 4.55 16 11 N -0.60 -16.39 3.39 -170.06 -0.58 -16.97 16 12 C -0.23 -6.60 10.28 -15.06 -0.15 -6.76 16 13 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -27.78 10.31 55.49 0.57 -27.20 16 16 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.12 2.71 6.97 -2.52 -0.02 2.70 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 33 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -32.37 297.49 -7.03 -39.40 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -6.22 Total: -4.70 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 0.56 Total: 0.40 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.01 Total: -44.18 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.82 Total: -12.95 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.37 -7.03 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204985744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.112 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds