Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47123 * 282.79562 * 3 2 1 5 5 O 1.42893 * 109.47389 * 42.79902 * 3 2 1 6 6 C 1.42898 * 114.00136 * 269.99813 * 5 3 2 7 7 C 1.53002 * 109.47438 * 179.97438 * 6 5 3 8 8 C 1.50695 * 109.47153 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00182 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99832 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99789 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47051 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46956 * 120.00137 * 12 10 8 15 15 H 1.48496 * 109.47015 * 240.00134 * 12 10 8 16 16 C 1.50703 * 109.46808 * 162.80313 * 3 2 1 17 17 C 1.38235 * 120.00292 * 99.99784 * 16 3 2 18 18 C 1.38230 * 119.99899 * 179.97438 * 17 16 3 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99503 * 279.97076 * 16 3 2 22 22 H 4.18741 * 15.03787 * 359.97438 * 4 2 1 23 23 H 1.08992 * 109.47316 * 300.00251 * 6 5 3 24 24 H 1.09006 * 109.47268 * 60.00204 * 6 5 3 25 25 H 1.08998 * 109.46850 * 300.00424 * 7 6 5 26 26 H 1.09001 * 109.46957 * 60.00068 * 7 6 5 27 27 H 0.97003 * 119.99531 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.99730 * 359.97438 * 17 16 3 29 29 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 31 31 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.00455 * 0.02562 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2268 1.0021 5 8 3.1229 -0.9876 -0.9153 6 6 3.3173 -2.2765 -0.3298 7 6 3.8256 -3.2495 -1.3956 8 6 4.0299 -4.6089 -0.7782 9 1 3.8181 -4.7636 0.2695 10 6 4.4875 -5.6553 -1.5508 11 7 4.7459 -5.4668 -2.8264 12 14 4.7415 -7.3402 -0.7853 13 1 4.3817 -7.2891 0.6545 14 1 3.8790 -8.3326 -1.4757 15 1 6.1651 -7.7385 -0.9265 16 6 3.1477 1.3582 -0.4201 17 6 3.5736 2.2634 0.5339 18 6 4.0342 3.5084 0.1485 19 6 4.0698 3.8480 -1.1910 20 6 3.6452 2.9423 -2.1451 21 6 3.1824 1.6981 -1.7596 22 1 -1.0500 0.0004 0.0003 23 1 4.0490 -2.2036 0.4747 24 1 2.3711 -2.6398 0.0716 25 1 3.0934 -3.3224 -2.1997 26 1 4.7716 -2.8866 -1.7973 27 1 5.0682 -6.2028 -3.3699 28 1 3.5465 1.9978 1.5804 29 1 4.3666 4.2158 0.8938 30 1 4.4255 4.8223 -1.4919 31 1 3.6726 3.2077 -3.1917 32 1 2.8497 0.9909 -2.5049 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = 24.521437 kcal Electronic energy + Delta-G solvation = -14666.891405 eV Core-core repulsion = 12172.831212 eV Total energy + Delta-G solvation = -2494.060193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.44009 -37.43492 -33.74194 -32.80818 -31.26373 -30.84690 -29.71587 -26.26883 -24.44314 -22.51294 -21.62211 -20.83541 -18.42850 -16.99240 -16.52016 -15.71414 -15.36861 -15.25509 -14.51976 -14.37802 -13.90346 -13.35990 -13.23790 -12.56436 -12.25826 -12.20390 -11.41734 -11.09957 -11.01993 -10.93315 -10.67219 -10.50319 -10.33278 -9.97209 -9.50574 -9.20446 -9.12643 -8.86405 -8.74352 -8.37409 -6.04041 -4.07698 1.33548 1.46931 2.87403 2.97234 3.29820 3.36873 3.40910 3.81386 4.21120 4.44927 4.66011 4.91219 5.00448 5.10967 5.19664 5.32270 5.42951 5.58457 5.67944 5.95115 6.04939 6.10460 6.22314 6.25798 6.47258 6.56423 6.66200 6.84378 7.02812 7.48170 7.74515 7.77082 7.77945 8.05601 8.33961 8.98799 9.56095 11.07666 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036013 B = 0.004960 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.300755 B = 5644.158160 C = 5959.186393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C 0.234 3.766 4 H 0.086 0.914 5 O -0.368 6.368 6 C 0.065 3.935 7 C 0.026 3.974 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.077 4.077 17 C -0.109 4.109 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.083 4.083 22 H 0.217 0.783 23 H 0.040 0.960 24 H 0.038 0.962 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 16.448 5.387 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.176 3.824 4 H 0.104 0.896 5 O -0.287 6.287 6 C -0.010 4.010 7 C -0.011 4.011 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.077 4.077 17 C -0.127 4.127 18 C -0.144 4.144 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.101 4.101 22 H 0.234 0.766 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.815 16.379 5.033 17.555 hybrid contribution -0.120 -1.079 0.578 1.230 sum -3.935 15.300 5.611 16.765 Atomic orbital electron populations 1.24883 0.95794 0.99897 1.00504 1.23700 0.94853 1.00601 1.00371 1.17499 0.82907 0.87512 0.94501 0.89599 1.88077 1.84906 1.20117 1.35589 1.23049 0.98403 0.81132 0.98420 1.19075 0.97127 0.91420 0.93471 1.21079 1.44895 0.94122 0.96093 0.92460 1.24993 0.95323 0.99115 0.94821 1.69993 1.45055 1.32080 1.05801 0.86469 0.77841 0.83906 0.79391 1.19681 1.20902 1.20879 1.19586 0.99765 0.94094 0.94249 1.20963 0.98866 0.93795 0.99037 1.21034 1.00723 0.96485 0.96154 1.21152 1.00015 0.99432 0.93260 1.21186 0.99554 0.93948 0.99577 1.21108 0.97127 0.96018 0.95808 0.76604 0.94188 0.94373 0.95688 0.95593 0.92883 0.85985 0.86063 0.86249 0.85962 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 19.25 29.55 0.57 -2.20 16 2 C -0.19 -3.22 12.85 -37.12 -0.48 -3.70 16 3 C 0.23 3.94 2.77 -30.67 -0.08 3.85 16 4 H 0.09 1.30 7.65 -51.93 -0.40 0.91 16 5 O -0.37 -7.62 9.28 -35.23 -0.33 -7.95 16 6 C 0.07 1.46 5.67 37.16 0.21 1.67 16 7 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 8 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 9 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 12 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C -0.08 -1.17 4.93 -104.62 -0.52 -1.68 16 17 C -0.11 -1.38 9.67 -39.59 -0.38 -1.76 16 18 C -0.13 -1.41 10.05 -39.59 -0.40 -1.80 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 21 C -0.08 -1.24 9.34 -39.58 -0.37 -1.61 16 22 H 0.22 2.17 7.80 -54.09 -0.42 1.75 16 23 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.12 1.30 8.04 -52.49 -0.42 0.87 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 2.07 7.78 -52.49 -0.41 1.66 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -31.92 291.96 -7.16 -39.09 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.15 Total: -1.78 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.80 Total: -24.09 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.33 Total: -7.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.92 -7.16 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.607 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds