Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48497 * 109.47266 * 269.99883 * 3 2 1 5 5 H 1.48493 * 109.47073 * 30.00333 * 3 2 1 6 6 H 1.48500 * 109.46889 * 150.00227 * 3 2 1 7 7 C 1.37874 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99847 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47139 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46809 * 180.02562 * 11 10 9 13 13 C 1.42902 * 113.99720 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47012 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.59597 * 307.76117 * 14 13 12 16 16 C 1.54086 * 110.54257 * 185.00016 * 14 13 12 17 17 O 1.45740 * 103.89563 * 241.39651 * 16 14 13 18 18 C 1.33719 * 109.18159 * 359.97438 * 17 16 14 19 19 O 1.21436 * 123.07570 * 179.97438 * 18 17 16 20 20 O 1.33718 * 113.84482 * 0.02562 * 18 17 16 21 21 H 0.96998 * 120.00087 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47202 * 60.00577 * 9 7 2 23 23 H 1.08999 * 109.47072 * 300.00042 * 9 7 2 24 24 H 1.09007 * 109.47171 * 59.99940 * 10 9 7 25 25 H 1.08994 * 109.47278 * 300.00239 * 10 9 7 26 26 H 1.08997 * 109.47127 * 60.00537 * 11 10 9 27 27 H 1.08999 * 109.47314 * 299.99900 * 11 10 9 28 28 H 1.08994 * 109.46959 * 59.99662 * 13 12 11 29 29 H 1.09001 * 109.46771 * 299.99851 * 13 12 11 30 30 H 1.09003 * 110.54053 * 0.02562 * 16 14 13 31 31 H 1.08996 * 110.53939 * 122.78808 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4089 -6.0733 0.0007 13 6 1.7943 -7.3634 0.0008 14 6 2.8773 -8.4442 0.0021 15 1 3.5907 -8.2731 -0.8041 16 6 2.2447 -9.8436 -0.1236 17 8 2.6398 -10.5180 1.1065 18 6 3.3781 -9.6845 1.8469 19 8 3.8402 -9.9904 2.9274 20 8 3.5600 -8.4829 1.2891 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8904 26 1 0.8533 -5.0452 -0.8897 27 1 0.8539 -5.0446 0.8903 28 1 1.1745 -7.4706 -0.8894 29 1 1.1739 -7.4702 0.8906 30 1 1.1592 -9.7683 -0.1874 31 1 2.6441 -10.3671 -0.9922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = -213.608091 kcal Electronic energy + Delta-G solvation = -15493.309803 eV Core-core repulsion = 12545.781525 eV Total energy + Delta-G solvation = -2947.528278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.21530 -39.36331 -38.70015 -37.81691 -35.90734 -33.78015 -32.45163 -28.80415 -27.02969 -24.77529 -24.29492 -23.77592 -22.02302 -19.20781 -18.76046 -18.58570 -18.31806 -17.46715 -17.24939 -16.54925 -16.44200 -15.79702 -15.30346 -15.06718 -14.62906 -14.44457 -14.02375 -13.40225 -13.35101 -13.21113 -12.71907 -12.52050 -12.49509 -12.30010 -12.03279 -11.71389 -11.63632 -11.44404 -11.19698 -10.62618 -10.55909 -8.21898 -6.32486 1.06931 1.40896 1.41999 1.49144 1.53358 2.06428 2.31332 2.43434 3.11897 3.13398 3.46249 3.56859 3.99855 4.16758 4.22703 4.28656 4.39819 4.45456 4.60506 4.61754 4.92538 4.93410 5.16737 5.49310 5.70248 5.82676 6.02033 6.13381 6.17117 6.27398 6.83348 7.36868 8.90007 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062943 B = 0.003746 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.737752 B = 7471.876141 C = 7685.490407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.100 4.100 11 C 0.075 3.925 12 O -0.404 6.404 13 C 0.041 3.959 14 C 0.045 3.955 15 H 0.157 0.843 16 C 0.031 3.969 17 O -0.330 6.330 18 C 0.597 3.403 19 O -0.507 6.507 20 O -0.332 6.332 21 H 0.265 0.735 22 H 0.003 0.997 23 H -0.005 1.005 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -19.609 -5.459 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.138 4.138 11 C -0.001 4.001 12 O -0.324 6.324 13 C -0.035 4.035 14 C -0.010 4.010 15 H 0.175 0.825 16 C -0.042 4.042 17 O -0.249 6.249 18 C 0.406 3.594 19 O -0.403 6.403 20 O -0.251 6.251 21 H 0.074 0.926 22 H 0.021 0.979 23 H 0.014 0.986 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.954 -19.635 -4.883 20.327 hybrid contribution -0.065 1.131 0.208 1.152 sum 1.889 -18.504 -4.675 19.179 Atomic orbital electron populations 1.70072 1.07668 1.27882 1.51527 1.25939 0.95798 1.03248 0.94602 0.85452 0.78596 0.78448 0.78605 1.19525 1.20638 1.19071 1.21671 0.93555 0.92422 1.50832 0.92421 1.18932 0.94247 0.92391 0.95468 1.21414 0.98686 0.92483 1.01200 1.22511 0.91440 0.85508 1.00636 1.87886 1.34640 1.14228 1.95692 1.23119 0.94091 0.82343 1.03994 1.24921 0.96354 0.96362 0.83327 0.82511 1.25392 1.05373 0.88075 0.85377 1.87386 1.64065 1.40042 1.33375 1.21425 0.75898 0.78220 0.83877 1.91120 1.53003 1.77313 1.18887 1.87576 1.69288 1.32281 1.35980 0.92648 0.97906 0.98626 0.93494 0.92344 0.91673 0.93520 0.86354 0.92202 0.83230 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.39 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.14 5.52 30.60 0.17 -3.97 16 11 C 0.07 2.39 5.94 71.98 0.43 2.82 16 12 O -0.40 -11.38 10.34 -148.98 -1.54 -12.92 16 13 C 0.04 0.66 5.48 71.98 0.39 1.06 16 14 C 0.04 0.58 4.15 30.96 0.13 0.71 16 15 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 16 C 0.03 0.17 7.88 72.35 0.57 0.74 16 17 O -0.33 -5.77 11.11 -38.95 -0.43 -6.21 16 18 C 0.60 15.41 9.39 113.37 1.06 16.47 16 19 O -0.51 -17.63 18.04 27.77 0.50 -17.13 16 20 O -0.33 -8.17 10.82 -38.74 -0.42 -8.59 16 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.15 -0.01 7.73 -2.39 -0.02 -0.03 16 31 H 0.17 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: -1.00 -76.88 277.56 5.13 -71.75 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: 1.11 Total: -6.38 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.60 Total: -11.03 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.62 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.89 Total: -44.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -76.88 5.13 -71.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.861 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds