Wall clock time and date at job start Sun Mar 29 2020 21:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47010 * 110.99747 * 2 1 4 4 C 1.53099 * 109.25599 * 177.60113 * 3 2 1 5 5 O 1.43024 * 109.25579 * 56.85008 * 4 3 2 6 6 C 1.43011 * 113.73779 * 301.32736 * 5 4 3 7 7 H 1.08992 * 109.50698 * 298.69408 * 6 5 4 8 8 C 1.53001 * 109.50654 * 178.60445 * 6 5 4 9 9 O 1.42896 * 109.47070 * 64.99716 * 8 6 5 10 10 C 1.42900 * 114.00010 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47304 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.47014 * 111.00249 * 236.36444 * 2 1 3 21 21 H 1.09006 * 109.46783 * 56.04983 * 1 2 3 22 22 H 1.09004 * 109.46770 * 176.04077 * 1 2 3 23 23 H 1.08995 * 109.47294 * 296.04780 * 1 2 3 24 24 H 1.09001 * 109.50719 * 57.67452 * 3 2 1 25 25 H 1.08994 * 109.50651 * 297.53802 * 3 2 1 26 26 H 1.08997 * 109.51081 * 296.91596 * 4 3 2 27 27 H 1.09006 * 109.50578 * 176.77977 * 4 3 2 28 28 H 1.09006 * 109.47074 * 305.00376 * 8 6 5 29 29 H 1.08995 * 109.47115 * 185.00244 * 8 6 5 30 30 H 1.09002 * 109.47002 * 60.00466 * 10 9 8 31 31 H 1.09001 * 109.47588 * 300.00292 * 10 9 8 32 32 H 1.09002 * 109.46935 * 60.00150 * 11 10 9 33 33 H 1.08998 * 109.47061 * 300.00943 * 11 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.50529 * 62.45577 * 20 2 1 36 36 H 1.09006 * 109.50726 * 302.33024 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0605 5 8 4.0175 0.5573 -1.0402 6 6 3.5250 -0.7850 -1.0708 7 1 3.8392 -1.3086 -0.1679 8 6 4.0827 -1.5059 -2.2997 9 8 5.5013 -1.6267 -2.1781 10 6 6.1247 -2.2898 -3.2798 11 6 7.6346 -2.3626 -3.0432 12 6 8.2920 -3.0613 -4.2053 13 1 7.6931 -3.4174 -5.0304 14 6 9.6584 -3.2458 -4.2152 15 7 10.3878 -2.8127 -3.2103 16 14 10.4735 -4.1112 -5.6560 17 1 10.2047 -3.3539 -6.9048 18 1 9.9250 -5.4854 -5.7828 19 1 11.9389 -4.1820 -5.4263 20 6 1.9960 -0.7602 -1.1427 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0253 -0.0710 23 1 -0.3633 0.4512 0.9232 24 1 1.6133 1.9092 0.8682 25 1 1.6828 1.8825 -0.9110 26 1 3.8384 0.8644 0.9966 27 1 3.9221 2.3399 0.0030 28 1 3.8423 -0.9344 -3.1963 29 1 3.6382 -2.4985 -2.3714 30 1 5.9267 -1.7351 -4.1970 31 1 5.7226 -3.2988 -3.3714 32 1 7.8323 -2.9176 -2.1261 33 1 8.0370 -1.3538 -2.9512 34 1 9.9646 -2.3629 -2.4622 35 1 1.6828 -0.2843 -2.0720 36 1 1.6134 -1.7804 -1.1087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:46 Heat of formation + Delta-G solvation = -98.708487 kcal Electronic energy + Delta-G solvation = -16039.903356 eV Core-core repulsion = 13330.909255 eV Total energy + Delta-G solvation = -2708.994101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78782 -37.28748 -35.74845 -33.60048 -32.15913 -29.64151 -29.00881 -26.32147 -24.32776 -23.90906 -22.21785 -21.23265 -20.46689 -16.91142 -16.67209 -16.40230 -15.97170 -15.25589 -15.20453 -14.94237 -14.68670 -13.93371 -13.71757 -13.40169 -12.72647 -12.61540 -12.51353 -12.22010 -11.86657 -11.58065 -11.36041 -10.97453 -10.90116 -10.52124 -10.32249 -10.09500 -9.75927 -9.62738 -8.95543 -8.70728 -8.61571 -8.29718 -6.35385 -4.04744 3.44396 3.46545 3.48049 3.66794 3.71310 4.15465 4.57499 4.70696 4.74984 4.91928 5.01106 5.02449 5.18941 5.26587 5.28291 5.42616 5.43258 5.47043 5.51149 5.55114 5.66505 5.78360 5.96760 6.18439 6.22626 6.60478 6.62262 6.77101 7.18393 7.32412 7.55924 7.88386 8.22923 8.46406 8.88381 9.68285 11.06170 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.070608 B = 0.004095 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.463197 B = 6835.758399 C = 7097.206413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.368 6.368 6 C 0.097 3.903 7 H 0.075 0.925 8 C 0.071 3.929 9 O -0.385 6.385 10 C 0.076 3.924 11 C 0.012 3.988 12 C -0.605 4.605 13 H 0.050 0.950 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 1.073 2.927 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.282 1.282 20 C 0.026 3.974 21 H 0.027 0.973 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.015 0.985 33 H 0.016 0.984 34 H 0.271 0.729 35 H 0.045 0.955 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 6.268 5.706 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.286 6.286 6 C 0.038 3.962 7 H 0.093 0.907 8 C -0.007 4.007 9 O -0.304 6.304 10 C 0.000 4.000 11 C -0.025 4.025 12 C -0.644 4.644 13 H 0.068 0.932 14 C -0.188 4.188 15 N -0.546 5.546 16 Si 0.900 3.100 17 H -0.214 1.214 18 H -0.214 1.214 19 H -0.207 1.207 20 C -0.103 4.103 21 H 0.045 0.955 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.995 5.677 5.563 19.673 hybrid contribution -2.316 0.750 -0.173 2.441 sum -20.312 6.427 5.390 21.976 Atomic orbital electron populations 1.22387 0.86795 1.02158 1.00962 1.62168 1.08213 1.13838 1.42510 1.22855 0.97149 0.89581 1.01603 1.22654 0.91514 0.96748 0.90685 1.88132 1.69746 1.23077 1.47655 1.22133 0.90707 0.83994 0.99331 0.90676 1.22282 0.84390 0.97922 0.96134 1.87963 1.17225 1.79761 1.45453 1.22720 0.96261 0.93892 0.87129 1.19194 0.88162 0.97332 0.97791 1.21891 0.94909 1.41695 1.05880 0.93215 1.25879 0.94310 0.96649 1.01958 1.70752 1.39007 1.36181 1.08618 0.83501 0.76189 0.75859 0.74408 1.21410 1.21409 1.20680 1.22730 0.95793 0.99549 0.92203 0.95484 0.91137 0.91105 0.89655 0.93914 0.92212 0.88345 0.93204 0.92335 0.94478 0.94544 0.96640 0.96536 0.91841 0.93680 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.63 60.07 0.58 0.78 16 2 N -0.54 -5.78 4.99 -242.59 -1.21 -6.99 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.72 7.01 37.21 0.26 0.98 16 5 O -0.37 -5.90 10.43 -39.96 -0.42 -6.32 16 6 C 0.10 1.41 3.09 -26.68 -0.08 1.33 16 7 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 8 C 0.07 1.15 5.60 37.16 0.21 1.35 16 9 O -0.38 -8.31 10.31 -39.96 -0.41 -8.72 16 10 C 0.08 1.75 5.88 37.16 0.22 1.97 16 11 C 0.01 0.34 4.65 -27.88 -0.13 0.21 16 12 C -0.61 -17.94 9.11 -34.44 -0.31 -18.25 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 15 N -0.91 -28.79 13.65 55.43 0.76 -28.03 16 16 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.03 0.29 4.94 -3.71 -0.02 0.27 16 21 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 22 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 33 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 34 H 0.27 8.62 7.22 -40.82 -0.29 8.33 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -33.59 296.50 -7.54 -41.13 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -6.24 Total: -5.33 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 0.60 Total: -10.83 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.45 Total: -35.01 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.83 Total: -15.04 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.59 -7.54 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.581 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds