Wall clock time and date at job start Sun Mar 29 2020 21:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47010 * 110.99747 * 2 1 4 4 C 1.53099 * 109.25599 * 177.60113 * 3 2 1 5 5 O 1.43024 * 109.25579 * 56.85008 * 4 3 2 6 6 C 1.43011 * 113.73779 * 301.32736 * 5 4 3 7 7 H 1.08992 * 109.50698 * 298.69408 * 6 5 4 8 8 C 1.53001 * 109.50654 * 178.60445 * 6 5 4 9 9 O 1.42896 * 109.47070 * 64.99716 * 8 6 5 10 10 C 1.42900 * 114.00010 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47304 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.47014 * 111.00249 * 236.36444 * 2 1 3 21 21 H 1.09006 * 109.46783 * 56.04983 * 1 2 3 22 22 H 1.09004 * 109.46770 * 176.04077 * 1 2 3 23 23 H 1.08995 * 109.47294 * 296.04780 * 1 2 3 24 24 H 1.09001 * 109.50719 * 57.67452 * 3 2 1 25 25 H 1.08994 * 109.50651 * 297.53802 * 3 2 1 26 26 H 1.08997 * 109.51081 * 296.91596 * 4 3 2 27 27 H 1.09006 * 109.50578 * 176.77977 * 4 3 2 28 28 H 1.09006 * 109.47074 * 305.00376 * 8 6 5 29 29 H 1.08995 * 109.47115 * 185.00244 * 8 6 5 30 30 H 1.09002 * 109.47002 * 60.00466 * 10 9 8 31 31 H 1.09001 * 109.47588 * 300.00292 * 10 9 8 32 32 H 1.09002 * 109.46935 * 60.00150 * 11 10 9 33 33 H 1.08998 * 109.47061 * 300.00943 * 11 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.50529 * 62.45577 * 20 2 1 36 36 H 1.09006 * 109.50726 * 302.33024 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0605 5 8 4.0175 0.5573 -1.0402 6 6 3.5250 -0.7850 -1.0708 7 1 3.8392 -1.3086 -0.1679 8 6 4.0827 -1.5059 -2.2997 9 8 5.5013 -1.6267 -2.1781 10 6 6.1247 -2.2898 -3.2798 11 6 7.6346 -2.3626 -3.0432 12 6 8.2920 -3.0613 -4.2053 13 1 7.6931 -3.4174 -5.0304 14 6 9.6584 -3.2458 -4.2152 15 7 10.3878 -2.8127 -3.2103 16 14 10.4735 -4.1112 -5.6560 17 1 10.2047 -3.3539 -6.9048 18 1 9.9250 -5.4854 -5.7828 19 1 11.9389 -4.1820 -5.4263 20 6 1.9960 -0.7602 -1.1427 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0253 -0.0710 23 1 -0.3633 0.4512 0.9232 24 1 1.6133 1.9092 0.8682 25 1 1.6828 1.8825 -0.9110 26 1 3.8384 0.8644 0.9966 27 1 3.9221 2.3399 0.0030 28 1 3.8423 -0.9344 -3.1963 29 1 3.6382 -2.4985 -2.3714 30 1 5.9267 -1.7351 -4.1970 31 1 5.7226 -3.2988 -3.3714 32 1 7.8323 -2.9176 -2.1261 33 1 8.0370 -1.3538 -2.9512 34 1 9.9646 -2.3629 -2.4622 35 1 1.6828 -0.2843 -2.0720 36 1 1.6134 -1.7804 -1.1087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:46 Heat of formation + Delta-G solvation = -123.611873 kcal Electronic energy + Delta-G solvation = -16040.983247 eV Core-core repulsion = 13330.909255 eV Total energy + Delta-G solvation = -2710.073993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79000 -38.87398 -36.70863 -35.76919 -33.39230 -31.53569 -29.95597 -27.50073 -26.03038 -25.11358 -23.41093 -23.16583 -21.45665 -19.02920 -17.88516 -17.56604 -17.28358 -16.62259 -16.21041 -16.11728 -15.81433 -15.62558 -15.03292 -14.80439 -14.34355 -14.22178 -13.52332 -13.30068 -13.11241 -12.92800 -12.75725 -12.43023 -12.23915 -12.08238 -11.93597 -11.72459 -11.57437 -10.85967 -10.70862 -10.66697 -10.51383 -9.48883 -8.75318 -6.46773 1.53905 1.63670 1.83074 2.44030 2.60436 2.67882 2.99330 3.12213 3.82324 3.89326 3.91049 3.98076 4.14859 4.21651 4.26307 4.34075 4.41204 4.42898 4.55598 4.56647 4.61856 4.73898 4.75114 4.80388 4.92839 4.97166 5.09991 5.30702 5.80795 5.84510 5.91047 6.10377 6.13977 6.32009 6.47031 7.38007 8.66011 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.070608 B = 0.004095 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.463197 B = 6835.758399 C = 7097.206413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.021 3.979 4 C 0.053 3.947 5 O -0.403 6.403 6 C 0.096 3.904 7 H 0.061 0.939 8 C 0.063 3.937 9 O -0.411 6.411 10 C 0.091 3.909 11 C 0.011 3.989 12 C -0.622 4.622 13 H 0.061 0.939 14 C -0.039 4.039 15 N -0.934 5.934 16 Si 1.126 2.874 17 H -0.266 1.266 18 H -0.264 1.264 19 H -0.283 1.283 20 C 0.035 3.965 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.052 0.948 32 H -0.008 1.008 33 H -0.012 1.012 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.693 5.814 4.793 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.106 4.106 4 C -0.023 4.023 5 O -0.322 6.322 6 C 0.038 3.962 7 H 0.079 0.921 8 C -0.013 4.013 9 O -0.331 6.331 10 C 0.015 3.985 11 C -0.026 4.026 12 C -0.660 4.660 13 H 0.080 0.920 14 C -0.237 4.237 15 N -0.571 5.571 16 Si 0.946 3.054 17 H -0.191 1.191 18 H -0.189 1.189 19 H -0.208 1.208 20 C -0.094 4.094 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.127 0.873 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.130 0.870 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.010 0.990 33 H 0.006 0.994 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.888 5.238 4.670 21.089 hybrid contribution -1.805 0.962 0.207 2.056 sum -21.693 6.200 4.877 23.083 Atomic orbital electron populations 1.22456 0.84892 1.03026 1.01838 1.62186 1.09918 1.14006 1.42068 1.22827 0.95510 0.89686 1.02625 1.22885 0.93241 0.96844 0.89334 1.88072 1.71001 1.23854 1.49310 1.22137 0.92920 0.83330 0.97786 0.92051 1.22623 0.81437 0.99863 0.97426 1.87910 1.20591 1.79726 1.44886 1.22338 0.93247 0.95121 0.87772 1.19120 0.91921 0.95067 0.96517 1.22310 0.95616 1.41550 1.06502 0.92047 1.27680 0.95621 0.96510 1.03852 1.70900 1.39277 1.37714 1.09218 0.82848 0.75059 0.76045 0.71495 1.19077 1.18873 1.20832 1.22616 0.93147 1.00858 0.92743 0.95038 0.90272 0.89823 0.87340 0.93961 0.92657 0.86950 0.92607 0.89659 0.93770 0.92977 0.99011 0.99413 0.93671 0.93490 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.63 127.69 1.23 1.56 16 2 N -0.56 -10.67 4.99 -921.42 -4.59 -15.26 16 3 C 0.02 0.39 5.66 86.32 0.49 0.88 16 4 C 0.05 1.23 7.01 72.02 0.50 1.74 16 5 O -0.40 -12.95 10.43 -144.46 -1.51 -14.46 16 6 C 0.10 2.76 3.09 30.63 0.09 2.85 16 7 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 8 C 0.06 2.00 5.60 71.98 0.40 2.40 16 9 O -0.41 -17.91 10.31 -144.46 -1.49 -19.39 16 10 C 0.09 4.20 5.88 71.98 0.42 4.63 16 11 C 0.01 0.63 4.65 29.85 0.14 0.77 16 12 C -0.62 -36.98 9.11 25.60 0.23 -36.75 16 13 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 14 C -0.04 -2.36 5.46 84.66 0.46 -1.90 16 15 N -0.93 -60.39 13.65 21.45 0.29 -60.10 16 16 Si 1.13 50.68 29.90 68.60 2.05 52.73 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 C 0.03 0.72 4.94 86.31 0.43 1.15 16 21 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 22 H 0.08 0.90 8.08 -2.38 -0.02 0.88 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 33 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 34 H 0.25 16.87 7.22 -92.70 -0.67 16.20 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 1.81 8.11 -2.38 -0.02 1.79 16 Total: -1.00 -73.22 296.50 0.28 -72.94 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.12 Total: 6.22 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.40 Total: -22.67 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -4.30 Total: -75.36 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -3.00 Total: -33.85 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -73.22 0.28 -72.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.672 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds