Wall clock time and date at job start Sun Mar 29 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47123 * 282.79562 * 3 2 1 5 5 O 1.42893 * 109.47389 * 42.79902 * 3 2 1 6 6 C 1.42898 * 114.00136 * 269.99813 * 5 3 2 7 7 C 1.53002 * 109.47438 * 179.97438 * 6 5 3 8 8 C 1.50695 * 109.47153 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00182 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99832 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99789 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47051 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46956 * 120.00137 * 12 10 8 15 15 H 1.48496 * 109.47015 * 240.00134 * 12 10 8 16 16 C 1.50703 * 109.46808 * 162.80313 * 3 2 1 17 17 C 1.38235 * 120.00292 * 99.99784 * 16 3 2 18 18 C 1.38230 * 119.99899 * 179.97438 * 17 16 3 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99503 * 279.97076 * 16 3 2 22 22 H 4.18741 * 15.03787 * 359.97438 * 4 2 1 23 23 H 1.08992 * 109.47316 * 300.00251 * 6 5 3 24 24 H 1.09006 * 109.47268 * 60.00204 * 6 5 3 25 25 H 1.08998 * 109.46850 * 300.00424 * 7 6 5 26 26 H 1.09001 * 109.46957 * 60.00068 * 7 6 5 27 27 H 0.97003 * 119.99531 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.99730 * 359.97438 * 17 16 3 29 29 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 31 31 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.00455 * 0.02562 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2268 1.0021 5 8 3.1229 -0.9876 -0.9153 6 6 3.3173 -2.2765 -0.3298 7 6 3.8256 -3.2495 -1.3956 8 6 4.0299 -4.6089 -0.7782 9 1 3.8181 -4.7636 0.2695 10 6 4.4875 -5.6553 -1.5508 11 7 4.7459 -5.4668 -2.8264 12 14 4.7415 -7.3402 -0.7853 13 1 4.3817 -7.2891 0.6545 14 1 3.8790 -8.3326 -1.4757 15 1 6.1651 -7.7385 -0.9265 16 6 3.1477 1.3582 -0.4201 17 6 3.5736 2.2634 0.5339 18 6 4.0342 3.5084 0.1485 19 6 4.0698 3.8480 -1.1910 20 6 3.6452 2.9423 -2.1451 21 6 3.1824 1.6981 -1.7596 22 1 -1.0500 0.0004 0.0003 23 1 4.0490 -2.2036 0.4747 24 1 2.3711 -2.6398 0.0716 25 1 3.0934 -3.3224 -2.1997 26 1 4.7716 -2.8866 -1.7973 27 1 5.0682 -6.2028 -3.3699 28 1 3.5465 1.9978 1.5804 29 1 4.3666 4.2158 0.8938 30 1 4.4255 4.8223 -1.4919 31 1 3.6726 3.2077 -3.1917 32 1 2.8497 0.9909 -2.5049 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:03 Heat of formation + Delta-G solvation = 6.465849 kcal Electronic energy + Delta-G solvation = -14667.674354 eV Core-core repulsion = 12172.831212 eV Total energy + Delta-G solvation = -2494.843142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54348 -38.84622 -35.59153 -34.40443 -32.47516 -31.86199 -31.54331 -27.62028 -26.37869 -23.58295 -22.90493 -22.51569 -19.67169 -18.69572 -17.86197 -17.32810 -16.68286 -16.64414 -16.26768 -15.58473 -15.23702 -14.71916 -14.32625 -14.24327 -13.82237 -13.51174 -13.06691 -12.84948 -12.55785 -12.49520 -12.24676 -11.95457 -11.81071 -11.40859 -11.32342 -11.16367 -10.84988 -10.56265 -9.83404 -9.74944 -8.25410 -6.38994 0.34255 0.49222 1.40393 1.41800 1.55150 1.64069 1.79366 2.37613 2.79872 2.96824 3.08613 3.47190 3.85799 3.99104 4.16238 4.20775 4.29759 4.37863 4.44975 4.63378 4.70067 4.86818 4.95315 5.04548 5.14512 5.32040 5.52648 5.53815 5.59802 5.60067 5.72281 6.07187 6.08918 6.29722 6.58276 6.76486 7.30999 8.88035 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036013 B = 0.004960 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.300755 B = 5644.158160 C = 5959.186393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.230 3.770 4 H 0.098 0.902 5 O -0.390 6.390 6 C 0.083 3.917 7 C 0.030 3.970 8 C -0.546 4.546 9 H 0.068 0.932 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.976 3.024 13 H -0.258 1.258 14 H -0.277 1.277 15 H -0.275 1.275 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.112 4.112 22 H 0.256 0.744 23 H 0.054 0.946 24 H 0.042 0.958 25 H -0.008 1.008 26 H -0.004 1.004 27 H 0.266 0.734 28 H 0.141 0.859 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 17.394 7.234 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.249 4.249 3 C 0.172 3.828 4 H 0.116 0.884 5 O -0.309 6.309 6 C 0.007 3.993 7 C -0.007 4.007 8 C -0.584 4.584 9 H 0.086 0.914 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.800 3.200 13 H -0.182 1.182 14 H -0.202 1.202 15 H -0.201 1.201 16 C -0.099 4.099 17 C -0.133 4.133 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.131 4.131 22 H 0.272 0.728 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.010 0.990 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.010 17.348 6.891 19.092 hybrid contribution -0.110 -1.238 -0.036 1.244 sum -4.120 16.109 6.855 17.985 Atomic orbital electron populations 1.25843 0.96689 0.97591 0.98130 1.23961 0.95547 1.02800 1.02602 1.17698 0.83638 0.87232 0.94210 0.88410 1.88022 1.85547 1.20040 1.37333 1.22613 0.98607 0.81377 0.96657 1.18918 0.94859 0.92948 0.93964 1.21483 1.45203 0.94911 0.96776 0.91358 1.26057 0.94576 1.03893 0.95218 1.70138 1.45729 1.33763 1.07548 0.85237 0.77999 0.77833 0.78979 1.18174 1.20214 1.20091 1.19630 1.01473 0.93934 0.94904 1.21240 0.98450 0.94072 0.99510 1.21482 0.99118 0.96204 0.97067 1.21579 0.98554 1.00315 0.92986 1.21433 0.99097 0.93169 1.01114 1.21080 0.99306 0.97094 0.95585 0.72763 0.92788 0.93981 0.98976 0.98549 0.92495 0.84102 0.82611 0.82872 0.84269 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 19.25 74.32 1.43 -3.11 16 2 C -0.25 -8.26 12.85 31.13 0.40 -7.86 16 3 C 0.23 7.92 2.77 28.05 0.08 8.00 16 4 H 0.10 3.00 7.65 -2.39 -0.02 2.98 16 5 O -0.39 -16.97 9.28 -148.98 -1.38 -18.35 16 6 C 0.08 3.82 5.67 71.98 0.41 4.23 16 7 C 0.03 1.73 5.34 29.85 0.16 1.89 16 8 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 9 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 10 C 0.00 0.05 5.46 84.66 0.46 0.51 16 11 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 12 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 C -0.10 -3.06 4.93 -19.87 -0.10 -3.16 16 17 C -0.11 -2.76 9.67 22.27 0.22 -2.54 16 18 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 19 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 20 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 21 C -0.11 -3.53 9.34 22.27 0.21 -3.32 16 22 H 0.26 4.38 7.80 -4.42 -0.03 4.34 16 23 H 0.05 2.30 8.08 -2.39 -0.02 2.28 16 24 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.14 2.72 8.04 -2.91 -0.02 2.70 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.10 3.67 7.78 -2.91 -0.02 3.64 16 Total: -1.00 -71.42 291.96 6.18 -65.24 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.08 Total: 8.60 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 4.17 Total: -44.15 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.28 Total: -57.77 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.38 Total: -18.35 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.42 6.18 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.709 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds